FFCP PHASE1:Mm9::chr17:25707767..25707793,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72834|HGNC=|MCL_coexpression_id=2197|UniProt=|association_with_transcript=11bp_to_NR_045176_5end|description=CAGE_peak_1_at_2810468N07Rik_5end|id=chr17:25707767..25707793,+|ontology_enrichment_celltype=CL:0000221!1.28e-10!44;CL:0000133!1.28e-10!44;CL:0002319!2.78e-10!43;CL:0000540!8.90e-10!33;CL:0000047!8.90e-10!33;CL:0000031!8.90e-10!33;CL:0000404!8.90e-10!33;CL:0000055!3.52e-08!50;CL:0000393!1.69e-07!39;CL:0000211!1.69e-07!39|ontology_enrichment_celltype_v019_2=CL:0000540,1.98e-10,33;CL:0000047,1.98e-10,33;CL:0000031,1.98e-10,33;CL:0000404,1.98e-10,33;CL:0000221,5.25e-10,44;CL:0000133,5.25e-10,44;CL:0002319,1.26e-09,43;CL:0000393,4.21e-08,39;CL:0000211,4.21e-08,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.50e-24!73;UBERON:0005743!1.50e-24!73;UBERON:0004121!4.93e-24!102;UBERON:0000924!4.93e-24!102;UBERON:0006601!4.93e-24!102;UBERON:0000073!1.13e-23!75;UBERON:0001016!1.13e-23!75;UBERON:0002346!2.86e-20!71;UBERON:0003075!2.86e-20!71;UBERON:0007284!2.86e-20!71;UBERON:0000033!1.62e-19!63;UBERON:0000955!1.26e-16!50;UBERON:0006238!1.26e-16!50;UBERON:0001049!1.85e-16!52;UBERON:0005068!1.85e-16!52;UBERON:0006241!1.85e-16!52;UBERON:0007135!1.85e-16!52;UBERON:0002616!4.02e-16!49;UBERON:0003056!1.47e-14!49;UBERON:0003080!4.06e-12!40;UBERON:0002780!1.27e-11!39;UBERON:0001890!1.27e-11!39;UBERON:0006240!1.27e-11!39;UBERON:0002020!6.34e-11!34;UBERON:0007811!1.33e-09!86;UBERON:0000153!1.39e-09!94;UBERON:0002791!1.43e-09!29;UBERON:0003528!1.43e-09!29;UBERON:0001893!1.43e-09!29;UBERON:0000956!7.27e-08!21;UBERON:0001869!7.27e-08!21;UBERON:0000203!7.27e-08!21;UBERON:0002619!8.70e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.92e-26,73;UBERON:0004121,8.09e-25,95;UBERON:0000924,8.09e-25,95;UBERON:0006601,8.09e-25,95;UBERON:0001016,8.57e-25,75;UBERON:0002346,5.17e-22,64;UBERON:0003075,5.17e-22,64;UBERON:0007284,5.17e-22,64;UBERON:0010371,6.67e-20,73;UBERON:0000073,1.04e-18,54;UBERON:0001049,2.42e-17,52;UBERON:0005068,2.42e-17,52;UBERON:0006241,2.42e-17,52;UBERON:0007135,2.42e-17,52;UBERON:0010314,4.49e-16,92;UBERON:0003056,1.20e-15,49;UBERON:0000955,1.72e-15,47;UBERON:0006238,1.72e-15,47;UBERON:0002616,6.35e-15,46;UBERON:0003080,9.80e-13,40;UBERON:0002780,3.69e-12,39;UBERON:0001890,3.69e-12,39;UBERON:0006240,3.69e-12,39;UBERON:0002020,3.35e-11,34;UBERON:0003528,1.14e-09,29;UBERON:0002791,1.14e-09,29;UBERON:0001893,1.14e-09,29;UBERON:0000956,5.59e-08,21;UBERON:0001869,5.59e-08,21;UBERON:0000203,5.59e-08,21;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10|phase1_expression=2.7225304007815,15.3549179361319,13.6499771816861,0,0,10.0727563147134,10.9797941079897,1.03298658753261,0.140788722151667,0,0.34243593645101,1.35612670292072,0,0.524522414513984,0,0,0,0.315462165358238,0.274228867211478,0,1.78590909317247,0.397163804803541,1.56719873483361,5.75972722056264,8.48814339948529,21.2465826722557,16.7997178502039,16.8067561494993,0,0,6.87364583031445,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0.367093504323363,0.782391344348039,5.66865406589161,0.659058548203415,0.972149495371417,1.53985063787899,1.43752564364972,0.167782606057736,0,0.672187598284928,1.02903774414379