FFCP PHASE1:Hg19::chr5:139175190..139175224,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=84249|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=19092|TSSclassifier=S|UniProt=Q9BQI7|association_with_transcript=-181bp_to_ENST00000274710,NM_032289,uc003leu.1_5end|description=CAGE_peak_2_at_PSD2_5end|id=chr5:139175190..139175224,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0006222;3.99e-50;1|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!6.12e-57!57;UBERON:0005068!6.12e-57!57;UBERON:0006241!6.12e-57!57;UBERON:0007135!6.12e-57!57;UBERON:0005743!3.92e-52!86;UBERON:0001017!2.78e-51!82;UBERON:0000073!4.68e-50!94;UBERON:0001016!4.68e-50!94;UBERON:0003075!2.35e-42!86;UBERON:0007284!2.35e-42!86;UBERON:0002616!2.90e-42!59;UBERON:0000955!7.99e-42!69;UBERON:0006238!7.99e-42!69;UBERON:0002346!3.10e-40!90;UBERON:0007023!1.23e-35!115;UBERON:0002780!4.49e-33!41;UBERON:0001890!4.49e-33!41;UBERON:0006240!4.49e-33!41;UBERON:0003080!3.23e-32!42;UBERON:0003076!1.37e-27!15;UBERON:0003057!1.37e-27!15;UBERON:0002020!1.07e-26!34;UBERON:0003528!1.07e-26!34;UBERON:0001893!1.07e-26!34;UBERON:0004121!1.88e-25!169;UBERON:0000033!1.92e-25!123;UBERON:0000924!9.95e-25!173;UBERON:0006601!9.95e-25!173;UBERON:0001869!2.60e-24!32;UBERON:0000153!5.17e-24!129;UBERON:0007811!5.17e-24!129;UBERON:0003056!7.62e-24!61;UBERON:0002791!9.95e-24!33;UBERON:0002619!1.73e-21!22;UBERON:0001950!2.51e-19!20;UBERON:0000956!8.52e-19!25;UBERON:0000203!8.52e-19!25;UBERON:0001872!1.53e-17!5;UBERON:0000988!9.96e-17!3;UBERON:0002298!1.03e-16!8;UBERON:0002240!1.17e-16!3;UBERON:0004733!9.11e-16!12;UBERON:0002028!9.11e-16!12;UBERON:0007277!9.11e-16!12;UBERON:0004732!1.65e-14!13;UBERON:0000025!5.40e-13!194;UBERON:0001897!3.01e-12!2;UBERON:0002148!8.98e-12!2;UBERON:0009662!8.98e-12!2;UBERON:0005174!3.37e-10!5;UBERON:0001137!3.37e-10!5;UBERON:0002680!7.87e-10!9;UBERON:0001895!7.87e-10!9;UBERON:0010092!7.87e-10!9;UBERON:0002308!2.05e-09!9;UBERON:0000125!2.05e-09!9;UBERON:0004111!2.16e-09!241;UBERON:0000119!2.71e-08!312;UBERON:0001896!3.31e-08!3;UBERON:0005290!3.31e-08!3;UBERON:0010096!3.31e-08!3;UBERON:0006331!3.95e-08!3;UBERON:0000477!7.19e-08!286;UBERON:0001894!8.64e-08!7;UBERON:0006222!8.64e-08!7;UBERON:0000483!1.24e-07!309;UBERON:0002336!5.13e-07!1;UBERON:0001018!5.13e-07!1;UBERON:0002473!5.13e-07!1;UBERON:0005340!5.13e-07!1;UBERON:0002316!5.13e-07!1;UBERON:0003544!5.13e-07!1;UBERON:0001020!5.13e-07!1;UBERON:0005970!5.13e-07!1;UBERON:0002437!5.13e-07!1;UBERON:0002902!5.75e-07!1;UBERON:0009899!5.75e-07!1;UBERON:0000475!6.41e-07!365;UBERON:0002022!7.19e-07!1|ontology_enrichment_uberon_v019=UBERON:0001894;4.21e-29;7!UBERON:0002148;4.32e-26;2!UBERON:0006331;4.32e-26;2!UBERON:0009662;4.32e-26;2!UBERON:0001897;7.14e-26;2!UBERON:0010225;7.14e-26;2!UBERON:0000988;6.76e-18;3!UBERON:0002784;1.13e-13;4!UBERON:0002298;1.22e-09;6!UBERON:0000955;2.70e-08;68!UBERON:0002680;7.48e-07;9!UBERON:0000125;7.48e-07;9!UBERON:0002308;7.48e-