FFCP PHASE1:Mm9::chr2:158235656..158235671,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=228850|HGNC=|MCL_coexpression_id=1|UniProt=E9Q0J2|association_with_transcript=-15bp_to_ENSMUST00000109485_5end|description=CAGE_peak_4_at_Ralgapb_5end|id=chr2:158235656..158235671,+|ontology_enrichment_celltype=CL:0000540!1.16e-07!33;CL:0000047!1.16e-07!33;CL:0000031!1.16e-07!33;CL:0000404!1.16e-07!33|ontology_enrichment_celltype_v019_2=CL:0000540,7.52e-08,33;CL:0000047,7.52e-08,33;CL:0000031,7.52e-08,33;CL:0000404,7.52e-08,33;CL:0000117,6.45e-07,23;CL:0000337,6.45e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.07e-17!102;UBERON:0000924!2.07e-17!102;UBERON:0006601!2.07e-17!102;UBERON:0000073!5.12e-15!75;UBERON:0001016!5.12e-15!75;UBERON:0001017!3.71e-14!73;UBERON:0005743!3.71e-14!73;UBERON:0002346!5.01e-14!71;UBERON:0003075!5.01e-14!71;UBERON:0007284!5.01e-14!71;UBERON:0000033!9.61e-12!63;UBERON:0001049!4.04e-11!52;UBERON:0005068!4.04e-11!52;UBERON:0006241!4.04e-11!52;UBERON:0007135!4.04e-11!52;UBERON:0000955!2.27e-10!50;UBERON:0006238!2.27e-10!50;UBERON:0002616!4.76e-10!49;UBERON:0002020!2.09e-09!34;UBERON:0003056!1.73e-08!49;UBERON:0002791!2.72e-07!29;UBERON:0003528!2.72e-07!29;UBERON:0001893!2.72e-07!29;UBERON:0003080!2.82e-07!40;UBERON:0002780!8.02e-07!39;UBERON:0001890!8.02e-07!39;UBERON:0006240!8.02e-07!39|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.55e-18,95;UBERON:0000924,1.55e-18,95;UBERON:0006601,1.55e-18,95;UBERON:0001016,6.54e-18,75;UBERON:0001017,7.98e-17,73;UBERON:0002346,1.33e-14,64;UBERON:0003075,1.33e-14,64;UBERON:0007284,1.33e-14,64;UBERON:0010371,2.97e-14,73;UBERON:0000073,4.35e-14,54;UBERON:0001049,9.82e-13,52;UBERON:0005068,9.82e-13,52;UBERON:0006241,9.82e-13,52;UBERON:0007135,9.82e-13,52;UBERON:0010314,1.32e-11,92;UBERON:0002020,5.53e-10,34;UBERON:0000955,7.65e-10,47;UBERON:0006238,7.65e-10,47;UBERON:0002616,1.85e-09,46;UBERON:0003056,5.12e-09,49;UBERON:0003080,5.82e-08,40;UBERON:0003528,2.07e-07,29;UBERON:0002791,2.07e-07,29;UBERON:0001893,2.07e-07,29;UBERON:0002780,2.08e-07,39;UBERON:0001890,2.08e-07,39;UBERON:0006240,2.08e-07,39;UBERON:0002021,2.63e-07,10;UBERON:0000411,2.63e-07,10;UBERON:0001950,2.63e-07,10|phase1_expression=1.12104192973356,0.348975407639361,1.36499771816861,1.20985684522732,1.50268718983904,0.503637815735669,0.700837921786577,0,0.563154888606667,1.40438715793196,0.856089841127525,0.398860794976682,0.513602189793617,0.34968160967599,0,0.202475267389826,0,0.315462165358238,0.274228867211478,0.42438965179803,1.9559956734746,0.198581902401771,0.522399578277871,0.639969691173627,0.68822784320151,0.57423196411502,0.430761996159075,0.215471232685889,0.190023419456374,0.504060259519861,0.443461021310609,0,0,0,0.577703239502549,0.332469290716985,0.204169356262369,0.837063261473815,0.7813353445238,1.0470474879476,0,1.36609096991689,0.971020706062307,0.881277725829041,0.709638518536602,0.183546752161682,0,0.872100625521786,0.219686182734472,0.972149495371417,0,0,0.167782606057736,0,0,0.514518872071894,0.286533