FFCP PHASE1:Mm9::chr16:34573612..34573640,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=545156|HGNC=|MCL_coexpression_id=13|UniProt=A2CG49|association_with_transcript=0bp_to_ENSMUST00000114961_5end|description=CAGE_peak_2_at_Kalrn_5end|id=chr16:34573612..34573640,-|ontology_enrichment_celltype=CL:0000393!2.96e-16!39;CL:0000211!2.96e-16!39;CL:0000540!1.39e-15!33;CL:0000047!1.39e-15!33;CL:0000031!1.39e-15!33;CL:0000404!1.39e-15!33;CL:0000117!1.49e-11!23;CL:0000337!1.49e-11!23;CL:0000055!7.48e-09!50;CL:0002319!3.86e-08!43;CL:0000221!4.62e-08!44;CL:0000133!4.62e-08!44|ontology_enrichment_celltype_v019_2=CL:0000393,1.42e-16,39;CL:0000211,1.42e-16,39;CL:0000540,6.87e-16,33;CL:0000047,6.87e-16,33;CL:0000031,6.87e-16,33;CL:0000404,6.87e-16,33;CL:0000117,9.05e-12,23;CL:0000337,9.05e-12,23;CL:0002319,8.34e-08,43;CL:0000221,9.84e-08,44;CL:0000133,9.84e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.51e-17!73;UBERON:0005743!1.51e-17!73;UBERON:0000073!2.96e-16!75;UBERON:0001016!2.96e-16!75;UBERON:0002020!9.71e-16!34;UBERON:0003056!4.00e-15!49;UBERON:0004121!1.40e-14!102;UBERON:0000924!1.40e-14!102;UBERON:0006601!1.40e-14!102;UBERON:0002346!3.50e-14!71;UBERON:0003075!3.50e-14!71;UBERON:0007284!3.50e-14!71;UBERON:0002780!8.14e-14!39;UBERON:0001890!8.14e-14!39;UBERON:0006240!8.14e-14!39;UBERON:0000033!9.61e-14!63;UBERON:0003080!1.10e-13!40;UBERON:0002791!1.28e-13!29;UBERON:0003528!1.28e-13!29;UBERON:0001893!1.28e-13!29;UBERON:0000955!7.43e-13!50;UBERON:0006238!7.43e-13!50;UBERON:0001049!8.10e-13!52;UBERON:0005068!8.10e-13!52;UBERON:0006241!8.10e-13!52;UBERON:0007135!8.10e-13!52;UBERON:0002616!2.29e-12!49;UBERON:0000956!3.43e-11!21;UBERON:0001869!3.43e-11!21;UBERON:0000203!3.43e-11!21;UBERON:0000468!3.93e-10!333;UBERON:0002619!9.30e-09!17;UBERON:0000922!3.44e-08!328;UBERON:0002021!3.82e-08!10;UBERON:0000411!3.82e-08!10;UBERON:0001950!3.82e-08!10;UBERON:0000153!2.41e-07!94;UBERON:0000479!2.87e-07!349;UBERON:0007811!5.88e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-17,73;UBERON:0001016,6.30e-16,75;UBERON:0002020,1.43e-15,34;UBERON:0002346,3.26e-15,64;UBERON:0003075,3.26e-15,64;UBERON:0007284,3.26e-15,64;UBERON:0004121,6.76e-15,95;UBERON:0000924,6.76e-15,95;UBERON:0006601,6.76e-15,95;UBERON:0003056,1.50e-14,49;UBERON:0000073,3.17e-14,54;UBERON:0010371,6.26e-14,73;UBERON:0002780,1.45e-13,39;UBERON:0001890,1.45e-13,39;UBERON:0006240,1.45e-13,39;UBERON:0003080,1.94e-13,40;UBERON:0003528,2.08e-13,29;UBERON:0002791,2.08e-13,29;UBERON:0001893,2.08e-13,29;UBERON:0001049,1.42e-12,52;UBERON:0005068,1.42e-12,52;UBERON:0006241,1.42e-12,52;UBERON:0007135,1.42e-12,52;UBERON:0010314,2.66e-12,92;UBERON:0000955,2.48e-11,47;UBERON:0006238,2.48e-11,47;UBERON:0000956,6.56e-11,21;UBERON:0001869,6.56e-11,21;UBERON:0000203,6.56e-11,21;UBERON:0002616,7.48e-11,46;UBERON:0002619,1.91e-08,17;UBERON:0002021,2.75e-08,10;UBERON:0000411,2.75e-08,10;UBERON:0001950,2.75e-08,10|phase1_expression=7.04654927261093,0.348975407639361,0,0,0,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,1.33243904726265,1.41732687172878,0,0,0.137114433605739,0,5.69790044012167,0.0992909512008853,0,0.319984845586813,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,6.38674666682942,2.38610777810186,1.56478268869608,0.218025156380447,0.878744730937887,0.58328969722285,0.139986421625363,0,0,0,0,6.43148590089868,9.16907007804