07;9!UBERON:0001895;7.48e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0002148,4.32e-26,2;UBERON:0006331,4.32e-26,2;UBERON:0009662,4.32e-26,2;UBERON:0001897,7.14e-26,2;UBERON:0010225,7.14e-26,2;UBERON:0000988,6.76e-18,3;UBERON:0002784,1.13e-13,4;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0001017,2.17e-10,81;UBERON:0002298,1.22e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.82e-09,53;UBERON:0002616,3.82e-09,53;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0007023,8.86e-08,114;UBERON:0002680,7.48e-07,9;UBERON:0000125,7.48e-07,9;UBERON:0002308,7.48e-07,9;UBERON:0001895,7.48e-07,9;UBERON:0010092,7.48e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.458426764241994,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93866549219044,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=84249 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19092 | |||
|TSSclassifier=S | |||
|UniProt=Q9BQI7 | |||
|association_with_transcript=-181bp_to_ENST00000274710,NM_032289,uc003leu.1_5end | |||
|description=CAGE_peak_2_at_PSD2_5end | |||
|id=chr5:139175190..139175224,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006222;3.99e-50;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!6.12e-57!57;UBERON:0005068!6.12e-57!57;UBERON:0006241!6.12e-57!57;UBERON:0007135!6.12e-57!57;UBERON:0005743!3.92e-52!86;UBERON:0001017!2.78e-51!82;UBERON:0000073!4.68e-50!94;UBERON:0001016!4.68e-50!94;UBERON:0003075!2.35e-42!86;UBERON:0007284!2.35e-42!86;UBERON:0002616!2.90e-42!59;UBERON:0000955!7.99e-42!69;UBERON:0006238!7.99e-42!69;UBERON:0002346!3.10e-40!90;UBERON:0007023!1.23e-35!115;UBERON:0002780!4.49e-33!41;UBERON:0001890!4.49e-33!41;UBERON:0006240!4.49e-33!41;UBERON:0003080!3.23e-32!42;UBERON:0003076!1.37e-27!15;UBERON:0003057!1.37e-27!15;UBERON:0002020!1.07e-26!34;UBERON:0003528!1.07e-26!34;UBERON:0001893!1.07e-26!34;UBERON:0004121!1.88e-25!169;UBERON:0000033!1.92e-25!123;UBERON:0000924!9.95e-25!173;UBERON:0006601!9.95e-25!173;UBERON:0001869!2.60e-24!32;UBERON:0000153!5.17e-24!129;UBERON:0007811!5.17e-24!129;UBERON:0003056!7.62e-24!61;UBERON:0002791!9.95e-24!33;UBERON:0002619!1.73e-21!22;UBERON:0001950!2.51e-19!20;UBERON:0000956!8.52e-19!25;UBERON:0000203!8.52e-19!25;UBERON:0001872!1.53e-17!5;UBERON:0000988!9.96e-17!3;UBERON:0002298!1.03e-16!8;UBERON:0002240!1.17e-16!3;UBERON:0004733!9.11e-16!12;UBERON:0002028!9.11e-16!12;UBERON:0007277!9.11e-16!12;UBERON:0004732!1.65e-14!13;UBERON:0000025!5.40e-13!194;UBERON:0001897!3.01e-12!2;UBERON:0002148!8.98e-12!2;UBERON:0009662!8.98e-12!2;UBERON:0005174!3.37e-10!5;UBERON:0001137!3.37e-10!5;UBERON:0002680!7.87e-10!9;UBERON:0001895!7.87e-10!9;UBERON:0010092!7.87e-10!9;UBERON:0002308!2.05e-09!9;UBERON:0000125!2.05e-09!9;UBERON:0004111!2.16e-09!241;UBERON:0000119!2.71e-08!312;UBERON:0001896!3.31e-08!3;UBERON:0005290!3.31e-08!3;UBERON:0010096!3.31e-08!3;UBERON:0006331!3.95e-08!3;UBERON:0000477!7.19e-08!286;UBERON:0001894!8.64e-08!7;UBERON:0006222!8.64e-08!7;UBERON:0000483!1.24e-07!309;UBERON:0002336!5.13e-07!1;UBERON:0001018!5.13e-07!1;UBERON:0002473!5.13e-07!1;UBERON:0005340!5.13e-07!1;UBERON:0002316!5.13e-07!1;UBERON:0003544!5.13e-07!1;UBERON:0001020!5.13e-07!1;UBERON:0005970!5.13e-07!1;UBERON:0002437!5.13e-07!1;UBERON:0002902!5.75e-07!1;UBERON:0009899!5.75e-07!1;UBERON:0000475!6.41e-07!365;UBERON:0002022!7.19e-07!