439938757,0,2.22548106945558,2.11596391708813,1.90149421051854,0,0.889294796111139,0,0,0,0.599200221036809,1.15265491596466,0.933206510776299,0.810035629990144,0.630974884054146,1.71390590642282,2.42955395046775,0.61245399607477,0.670918297127655,0,3.30347642998166,4.97980618532232,4.45458946443106,2.2420668914133,2.19570344645783,1.04182674111352,3.35019598801657,3.37657566019008,3.97275444219706,2.06240009831567,2.27794689278565,2.05039390407831,2.04460721999597,1.96486056277642,1.73918693221007,0,0,0,0,0.896053774194671,0.561777680527007,0.340860645156116,0.259786004602869,0.70667914902068,1.40843419776681,2.56652954828636,0,0,1.73192832808971,0.760079596425296,0.505524445014783,1.02765491747154,0.776813650941515,0.742210695324124,0.693941307064543,2.43572382649713,1.84492397804847,0.753613202763113,1.99900802130698,1.25666591329675,0.988779870937496,1.44599356919912,0,0.323533699894818,0.883366073841574,0,0,3.22058876712702,2.72280718857492,1.02182822083437,0.11981512450592,0,0.762421362438388,3.2953940669061,3.66000482254901,1.13088916901578,3.99795936442236,2.04572365864264,3.94797284663164,4.38051410282946,0.305518091550949,0.870848794270651,2.77995034277042,2.52530227063769,1.17108398666433,0.689706313300419,1.44049703844279,1.05493372485001,1.36072998302656,1.0249097622788,0.749613796477831,2.06962696591213,0.431135985865684,1.32374256117473,1.05570674498369,0.219195732427575,1.11218899690239,2.089512999133,0.823128545631774,0.796137067273973,0,1.02939162845886,0.284163499395593,0.414251545071004,0.938104239924385,0.36012412292203,1.18372367792605,0,0.154267112887378,1.86027155800326,0,0.817357396570186,1.15191894939436,0.492502392237286,1.62137619091711,0.730999937126662,0.439100230582101,0.805238512562231,2.10289948564127,2.16099685996497,1.32167513193519,1.58670339998127,0.426576501070468,0.928946687441754,1.03093969057675,0.403367049246685,1.11189021922435,0.570676878337677,0,1.15289268306808,1.75934646160189,0.596869416123452,0.38992817423824,0.898819408654221,0.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| ||
|EntrezGene=228850 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=E9Q0J2 | |||
|association_with_transcript=-15bp_to_ENSMUST00000109485_5end | |||
|description=CAGE_peak_4_at_Ralgapb_5end | |||
|id=chr2:158235656..158235671,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.16e-07!33;CL:0000047!1.16e-07!33;CL:0000031!1.16e-07!33;CL:0000404!1.16e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,7.52e-08,33;CL:0000047,7.52e-08,33;CL:0000031,7.52e-08,33;CL:0000404,7.52e-08,33;CL:0000117,6.45e-07,23;CL:0000337,6.45e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.07e-17!102;UBERON:0000924!2.07e-17!102;UBERON:0006601!2.07e-17!102;UBERON:0000073!5.12e-15!75;UBERON:0001016!5.12e-15!75;UBERON:0001017!3.71e-14!73;UBERON:0005743!3.71e-14!73;UBERON:0002346!5.01e-14!71;UBERON:0003075!5.01e-14!71;UBERON:0007284!5.01e-14!71;UBERON:0000033!9.61e-12!63;UBERON:0001049!4.04e-11!52;UBERON:0005068!4.04e-11!52;UBERON:0006241!4.04e-11!52;UBERON:0007135!4.04e-11!52;UBERON:0000955!2.27e-10!50;UBERON:0006238!2.27e-10!50;UBERON:0002616!4.76e-10!49;UBERON:0002020!2.09e-09!34;UBERON:0003056!1.73e-08!49;UBERON:0002791!2.72e-07!29;UBERON:0003528!2.72e-07!29;UBERON:0001893!2.72e-07!29;UBERON:0003080!2.82e-07!40;UBERON:0002780!8.02e-07!39;UBERON:0001890!8.02e-07!39;UBERON:0006240!8.02e-07!39 