FFCP PHASE1:Mm9::chr15:4325626..4325656,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=239318|HGNC=|MCL_coexpression_id=39|UniProt=B2RPW5|association_with_transcript=0bp_to_ENSMUST00000096507_5end|description=CAGE_peak_1_at_Plcxd3_5end|id=chr15:4325626..4325656,+|ontology_enrichment_celltype=CL:0000540!1.44e-11!33;CL:0000047!1.44e-11!33;CL:0000031!1.44e-11!33;CL:0000404!1.44e-11!33;CL:0000117!5.67e-10!23;CL:0000337!5.67e-10!23;CL:0000393!1.27e-07!39;CL:0000211!1.27e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,8.79e-12,33;CL:0000047,8.79e-12,33;CL:0000031,8.79e-12,33;CL:0000404,8.79e-12,33;CL:0000117,7.17e-11,23;CL:0000337,7.17e-11,23;CL:0000393,3.17e-08,39;CL:0000211,3.17e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!1.74e-21!71;UBERON:0003075!1.74e-21!71;UBERON:0007284!1.74e-21!71;UBERON:0001017!7.50e-21!73;UBERON:0005743!7.50e-21!73;UBERON:0000073!1.85e-20!75;UBERON:0001016!1.85e-20!75;UBERON:0004121!6.44e-20!102;UBERON:0000924!6.44e-20!102;UBERON:0006601!6.44e-20!102;UBERON:0001049!1.28e-17!52;UBERON:0005068!1.28e-17!52;UBERON:0006241!1.28e-17!52;UBERON:0007135!1.28e-17!52;UBERON:0000033!2.47e-17!63;UBERON:0000955!4.52e-17!50;UBERON:0006238!4.52e-17!50;UBERON:0002616!2.09e-16!49;UBERON:0003056!2.51e-14!49;UBERON:0002020!7.54e-14!34;UBERON:0003080!1.21e-13!40;UBERON:0002780!5.64e-13!39;UBERON:0001890!5.64e-13!39;UBERON:0006240!5.64e-13!39;UBERON:0002791!1.82e-11!29;UBERON:0003528!1.82e-11!29;UBERON:0001893!1.82e-11!29;UBERON:0000468!7.88e-09!333;UBERON:0002021!1.26e-07!10;UBERON:0000411!1.26e-07!10;UBERON:0001950!1.26e-07!10;UBERON:0000956!1.91e-07!21;UBERON:0001869!1.91e-07!21;UBERON:0000203!1.91e-07!21;UBERON:0002619!3.29e-07!17;UBERON:0007811!5.93e-07!86;UBERON:0000153!7.96e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.75e-22,73;UBERON:0001016,3.48e-21,75;UBERON:0002346,6.35e-21,64;UBERON:0003075,6.35e-21,64;UBERON:0007284,6.35e-21,64;UBERON:0000073,1.93e-20,54;UBERON:0001049,6.36e-19,52;UBERON:0005068,6.36e-19,52;UBERON:0006241,6.36e-19,52;UBERON:0007135,6.36e-19,52;UBERON:0004121,2.57e-18,95;UBERON:0000924,2.57e-18,95;UBERON:0006601,2.57e-18,95;UBERON:0010371,1.25e-17,73;UBERON:0000955,4.36e-16,47;UBERON:0006238,4.36e-16,47;UBERON:0002020,1.65e-15,34;UBERON:0002616,2.40e-15,46;UBERON:0003056,1.93e-14,49;UBERON:0010314,5.39e-14,92;UBERON:0003080,9.86e-14,40;UBERON:0002780,5.58e-13,39;UBERON:0001890,5.58e-13,39;UBERON:0006240,5.58e-13,39;UBERON:0003528,1.06e-12,29;UBERON:0002791,1.06e-12,29;UBERON:0001893,1.06e-12,29;UBERON:0002021,9.28e-09,10;UBERON:0000411,9.28e-09,10;UBERON:0001950,9.28e-09,10;UBERON:0002619,2.60e-08,17;UBERON:0000956,5.34e-08,21;UBERON:0001869,5.34e-08,21;UBERON:0000203,5.34e-08,21|phase1_expression=4.32401887182944,0,0,0,0,1.51091344720701,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10259740906419,0,0,0.639969691173627,0.68822784320151,0,0,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.573066879877513,0,4.65327859977075,5.28990979272033,5.70448263155561,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,1.26194976810829,4.28476476605705,4.19650227808066,3.91970557487853,2.39613677545591,1.83843757322004,22.0231761998777,11.6195477657521,18.5863905240055,3.42904348098504,3.47653045689157,5.73004707612436,17.8677119360884,19.1339287410771,21.0861581931998,11.490514833473,8.54230084794618,5.40558392893372,0.37863096666592,0.831287161174641,0.579728977403356,0,0,0,0,0,1.40444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.34255163915718,0.776813650941515,2.67195850316685,1.56136794089522,4.26251669636998,2.7673859670727,5.87818298155228,6.23220147819235,0.502666