FFCP PHASE1:Mm9::chr15:84388206..84388305,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=223732|HGNC=|MCL_coexpression_id=60|UniProt=Q505G4|association_with_transcript=0bp_to_NM_177630,uc007xcc.1_5end|description=CAGE_peak_1_at_Ldoc1l_5end|id=chr15:84388206..84388305,-|ontology_enrichment_celltype=CL:0000117!3.81e-14!23;CL:0000337!3.81e-14!23;CL:0000540!4.53e-10!33;CL:0000047!4.53e-10!33;CL:0000031!4.53e-10!33;CL:0000404!4.53e-10!33;CL:0002319!7.38e-10!43;CL:0000221!7.61e-10!44;CL:0000133!7.61e-10!44;CL:0000393!9.39e-07!39;CL:0000211!9.39e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.33e-14,23;CL:0000337,3.33e-14,23;CL:0000540,4.14e-10,33;CL:0000047,4.14e-10,33;CL:0000031,4.14e-10,33;CL:0000404,4.14e-10,33;CL:0002319,6.75e-10,43;CL:0000221,6.96e-10,44;CL:0000133,6.96e-10,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!2.90e-27!63;UBERON:0001017!3.92e-27!73;UBERON:0005743!3.92e-27!73;UBERON:0001049!1.11e-26!52;UBERON:0005068!1.11e-26!52;UBERON:0006241!1.11e-26!52;UBERON:0007135!1.11e-26!52;UBERON:0002346!6.25e-26!71;UBERON:0003075!6.25e-26!71;UBERON:0007284!6.25e-26!71;UBERON:0000073!8.54e-26!75;UBERON:0001016!8.54e-26!75;UBERON:0000955!1.41e-25!50;UBERON:0006238!1.41e-25!50;UBERON:0002616!7.23e-25!49;UBERON:0003056!1.32e-24!49;UBERON:0000153!3.21e-23!94;UBERON:0004121!5.12e-23!102;UBERON:0000924!5.12e-23!102;UBERON:0006601!5.12e-23!102;UBERON:0003080!6.21e-22!40;UBERON:0002780!2.06e-21!39;UBERON:0001890!2.06e-21!39;UBERON:0006240!2.06e-21!39;UBERON:0007811!6.92e-21!86;UBERON:0002020!1.50e-19!34;UBERON:0002791!9.34e-17!29;UBERON:0003528!9.34e-17!29;UBERON:0001893!9.34e-17!29;UBERON:0000956!2.33e-12!21;UBERON:0001869!2.33e-12!21;UBERON:0000203!2.33e-12!21;UBERON:0002619!7.18e-10!17;UBERON:0000468!2.35e-08!333;UBERON:0000922!9.74e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.49e-28,64;UBERON:0003075,4.49e-28,64;UBERON:0007284,4.49e-28,64;UBERON:0000073,4.77e-28,54;UBERON:0001017,2.98e-27,73;UBERON:0001049,8.51e-27,52;UBERON:0005068,8.51e-27,52;UBERON:0006241,8.51e-27,52;UBERON:0007135,8.51e-27,52;UBERON:0001016,6.60e-26,75;UBERON:0003056,1.03e-24,49;UBERON:0004121,3.42e-24,95;UBERON:0000924,3.42e-24,95;UBERON:0006601,3.42e-24,95;UBERON:0010371,3.74e-24,73;UBERON:0000955,4.40e-24,47;UBERON:0006238,4.40e-24,47;UBERON:0002616,2.23e-23,46;UBERON:0003080,5.00e-22,40;UBERON:0002780,1.67e-21,39;UBERON:0001890,1.67e-21,39;UBERON:0006240,1.67e-21,39;UBERON:0010314,2.03e-21,92;UBERON:0002020,1.24e-19,34;UBERON:0003528,7.95e-17,29;UBERON:0002791,7.95e-17,29;UBERON:0001893,7.95e-17,29;UBERON:0000956,2.08e-12,21;UBERON:0001869,2.08e-12,21;UBERON:0000203,2.08e-12,21;UBERON:0002619,6.57e-10,17;UBERON:0000922,5.69e-07,320|phase1_expression=14.0930985452219,0,0.454999239389536,0,0,0.503637815735669,1.16806320297763,2.32421982194837,0,0,0.171217968225505,0.558405112967355,1.02720437958723,1.83582845079895,2.6648780945253,2.42970320867791,0,7.5710919685977,8.36398044995006,2.12194825899015,17.2637879006672,0,0,0.159992422793407,1.14704640533585,0.57423196411502,0,0.430942465371778,0.380046838912748,0.504060259519861,0.443461021310609,0,0,0,0.288851619751275,0.332469290716985,0,1.25559489221072,0.7813353445238,0,0.588231488031014,0,0.485510353031154,0.377690453926732