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.55e-18,95;UBERON:0000924,1.55e-18,95;UBERON:0006601,1.55e-18,95;UBERON:0001016,6.54e-18,75;UBERON:0001017,7.98e-17,73;UBERON:0002346,1.33e-14,64;UBERON:0003075,1.33e-14,64;UBERON:0007284,1.33e-14,64;UBERON:0010371,2.97e-14,73;UBERON:0000073,4.35e-14,54;UBERON:0001049,9.82e-13,52;UBERON:0005068,9.82e-13,52;UBERON:0006241,9.82e-13,52;UBERON:0007135,9.82e-13,52;UBERON:0010314,1.32e-11,92;UBERON:0002020,5.53e-10,34;UBERON:0000955,7.65e-10,47;UBERON:0006238,7.65e-10,47;UBERON:0002616,1.85e-09,46;UBERON:0003056,5.12e-09,49;UBERON:0003080,5.82e-08,40;UBERON:0003528,2.07e-07,29;UBERON:0002791,2.07e-07,29;UBERON:0001893,2.07e-07,29;UBERON:0002780,2.08e-07,39;UBERON:0001890,2.08e-07,39;UBERON:0006240,2.08e-07,39;UBERON:0002021,2.63e-07,10;UBERON:0000411,2.63e-07,10;UBERON:0001950,2.63e-07,10 | |||
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| |||
|short_description=p4@Ralgapb | |||
}} |
Revision as of 22:42, 13 September 2013
Short description: | p4@Ralgapb |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ralgapb_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -15bp_to_ENSMUST00000109485_5end |
EntrezGene: | Ralgapb |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 7.52e-08 | 33 |
neuronal stem cell | 7.52e-08 | 33 |
neuroblast | 7.52e-08 | 33 |
electrically signaling cell | 7.52e-08 | 33 |
CNS neuron (sensu Vertebrata) | 6.45e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.45e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.55e-18 | 95 |
ectoderm | 1.55e-18 | 95 |
presumptive ectoderm | 1.55e-18 | 95 |
nervous system | 6.54e-18 | 75 |
central nervous system | 7.98e-17 | 73 |
neurectoderm | 1.33e-14 | 64 |
neural plate | 1.33e-14 | 64 |
presumptive neural plate | 1.33e-14 | 64 |
ecto-epithelium | 2.97e-14 | 73 |
regional part of nervous system | 4.35e-14 | 54 |
neural tube | 9.82e-13 | 52 |
neural rod | 9.82e-13 | 52 |
future spinal cord | 9.82e-13 | 52 |
neural keel | 9.82e-13 | 52 |
structure with developmental contribution from neural crest | 1.32e-11 | 92 |
gray matter | 5.53e-10 | 34 |
brain | 7.65e-10 | 47 |
future brain | 7.65e-10 | 47 |
regional part of brain | 1.85e-09 | 46 |
pre-chordal neural plate | 5.12e-09 | 49 |
anterior neural tube | 5.82e-08 | 40 |
brain grey matter | 2.07e-07 | 29 |
regional part of telencephalon | 2.07e-07 | 29 |
telencephalon | 2.07e-07 | 29 |
regional part of forebrain | 2.08e-07 | 39 |
forebrain | 2.08e-07 | 39 |
future forebrain | 2.08e-07 | 39 |
occipital lobe | 2.63e-07 | 10 |
visual cortex | 2.63e-07 | 10 |
neocortex | 2.63e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.