,1.14613375975503,0.515672092277442,1.41621522601718,0.528990979272033,0.633831403506179,0.338844532069132,0,0,0,0,10.7856039786626,18.0582603501131,1.65903379693564,2.29510095163874,1.68259969081106,11.1403883917483,9.93908434282261,4.28717797252339,2.39613677545591,3.67687514644008,15.4162233399144,11.6195477657521,9.5236050618871,0.527545150920775,0.457438218012048,1.04182674111352,15.355064945076,13.5063026407603,14.8214300343506,5.30331453852602,3.98640706237488,0.372798891650601,0.454357159999104,0.604572480854284,0.289864488701678,0.860423876981386,0.679971333707751,0.539703191637817,0,0,0.983110940922263,0,0,0,3.23939865486365,1.28326477414318,5.09610479413291,0,0,0,0,0.22836775943812,0.258937883647172,1.03909497345377,1.21439728736295,1.52232739156071,1.15307748628029,1.05505848386836,1.52865319276416,0.502666365318702,0,0.433798070759735,0,0.485300549842228,0.220841518460394,0,0,2.34224637609238,4.39838084308256,0.510914110417183,0,0.599902730993408,0.127070227073065,7.33974133083631,23.7900313465686,4.77486538028885,8.69121600961382,10.4843337505436,9.97382613885888,17.1975738851823,1.83310854930569,0.248813941220186,0.252722758433675,1.05220927943237,1.56144531555244,1.60931473103431,3.24111833649629,3.16480117455002,3.6739709541717,3.20284300712124,2.34254311399322,4.13925393182425,0.646703978798527,1.32374256117473,0.527853372491847,2.19195732427575,1.11218899690239,1.39300866608867,1.02891068203972,0.796137067273973,0,0.257347907114715,0,1.86413195281952,0.938104239924385,1.2604344302271,1.18372367792605,1.18058539048442,0.925602677324269,0.697601834251224,0.536546802799238,0.583826711835847,0.822799249567402,0,0.648550476366846,0.438599962275997,0.439100230582101,0.402619256281115,5.67782861123144,0.514523061896422,0,1.05780226665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| ||
|EntrezGene=72834 | |||
|HGNC= | |||
|MCL_coexpression_id=2197 | |||
|UniProt= | |||
|association_with_transcript=11bp_to_NR_045176_5end | |||
|description=CAGE_peak_1_at_2810468N07Rik_5end | |||
|id=chr17:25707767..25707793,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.28e-10!44;CL:0000133!1.28e-10!44;CL:0002319!2.78e-10!43;CL:0000540!8.90e-10!33;CL:0000047!8.90e-10!33;CL:0000031!8.90e-10!33;CL:0000404!8.90e-10!33;CL:0000055!3.52e-08!50;CL:0000393!1.69e-07!39;CL:0000211!1.69e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.98e-10,33;CL:0000047,1.98e-10,33;CL:0000031,1.98e-10,33;CL:0000404,1.98e-10,33;CL:0000221,5.25e-10,44;CL:0000133,5.25e-10,44;CL:0002319,1.26e-09,43;CL:0000393,4.21e-08,39;CL:0000211,4.21e-08,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.50e-24!73;UBERON:0005743!1.50e-24!73;UBERON:0004121!4.93e-24!102;UBERON:0000924!4.93e-24!102;UBERON:0006601!4.93e-24!102;UBERON:0000073!1.13e-23!75;UBERON:0001016!1.13e-23!75;UBERON:0002346!2.86e-20!71;UBERON:0003075!2.86e-20!71;UBERON:0007284!2.86e-20!71;UBERON:0000033!1.62e-19!63;UBERON:0000955!1.26e-16!50;UBERON:0006238!1.26e-16!50;UBERON:0001049!1.85e-16!52;UBERON:0005068!1.85e-16!52;UBERON:0006241!1.85e-16!52;UBERON:0007135!1.85e-16!52;UBERON:0002616!4.02e-16!49;UBERON:0003056!1.47e-14!49;UBERON:0003080!4.06e-12!40;UBERON:0002780!1.27e-11!39;UBERON:0001890!1.27e-11!39;UBERON:0006240!1.27