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0001894;4.21e-29;7!UBERON:0002148;4.32e-26;2!UBERON:0006331;4.32e-26;2!UBERON:0009662;4.32e-26;2!UBERON:0001897;7.14e-26;2!UBERON:0010225;7.14e-26;2!UBERON:0000988;6.76e-18;3!UBERON:0002784;1.13e-13;4!UBERON:0002298;1.22e-09;6!UBERON:0000955;2.70e-08;68!UBERON:0002680;7.48e-07;9!UBERON:0000125;7.48e-07;9!UBERON:0002308;7.48e-07;9!UBERON:0001895;7.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001894,4.86e-29,7;UBERON:0006222,4.86e-29,7;UBERON:0002148,4.32e-26,2;UBERON:0006331,4.32e-26,2;UBERON:0009662,4.32e-26,2;UBERON:0001897,7.14e-26,2;UBERON:0010225,7.14e-26,2;UBERON:0000988,6.76e-18,3;UBERON:0002784,1.13e-13,4;UBERON:0000955,3.68e-12,68;UBERON:0006238,3.68e-12,68;UBERON:0001017,2.17e-10,81;UBERON:0002298,1.22e-09,6;UBERON:0001016,1.88e-09,89;UBERON:0000073,3.82e-09,53;UBERON:0002616,3.82e-09,53;UBERON:0001049,1.04e-08,56;UBERON:0005068,1.04e-08,56;UBERON:0006241,1.04e-08,56;UBERON:0007135,1.04e-08,56;UBERON:0007023,8.86e-08,114;UBERON:0002680,7.48e-07,9;UBERON:0000125,7.48e-07,9;UBERON:0002308,7.48e-07,9;UBERON:0001895,7.48e-07,9;UBERON:0010092,7.48e-07,9 | |||
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|short_description=p2@PSD2 | |||
}} |
Revision as of 13:29, 13 September 2013
Short description: | p2@PSD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_PSD2_5end |
Coexpression cluster: | NA |
Association with transcript: | -181bp_to_ENST00000274710, NM_032289, uc003leu.1_5end |
EntrezGene: | PSD2 |
HGNC: | 19092 |
UniProt: | Q9BQI7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
diencephalon | 4.86e-29 | 7 |
future diencephalon | 4.86e-29 | 7 |
locus ceruleus | 4.32e-26 | 2 |
brainstem nucleus | 4.32e-26 | 2 |
hindbrain nucleus | 4.32e-26 | 2 |
dorsal plus ventral thalamus | 7.14e-26 | 2 |
thalamic complex | 7.14e-26 | 2 |
pons | 6.76e-18 | 3 |
regional part of diencephalon | 1.13e-13 | 4 |
brain | 3.68e-12 | 68 |
future brain | 3.68e-12 | 68 |
central nervous system | 2.17e-10 | 81 |
brainstem | 1.22e-09 | 6 |
nervous system | 1.88e-09 | 89 |
regional part of nervous system | 3.82e-09 | 53 |
regional part of brain | 3.82e-09 | 53 |
neural tube | 1.04e-08 | 56 |
neural rod | 1.04e-08 | 56 |
future spinal cord | 1.04e-08 | 56 |
neural keel | 1.04e-08 | 56 |
adult organism | 8.86e-08 | 114 |
regional part of metencephalon | 7.48e-07 | 9 |
neural nucleus | 7.48e-07 | 9 |
nucleus of brain | 7.48e-07 | 9 |
metencephalon | 7.48e-07 | 9 |
future metencephalon | 7.48e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.