,0.811015449756117,0.734187008646726,10.9534788208725,10.9012578190223,12.7417985985994,11.2769341463084,7.13930750289349,10.062679505548,3.35565212115473,2.90144856804538,0.336093799142464,2.57259436035947,2.29226751951005,5.15672092277442,51.9953304409166,62.9499265333719,50.7065122804943,8.80995783379743,10.6715375533337,4.04954872776629,1.97773272513395,4.2628806896766,10.7856039786626,6.53171119046643,45.1049813541878,51.5722684427058,48.7953910335206,26.5655415495537,28.2711732418065,48.8738288867667,51.08563605272,41.3648453974509,27.5289702498472,27.8358397025709,23.0409799884365,60.6676923558892,60.8392829956024,44.7985498678814,19.821992929098,13.5063026407603,24.90611438762,42.7211448936818,27.620106075026,40.4486797440902,1.13589289999776,4.83657984683427,2.89864488701678,0,0,0,0,0.448026887097336,3.23022166303029,0,0,0,8.30976176682415,0,0,0,0.649473123033642,0,1.01104889002957,2.62622923353838,7.25026074212081,6.97678053604676,6.93941307064543,7.61163695780353,6.45723392316964,4.97384713823654,5.76184664964954,6.28332956648377,2.22475470960936,2.16899035379867,3.5384422077995,6.14714029800155,4.85851340612866,4.363877278217,1.86391761218122,14.3462590535658,10.4723353406728,0.510914110417183,2.03685711660064,0.599902730993408,0.889491589511453,27.2618963716777,38.8875512395833,57.2983845634662,38.0675261221085,35.2887331115856,27.8435979709811,23.3627418817571,10.2857757488819,4.10543003013307,2.27450482590307,9.04899980311838,16.1349349273753,9.88579049063934,18.0062129805349,12.2070902446929,21.4995337318196,22.2917873295639,21.6450983732974,19.9201595469042,20.6945273215529,17.5868654556072,22.8736461413134,16.6588756644957,13.0682207136031,11.1440693287093,8.0255033199098,12.3401245427466,0.702213187313235,1.02939162845886,1.42081749697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| ||
|EntrezGene=223732 | |||
|HGNC= | |||
|MCL_coexpression_id=60 | |||
|UniProt=Q505G4 | |||
|association_with_transcript=0bp_to_NM_177630,uc007xcc.1_5end | |||
|description=CAGE_peak_1_at_Ldoc1l_5end | |||
|id=chr15:84388206..84388305,- | |||
|ontology_enrichment_celltype=CL:0000117!3.81e-14!23;CL:0000337!3.81e-14!23;CL:0000540!4.53e-10!33;CL:0000047!4.53e-10!33;CL:0000031!4.53e-10!33;CL:0000404!4.53e-10!33;CL:0002319!7.38e-10!43;CL:0000221!7.61e-10!44;CL:0000133!7.61e-10!44;CL:0000393!9.39e-07!39;CL:0000211!9.39e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.33e-14,23;CL:0000337,3.33e-14,23;CL:0000540,4.14e-10,33;CL:0000047,4.14e-10,33;CL:0000031,4.14e-10,33;CL:0000404,4.14e-10,33;CL:0002319,6.75e-10,43;CL:0000221,6.96e-10,44;CL:0000133,6.96e-10,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.90e-27!63;UBERON:0001017!3.92e-27!73;UBERON:0005743!3.92e-27!73;UBERON:0001049!1.11e-26!52;UBERON:0005068!1.11e-26!52;UBERON:0006241!1.11e-26!52;UBERON:0007135!1.11e-26!52;UBERON:0002346!6.25e-26!71;UBERON:0003075!6.25e-26!71;UBERON:0007284!6.25e-26!71;UBERON:0000073!8.54e-26!75;UBERON:0001016!8.54e-26!75;UBERON:0000955!1.41e-25!50;UBERON:0006238!1.41e-25!50;UBERON:0002616!7.23e-25!49;UBERON:0003056!1.32e-24!49;UBERON:0000153!3.21e-23!94;UBERON:0004121!5.12e-23!102;UBERON:0000924!5.12e-23!102;UBERON:0006601!5.12e-23!102;UBERON:0003080!6.21e-22!40;UBERON:0002780!