365318702,0,6.79616977523585,0,0.161766849947409,0,0,0,53.2861050561016,37.0720671059815,1.02182822083437,0,0,0,22.6183865501282,11.8950156732843,5.90575454930463,16.8609590586508,11.2514801225345,14.7529511637288,12.6548185192851,2.74966282395854,0.622034853050465,1.76905930903572,1.26265113531884,1.30120442962704,0.229902104433473,2.88099407688559,3.0140963567143,1.83698547708585,1.5373646434182,1.03071897015702,3.88055056108524,1.72454394346274,0.756424320671277,0.175951124163949,0.657587197282725,1.11218899690239,0.696504333044333,0.61734640922383,0.59710280045548,0,0,0,1.03562886267751,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0.146199987425332,0,0,13.8791366052324,3.2929475961371,0.330418782983798,0.793351699990633,1.06644125267617,0.928946687441754,0.77320476793256,1.00841762311671,0.22237804384487,0.570676878337677,0.474529061544512,0.823494773620054,1.50801125280162,1.59165177632921,0,0,1.29682829924817,0.597423819763102,0.569003702859245,1.25673363870702,3.38123207019241,0.814605311381257,0.969762435838129,0.701358198903186,1.26473074248515,0.295220295959204,1.255989822731,0.987177311374404,0.296452627087149,0.83422552858047,0.786235980452812,0.449724224769707,0,0,0.25462585178142,0,0.162135226775035,0,0,0.372140947668503,0.312037673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| ||
|EntrezGene=239318 | |||
|HGNC= | |||
|MCL_coexpression_id=39 | |||
|UniProt=B2RPW5 | |||
|association_with_transcript=0bp_to_ENSMUST00000096507_5end | |||
|description=CAGE_peak_1_at_Plcxd3_5end | |||
|id=chr15:4325626..4325656,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.44e-11!33;CL:0000047!1.44e-11!33;CL:0000031!1.44e-11!33;CL:0000404!1.44e-11!33;CL:0000117!5.67e-10!23;CL:0000337!5.67e-10!23;CL:0000393!1.27e-07!39;CL:0000211!1.27e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.79e-12,33;CL:0000047,8.79e-12,33;CL:0000031,8.79e-12,33;CL:0000404,8.79e-12,33;CL:0000117,7.17e-11,23;CL:0000337,7.17e-11,23;CL:0000393,3.17e-08,39;CL:0000211,3.17e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!1.74e-21!71;UBERON:0003075!1.74e-21!71;UBERON:0007284!1.74e-21!71;UBERON:0001017!7.50e-21!73;UBERON:0005743!7.50e-21!73;UBERON:0000073!1.85e-20!75;UBERON:0001016!1.85e-20!75;UBERON:0004121!6.44e-20!102;UBERON:0000924!6.44e-20!102;UBERON:0006601!6.44e-20!102;UBERON:0001049!1.28e-17!52;UBERON:0005068!1.28e-17!52;UBERON:0006241!1.28e-17!52;UBERON:0007135!1.28e-17!52;UBERON:0000033!2.47e-17!63;UBERON:0000955!4.52e-17!50;UBERON:0006238!4.52e-17!50;UBERON:0002616!2.09e-16!49;UBERON:0003056!2.51e-14!49;UBERON:0002020!7.54e-14!34;UBERON:0003080!1.21e-13!40;UBERON:0002780!5.64e-13!39;UBERON:0001890!5.64e-13!39;UBERON:0006240!5.64e-13!39;UBERON:0002791!1.82e-11!29;UBERON:0003528!1.82e-11!29;UBERON:0001893!1.82e-11!29;UBERON:0000468!7.88e-09!333;UBERON:0002021!1.26e-07!10;UBERON:0000411!1.26e-07!10;UBERON:0001950!1.26e-07!10;UBERON:0000956!1.91e-07!21;UBERON:0001869!1.91e-07!21;UBERON:0000203!1.91e-07!21;UBERON:0002619!3.29e-07!17;UBERON:0007811!5.93e-07!86;UBERON:0000153!7.96e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.75e-22,73;UBERON:0001016,3.48e-21,75;UBERON:0002346,6.35e-21,64;UBERON:0003075,6.35e-21,64;UBERON:0007284,6.35e-21,64;UBERON:0000073,1.93e-20,54;UBERON:0001049,6.36e-19,52;UBERON:0005068,6.36e-19,52;UBERON:0006241,6.36e-19,52;UBERON:0007135,6.36e-19,52;UBERON:0004121,2.57e-18,95;UBERON:0000924,2.57e-18,95;UBERON:0006601,2.57e-18,95;UBERON:0010371,1.25e-17,73;UBERON:0000955,4.36e-16,47;UBERON:0006238,4.36e-16,47;UBERON:0002020,1.65e-15,34;UBERON:0002616,2.40e-15,46;UBERON:0003056,1.93e-14,49;UBERON:0010314,5.39e-14,92;UBERON:0003080,9.86e-14,40;UBERON:0002780,5.58e-13,39;UBERON:0001890,5.58e-13,39;UBERON:0006240,5.58e-13,39;UBERON:0003528,1.06e-12,29;UBERON:0002791,1.06e-12,29;UBERON:0001893,1.06e-12,29;UBERON:0002021,9.28e-09,10;UBERON:0000411,9.28e-09,10;UBERON:0001950,9.28e-09,10;UBERON:0002619,2.60e-08,17;UBERON:0000956,5.34e-08,21;UBERON:0001869,5.34e-08,21;UBERON:0000203,5.34e-08,21 | |||