022,34.5500301825886,34.3937983461316,29.6234948392338,25.9870875437533,2.03306719241479,0.889294796111139,0,0,0.7104801149461,0,0.768436610643109,39.9205007387639,39.1517221161903,31.3384192413559,9.14083150092171,7.95126747425809,24.2531782445609,30.3830143127809,32.1726575313507,11.0115880999389,13.1517958227743,12.7493422602682,30.7295050411352,30.7398482504096,29.6920621217353,3.90856198601933,5.6276261003168,6.57032465440283,17.9723437138937,13.0981946335175,27.0279196446686,0.530083353332288,0.151143120213571,19.4209207430124,1.72084775396277,0,0.539703191637817,0,0,1.12355536105401,2.72688516124892,2.59786004602869,2.12003744706204,3.23939865486365,16.6824420638613,20.3844191765317,14.2213340630666,2.81438353314578,2.78695852022608,2.52762222507392,1.37020655662872,0.258937883647172,1.63286352971307,4.16364784238726,3.04465478312141,2.7673859670727,1.95939432718409,3.76283862834255,0.376999773989026,0.247194967734374,3.61498392299779,0,1.61766849947409,2.87093973998512,2.42437626567611,0,2.34224637609238,2.51336048176146,1.02182822083437,0,0,0,3.74476598512057,7.77751024791665,19.9790419859454,25.3783507480724,20.2015211290961,12.8828587626927,11.356888414743,6.00852246716866,3.23458123586242,1.26361379216837,0.631325567659422,10.4096354370163,11.0353010128067,9.54329287968351,9.34369870581433,13.2671173345089,10.5053250633577,14.8048724804372,0.776110112217047,6.03590380211958,10.5899404893979,15.3077478022636,4.16471891612392,6.39508673218875,2.089512999133,1.85203922767149,10.5488161413801,0,0,0,3.93538967817454,5.15957331958412,3.6012412292203,5.68187365404505,2.36117078096885,2.46827380619805,1.39520366850245,2.41446061259657,1.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| ||
|EntrezGene=545156 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=A2CG49 | |||
|association_with_transcript=0bp_to_ENSMUST00000114961_5end | |||
|description=CAGE_peak_2_at_Kalrn_5end | |||
|id=chr16:34573612..34573640,- | |||
|ontology_enrichment_celltype=CL:0000393!2.96e-16!39;CL:0000211!2.96e-16!39;CL:0000540!1.39e-15!33;CL:0000047!1.39e-15!33;CL:0000031!1.39e-15!33;CL:0000404!1.39e-15!33;CL:0000117!1.49e-11!23;CL:0000337!1.49e-11!23;CL:0000055!7.48e-09!50;CL:0002319!3.86e-08!43;CL:0000221!4.62e-08!44;CL:0000133!4.62e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.42e-16,39;CL:0000211,1.42e-16,39;CL:0000540,6.87e-16,33;CL:0000047,6.87e-16,33;CL:0000031,6.87e-16,33;CL:0000404,6.87e-16,33;CL:0000117,9.05e-12,23;CL:0000337,9.05e-12,23;CL:0002319,8.34e-08,43;CL:0000221,9.84e-08,44;CL:0000133,9.84e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.51e-17!73;UBERON:0005743!1.51e-17!73;UBERON:0000073!2.96e-16!75;UBERON:0001016!2.96e-16!75;UBERON:0002020!9.71e-16!34;UBERON:0003056!4.00e-15!49;UBERON:0004121!1.40e-14!102;UBERON:0000924!1.40e-14!102;UBERON:0006601!1.40e-14!102;UBERON:0002346!3.50e-14!71;UBERON:0003075!3.50e-14!71;UBERON:0007284!3.50e-14!71;UBERON:0002780!8.14e-14!39;UBERON:0001890!8.14e-14!39;UBERON:0006240!8.14e-14!39;UBERON:0000033!9.61e-14!63;UBERON:0003080!1.10e-13!40;UBERON:0002791!1.28e-13!29;UBERON:0003528!1.28e-13!29;UBERON:0001893!1.28e-13!29;UBERON:0000955!7.43e-13!50;UBERON:0006238!7.43e-13!50;UBERON:0001049!8.10e-13!52;UBERON:0005068!8.10e-13!52;UBERON:0006241!8.10e-13!52;UBERON:0007135!8.10e-13!52;UBERON:0002616!2.29e-12!49;UBERON:0000956!3.43e-11!21