2.06e-21!39;UBERON:0001890!2.06e-21!39;UBERON:0006240!2.06e-21!39;UBERON:0007811!6.92e-21!86;UBERON:0002020!1.50e-19!34;UBERON:0002791!9.34e-17!29;UBERON:0003528!9.34e-17!29;UBERON:0001893!9.34e-17!29;UBERON:0000956!2.33e-12!21;UBERON:0001869!2.33e-12!21;UBERON:0000203!2.33e-12!21;UBERON:0002619!7.18e-10!17;UBERON:0000468!2.35e-08!333;UBERON:0000922!9.74e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,4.49e-28,64;UBERON:0003075,4.49e-28,64;UBERON:0007284,4.49e-28,64;UBERON:0000073,4.77e-28,54;UBERON:0001017,2.98e-27,73;UBERON:0001049,8.51e-27,52;UBERON:0005068,8.51e-27,52;UBERON:0006241,8.51e-27,52;UBERON:0007135,8.51e-27,52;UBERON:0001016,6.60e-26,75;UBERON:0003056,1.03e-24,49;UBERON:0004121,3.42e-24,95;UBERON:0000924,3.42e-24,95;UBERON:0006601,3.42e-24,95;UBERON:0010371,3.74e-24,73;UBERON:0000955,4.40e-24,47;UBERON:0006238,4.40e-24,47;UBERON:0002616,2.23e-23,46;UBERON:0003080,5.00e-22,40;UBERON:0002780,1.67e-21,39;UBERON:0001890,1.67e-21,39;UBERON:0006240,1.67e-21,39;UBERON:0010314,2.03e-21,92;UBERON:0002020,1.24e-19,34;UBERON:0003528,7.95e-17,29;UBERON:0002791,7.95e-17,29;UBERON:0001893,7.95e-17,29;UBERON:0000956,2.08e-12,21;UBERON:0001869,2.08e-12,21;UBERON:0000203,2.08e-12,21;UBERON:0002619,6.57e-10,17;UBERON:0000922,5.69e-07,320 | |||
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| |||
|short_description=p1@Ldoc1l | |||
}} |
Revision as of 11:26, 13 September 2013
Short description: | p1@Ldoc1l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ldoc1l_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_NM_177630, uc007xcc.1_5end |
EntrezGene: | Ldoc1l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.33e-14 | 23 |
neuroblast (sensu Vertebrata) | 3.33e-14 | 23 |
neuron | 4.14e-10 | 33 |
neuronal stem cell | 4.14e-10 | 33 |
neuroblast | 4.14e-10 | 33 |
electrically signaling cell | 4.14e-10 | 33 |
neural cell | 6.75e-10 | 43 |
ectodermal cell | 6.96e-10 | 44 |
neurectodermal cell | 6.96e-10 | 44 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 4.49e-28 | 64 |
neural plate | 4.49e-28 | 64 |
presumptive neural plate | 4.49e-28 | 64 |
regional part of nervous system | 4.77e-28 | 54 |
central nervous system | 2.98e-27 | 73 |
neural tube | 8.51e-27 | 52 |
neural rod | 8.51e-27 | 52 |
future spinal cord | 8.51e-27 | 52 |
neural keel | 8.51e-27 | 52 |
nervous system | 6.60e-26 | 75 |
pre-chordal neural plate | 1.03e-24 | 49 |
ectoderm-derived structure | 3.42e-24 | 95 |
ectoderm | 3.42e-24 | 95 |
presumptive ectoderm | 3.42e-24 | 95 |
ecto-epithelium | 3.74e-24 | 73 |
brain | 4.40e-24 | 47 |
future brain | 4.40e-24 | 47 |
regional part of brain | 2.23e-23 | 46 |
anterior neural tube | 5.00e-22 | 40 |
regional part of forebrain | 1.67e-21 | 39 |
forebrain | 1.67e-21 | 39 |
future forebrain | 1.67e-21 | 39 |
structure with developmental contribution from neural crest | 2.03e-21 | 92 |
gray matter | 1.24e-19 | 34 |
brain grey matter | 7.95e-17 | 29 |
regional part of telencephalon | 7.95e-17 | 29 |
telencephalon | 7.95e-17 | 29 |
cerebral cortex | 2.08e-12 | 21 |
cerebral hemisphere | 2.08e-12 | 21 |
pallium | 2.08e-12 | 21 |
regional part of cerebral cortex | 6.57e-10 | 17 |
embryo | 5.69e-07 | 320 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.