|phase1_expression=4.32401887182944,0,0,0,0,1.51091344720701,2.10251376535973,0,0,0,0,0,0,0,0,0,0,0,0,0,5.10259740906419,0,0,0.639969691173627,0.68822784320151,0,0,0,0.190023419456374,0.504060259519861,0.221730510655305,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0.219686182734472,0,0.139986421625363,0,0,0,0,0,0.573066879877513,0,4.65327859977075,5.28990979272033,5.70448263155561,0,0,0,0,0,0,0,1.03689612308478,0.945041568321835,1.26194976810829,4.28476476605705,4.19650227808066,3.91970557487853,2.39613677545591,1.83843757322004,22.0231761998777,11.6195477657521,18.5863905240055,3.42904348098504,3.47653045689157,5.73004707612436,17.8677119360884,19.1339287410771,21.0861581931998,11.490514833473,8.54230084794618,5.40558392893372,0.37863096666592,0.831287161174641,0.579728977403356,0,0,0,0,0,1.40444420131752,0,0,0,0.422530259330042,0,0,0,0,0,0,0.34255163915718,0.776813650941515,2.67195850316685,1.56136794089522,4.26251669636998,2.7673859670727,5.87818298155228,6.23220147819235,0.502666365318702,0,6.79616977523585,0,0.161766849947409,0,0,0,53.2861050561016,37.0720671059815,1.02182822083437,0,0,0,22.6183865501282,11.8950156732843,5.90575454930463,16.8609590586508,11.2514801225345,14.7529511637288,12.6548185192851,2.74966282395854,0.622034853050465,1.76905930903572,1.26265113531884,1.30120442962704,0.229902104433473,2.88099407688559,3.0140963567143,1.83698547708585,1.5373646434182,1.03071897015702,3.88055056108524,1.72454394346274,0.756424320671277,0.175951124163949,0.657587197282725,1.11218899690239,0.696504333044333,0.61734640922383,0.59710280045548,0,0,0,1.03562886267751,0.234526059981096,0,0,0.196764231747404,0,0,0,0.116765342367169,0.16455984991348,0,0.0810688095458557,0.146199987425332,0,0,13.8791366052324,3.2929475961371,0.330418782983798,0.793351699990633,1.06644125267617,0.928946687441754,0.77320476793256,1.00841762311671,0.22237804384487,0.570676878337677,0.474529061544512,0.823494773620054,1.50801125280162,1.59165177632921,0,0,1.29682829924817,0.597423819763102,0.569003702859245,1.25673363870702,3.38123207019241,0.814605311381257,0.969762435838129,0.701358198903186,1.26473074248515,0.295220295959204,1.255989822731,0.987177311374404,0.296452627087149,0.83422552858047,0.786235980452812,0.449724224769707,0,0,0.25462585178142,0,0.162135226775035,0,0,0.372140947668503,0.312037673114561,0,0.179397413521912,0,6.28160846566456,0,0,0.169745085775188,0,0,0.238043640886014,0.195133647857799,4.72905432318573,2.6575762757853,8.92946704481928,2.62181303545181,3.28101465545202,1.59113964439663,0,0,0,0,26.0091955780223,15.4719426301708,0,0.252470927204373,1.89304931649754,2.73307121007647,8.18608911384636,0.716906393857656,2.22798674082394,3.39691836946599,0.809621403349789,2.04579100537918,1.97643888973262,19.2792789853084,0.425820255624806,0,1.14020871547503,1.81467135269789,1.32745138339963,4.12727081463468,2.72091201268276,3.20628635585027,0.590603785761546,4.30409207121498,2.58428293168221,4.36240475373007,3.56497378384721,1.26414703174326,1.05418608574999,1.03135543248187,6.12791290356818,0.900305470156551,0.129358683782755,0.857348140126369,3.54680467284547,4.63758925765383,3.62007845324666,0.304464949114599,0,0.21183207086382,2.8668691747145,4.78170