e-11!39;UBERON:0002020!6.34e-11!34;UBERON:0007811!1.33e-09!86;UBERON:0000153!1.39e-09!94;UBERON:0002791!1.43e-09!29;UBERON:0003528!1.43e-09!29;UBERON:0001893!1.43e-09!29;UBERON:0000956!7.27e-08!21;UBERON:0001869!7.27e-08!21;UBERON:0000203!7.27e-08!21;UBERON:0002619!8.70e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.92e-26,73;UBERON:0004121,8.09e-25,95;UBERON:0000924,8.09e-25,95;UBERON:0006601,8.09e-25,95;UBERON:0001016,8.57e-25,75;UBERON:0002346,5.17e-22,64;UBERON:0003075,5.17e-22,64;UBERON:0007284,5.17e-22,64;UBERON:0010371,6.67e-20,73;UBERON:0000073,1.04e-18,54;UBERON:0001049,2.42e-17,52;UBERON:0005068,2.42e-17,52;UBERON:0006241,2.42e-17,52;UBERON:0007135,2.42e-17,52;UBERON:0010314,4.49e-16,92;UBERON:0003056,1.20e-15,49;UBERON:0000955,1.72e-15,47;UBERON:0006238,1.72e-15,47;UBERON:0002616,6.35e-15,46;UBERON:0003080,9.80e-13,40;UBERON:0002780,3.69e-12,39;UBERON:0001890,3.69e-12,39;UBERON:0006240,3.69e-12,39;UBERON:0002020,3.35e-11,34;UBERON:0003528,1.14e-09,29;UBERON:0002791,1.14e-09,29;UBERON:0001893,1.14e-09,29;UBERON:0000956,5.59e-08,21;UBERON:0001869,5.59e-08,21;UBERON:0000203,5.59e-08,21;UBERON:0002021,1.10e-07,10;UBERON:0000411,1.10e-07,10;UBERON:0001950,1.10e-07,10 | |||
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| |||
|short_description=p1@2810468N07Rik | |||
}} |
Revision as of 13:46, 13 September 2013
Short description: | p1@2810468N07Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2810468N07Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:2197 |
Association with transcript: | 11bp_to_NR_045176_5end |
EntrezGene: | 2810468N07Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.98e-10 | 33 |
neuronal stem cell | 1.98e-10 | 33 |
neuroblast | 1.98e-10 | 33 |
electrically signaling cell | 1.98e-10 | 33 |
ectodermal cell | 5.25e-10 | 44 |
neurectodermal cell | 5.25e-10 | 44 |
neural cell | 1.26e-09 | 43 |
electrically responsive cell | 4.21e-08 | 39 |
electrically active cell | 4.21e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.92e-26 | 73 |
ectoderm-derived structure | 8.09e-25 | 95 |
ectoderm | 8.09e-25 | 95 |
presumptive ectoderm | 8.09e-25 | 95 |
nervous system | 8.57e-25 | 75 |
neurectoderm | 5.17e-22 | 64 |
neural plate | 5.17e-22 | 64 |
presumptive neural plate | 5.17e-22 | 64 |
ecto-epithelium | 6.67e-20 | 73 |
regional part of nervous system | 1.04e-18 | 54 |
neural tube | 2.42e-17 | 52 |
neural rod | 2.42e-17 | 52 |
future spinal cord | 2.42e-17 | 52 |
neural keel | 2.42e-17 | 52 |
structure with developmental contribution from neural crest | 4.49e-16 | 92 |
pre-chordal neural plate | 1.20e-15 | 49 |
brain | 1.72e-15 | 47 |
future brain | 1.72e-15 | 47 |
regional part of brain | 6.35e-15 | 46 |
anterior neural tube | 9.80e-13 | 40 |
regional part of forebrain | 3.69e-12 | 39 |
forebrain | 3.69e-12 | 39 |
future forebrain | 3.69e-12 | 39 |
gray matter | 3.35e-11 | 34 |
brain grey matter | 1.14e-09 | 29 |
regional part of telencephalon | 1.14e-09 | 29 |
telencephalon | 1.14e-09 | 29 |
cerebral cortex | 5.59e-08 | 21 |
cerebral hemisphere | 5.59e-08 | 21 |
pallium | 5.59e-08 | 21 |
occipital lobe | 1.10e-07 | 10 |
visual cortex | 1.10e-07 | 10 |
neocortex | 1.10e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.