;UBERON:0001869!3.43e-11!21;UBERON:0000203!3.43e-11!21;UBERON:0000468!3.93e-10!333;UBERON:0002619!9.30e-09!17;UBERON:0000922!3.44e-08!328;UBERON:0002021!3.82e-08!10;UBERON:0000411!3.82e-08!10;UBERON:0001950!3.82e-08!10;UBERON:0000153!2.41e-07!94;UBERON:0000479!2.87e-07!349;UBERON:0007811!5.88e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.19e-17,73;UBERON:0001016,6.30e-16,75;UBERON:0002020,1.43e-15,34;UBERON:0002346,3.26e-15,64;UBERON:0003075,3.26e-15,64;UBERON:0007284,3.26e-15,64;UBERON:0004121,6.76e-15,95;UBERON:0000924,6.76e-15,95;UBERON:0006601,6.76e-15,95;UBERON:0003056,1.50e-14,49;UBERON:0000073,3.17e-14,54;UBERON:0010371,6.26e-14,73;UBERON:0002780,1.45e-13,39;UBERON:0001890,1.45e-13,39;UBERON:0006240,1.45e-13,39;UBERON:0003080,1.94e-13,40;UBERON:0003528,2.08e-13,29;UBERON:0002791,2.08e-13,29;UBERON:0001893,2.08e-13,29;UBERON:0001049,1.42e-12,52;UBERON:0005068,1.42e-12,52;UBERON:0006241,1.42e-12,52;UBERON:0007135,1.42e-12,52;UBERON:0010314,2.66e-12,92;UBERON:0000955,2.48e-11,47;UBERON:0006238,2.48e-11,47;UBERON:0000956,6.56e-11,21;UBERON:0001869,6.56e-11,21;UBERON:0000203,6.56e-11,21;UBERON:0002616,7.48e-11,46;UBERON:0002619,1.91e-08,17;UBERON:0002021,2.75e-08,10;UBERON:0000411,2.75e-08,10;UBERON:0001950,2.75e-08,10 | |||
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| |||
|short_description=p2@Kalrn | |||
}} |
Revision as of 12:31, 13 September 2013
Short description: | p2@Kalrn |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Kalrn_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000114961_5end |
EntrezGene: | Kalrn |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.42e-16 | 39 |
electrically active cell | 1.42e-16 | 39 |
neuron | 6.87e-16 | 33 |
neuronal stem cell | 6.87e-16 | 33 |
neuroblast | 6.87e-16 | 33 |
electrically signaling cell | 6.87e-16 | 33 |
CNS neuron (sensu Vertebrata) | 9.05e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.05e-12 | 23 |
neural cell | 8.34e-08 | 43 |
ectodermal cell | 9.84e-08 | 44 |
neurectodermal cell | 9.84e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.19e-17 | 73 |
nervous system | 6.30e-16 | 75 |
gray matter | 1.43e-15 | 34 |
neurectoderm | 3.26e-15 | 64 |
neural plate | 3.26e-15 | 64 |
presumptive neural plate | 3.26e-15 | 64 |
ectoderm-derived structure | 6.76e-15 | 95 |
ectoderm | 6.76e-15 | 95 |
presumptive ectoderm | 6.76e-15 | 95 |
pre-chordal neural plate | 1.50e-14 | 49 |
regional part of nervous system | 3.17e-14 | 54 |
ecto-epithelium | 6.26e-14 | 73 |
regional part of forebrain | 1.45e-13 | 39 |
forebrain | 1.45e-13 | 39 |
future forebrain | 1.45e-13 | 39 |
anterior neural tube | 1.94e-13 | 40 |
brain grey matter | 2.08e-13 | 29 |
regional part of telencephalon | 2.08e-13 | 29 |
telencephalon | 2.08e-13 | 29 |
neural tube | 1.42e-12 | 52 |
neural rod | 1.42e-12 | 52 |
future spinal cord | 1.42e-12 | 52 |
neural keel | 1.42e-12 | 52 |
structure with developmental contribution from neural crest | 2.66e-12 | 92 |
brain | 2.48e-11 | 47 |
future brain | 2.48e-11 | 47 |
cerebral cortex | 6.56e-11 | 21 |
cerebral hemisphere | 6.56e-11 | 21 |
pallium | 6.56e-11 | 21 |
regional part of brain | 7.48e-11 | 46 |
regional part of cerebral cortex | 1.91e-08 | 17 |
occipital lobe | 2.75e-08 | 10 |
visual cortex | 2.75e-08 | 10 |
neocortex | 2.75e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.