133530292,0.322928853391811,0.241251699712623,0.238744688006273,0,0.582961673259701,15.2048747648618,0.170870880797853,0.206386867963223,0.185194527369712,0,0,0,0,0,0,0,0.316335993581135,1.21991680276109,0.756037385752609,0.627264888043406,0.436725127492355,0.674321731924103,0.743881101528023,1.04702376793612,0.129614973291793,0,0,2.0932316446157,1.98550188548517,4.083474955225,3.09983576346555,4.39285926276023,3.52071715937262,0.781226309063701,0.419437377702843,0,0.288030006257865,0,0.202725215290164,0.718976700153791,0,0.179026695667481,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0,0.0962118416403295,0.233753804363138,1.81384306892169,0,0,0,5.40930863290133,1.50145980360946,4.39563898241436,0,0.501572104035363,19.2015626489803,22.0956113523445,20.6242384838183,15.1230800462445,14.3867329151835,21.9064230243013,10.1253375034771,11.7083512838297,14.5005570874945,11.9084871702919,2.38710899443606,4.38927360741134,1.19513524027894,1.70174701947806,2.09613162627982,2.5738091183002,1.55572709461131,2.67845574410562,1.92551525755089,3.03236654116557,2.78827229879264,1.50901073108861,2.80924522409647,1.72867911493147,2.12511235135769,1.42888107384922,1.50649623728312,2.12200142510076,3.29668720642645,1.32479028120958,3.42869252385415,1.59728225543404,1.66905332963125,2.90692833264657,3.10560955370591,1.18460451048347,1.46342378298218,2.10455769150274,2.03706170768793,2.24456908663095,1.42362021749009,1.67457620038458,0.818462086339379,1.39443157067369,2.12197272079256,1.49886346762768,2.33931608445408,1.28922632428979,1.53030665655075,0.882365676478062,1.62307484934295 | |||
|short_description=p1@Plcxd3 | |||
}} |
Revision as of 10:30, 13 September 2013
Short description: | p1@Plcxd3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Plcxd3_5end |
Coexpression cluster: | MCL_coexpression_mm9:39 |
Association with transcript: | 0bp_to_ENSMUST00000096507_5end |
EntrezGene: | Plcxd3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.79e-12 | 33 |
neuronal stem cell | 8.79e-12 | 33 |
neuroblast | 8.79e-12 | 33 |
electrically signaling cell | 8.79e-12 | 33 |
CNS neuron (sensu Vertebrata) | 7.17e-11 | 23 |
neuroblast (sensu Vertebrata) | 7.17e-11 | 23 |
electrically responsive cell | 3.17e-08 | 39 |
electrically active cell | 3.17e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.75e-22 | 73 |
nervous system | 3.48e-21 | 75 |
neurectoderm | 6.35e-21 | 64 |
neural plate | 6.35e-21 | 64 |
presumptive neural plate | 6.35e-21 | 64 |
regional part of nervous system | 1.93e-20 | 54 |
neural tube | 6.36e-19 | 52 |
neural rod | 6.36e-19 | 52 |
future spinal cord | 6.36e-19 | 52 |
neural keel | 6.36e-19 | 52 |
ectoderm-derived structure | 2.57e-18 | 95 |
ectoderm | 2.57e-18 | 95 |
presumptive ectoderm | 2.57e-18 | 95 |
ecto-epithelium | 1.25e-17 | 73 |
brain | 4.36e-16 | 47 |
future brain | 4.36e-16 | 47 |
gray matter | 1.65e-15 | 34 |
regional part of brain | 2.40e-15 | 46 |
pre-chordal neural plate | 1.93e-14 | 49 |
structure with developmental contribution from neural crest | 5.39e-14 | 92 |
anterior neural tube | 9.86e-14 | 40 |
regional part of forebrain | 5.58e-13 | 39 |
forebrain | 5.58e-13 | 39 |
future forebrain | 5.58e-13 | 39 |
brain grey matter | 1.06e-12 | 29 |
regional part of telencephalon | 1.06e-12 | 29 |
telencephalon | 1.06e-12 | 29 |
occipital lobe | 9.28e-09 | 10 |
visual cortex | 9.28e-09 | 10 |
neocortex | 9.28e-09 | 10 |
regional part of cerebral cortex | 2.60e-08 | 17 |
cerebral cortex | 5.34e-08 | 21 |
cerebral hemisphere | 5.34e-08 | 21 |
pallium | 5.34e-08 | 21 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.