FFCP PHASE1:Mm9::chr2:181255238..181255268,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=13002|HGNC=|MCL_coexpression_id=1|UniProt=P60904|association_with_transcript=0bp_to_ENSMUST00000108797_5end|description=CAGE_peak_1_at_Dnajc5_5end|id=chr2:181255238..181255268,+|ontology_enrichment_celltype=CL:0000117!5.44e-13!23;CL:0000337!5.44e-13!23;CL:0000540!9.12e-11!33;CL:0000047!9.12e-11!33;CL:0000031!9.12e-11!33;CL:0000404!9.12e-11!33;CL:0000393!1.98e-09!39;CL:0000211!1.98e-09!39;CL:0002319!4.53e-08!43;CL:0000221!1.46e-07!44;CL:0000133!1.46e-07!44;CL:0000055!6.98e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,5.44e-13,23;CL:0000337,5.44e-13,23;CL:0000540,9.12e-11,33;CL:0000047,9.12e-11,33;CL:0000031,9.12e-11,33;CL:0000404,9.12e-11,33;CL:0000393,1.98e-09,39;CL:0000211,1.98e-09,39;CL:0002319,4.53e-08,43;CL:0000221,1.46e-07,44;CL:0000133,1.46e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!5.61e-19!34;UBERON:0001017!1.32e-18!73;UBERON:0005743!1.32e-18!73;UBERON:0001049!1.46e-17!52;UBERON:0005068!1.46e-17!52;UBERON:0006241!1.46e-17!52;UBERON:0007135!1.46e-17!52;UBERON:0000073!4.29e-17!75;UBERON:0001016!4.29e-17!75;UBERON:0000955!1.62e-16!50;UBERON:0006238!1.62e-16!50;UBERON:0002616!5.22e-16!49;UBERON:0002791!6.53e-16!29;UBERON:0003528!6.53e-16!29;UBERON:0001893!6.53e-16!29;UBERON:0007811!3.94e-14!86;UBERON:0000033!9.13e-13!63;UBERON:0003080!6.35e-12!40;UBERON:0000956!9.90e-12!21;UBERON:0001869!9.90e-12!21;UBERON:0000203!9.90e-12!21;UBERON:0000153!1.96e-11!94;UBERON:0002780!2.45e-11!39;UBERON:0001890!2.45e-11!39;UBERON:0006240!2.45e-11!39;UBERON:0000064!2.68e-11!99;UBERON:0002346!4.67e-11!71;UBERON:0003075!4.67e-11!71;UBERON:0007284!4.67e-11!71;UBERON:0004121!9.57e-11!102;UBERON:0000924!9.57e-11!102;UBERON:0006601!9.57e-11!102;UBERON:0002619!4.02e-10!17;UBERON:0003056!7.08e-10!49;UBERON:0002021!4.48e-08!10;UBERON:0000411!4.48e-08!10;UBERON:0001950!4.48e-08!10;UBERON:0000477!7.21e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.17e-19,54;UBERON:0002020,5.61e-19,34;UBERON:0001017,1.32e-18,73;UBERON:0001049,1.46e-17,52;UBERON:0005068,1.46e-17,52;UBERON:0006241,1.46e-17,52;UBERON:0007135,1.46e-17,52;UBERON:0001016,4.29e-17,75;UBERON:0003528,6.53e-16,29;UBERON:0002791,6.53e-16,29;UBERON:0001893,6.53e-16,29;UBERON:0002346,5.86e-15,64;UBERON:0003075,5.86e-15,64;UBERON:0007284,5.86e-15,64;UBERON:0000955,1.32e-14,47;UBERON:0006238,1.32e-14,47;UBERON:0002616,4.13e-14,46;UBERON:0004121,9.39e-14,95;UBERON:0000924,9.39e-14,95;UBERON:0006601,9.39e-14,95;UBERON:0010371,1.31e-12,73;UBERON:0003080,6.35e-12,40;UBERON:0000956,9.90e-12,21;UBERON:0001869,9.90e-12,21;UBERON:0000203,9.90e-12,21;UBERON:0002780,2.45e-11,39;UBERON:0001890,2.45e-11,39;UBERON:0006240,2.45e-11,39;UBERON:0002619,4.02e-10,17;UBERON:0003056,7.08e-10,49;UBERON:0010314,1.40e-09,92;UBERON:0002021,4.48e-08,10;UBERON:0000411,4.48e-08,10;UBERON:0001950,4.48e-08,10|phase1_expression=53.3295660858964,57.9299176681339,55.0549079661339,66.5421264875026,65.1164448930251,47.5098339510648,51.6283935716112,83.5427902666998,135.720328154207,132.012392845604,70.3705849406825,75.8633232045649,94.5028029220256,93.9769326004222,49.3002447487181,47.9866383713888,30.0811607595103,81.8624319104627,86.3820931716154,79.3608648862317,70.2457576647836,41.3050356995683,35.2619715337563,59.6771737019407,54.8288181750536,48.8097169497767,52.9837255275662,48.0500848889533,52.0664169310464,52.1702368603057,41.0201444712314,39.3719017544971,29.5231098040594,47.5445043046316,20.5084650023405,22.9403810594719,22.0502904763359,134.767185097284,101.573594788094,93.1872264273361,175.881214921273,178.274871574154,127.203712494162,58.9197108125702,55.1490505834159,46.4373282969054,67.2856556139314,61.4830940992859,63.2696206275279,78.5496792260105,63.4138489962892,50.3133975277401,84.7302160591569,113.15649415377,115.280173105865,60.4559674684475,55.30095390818,59.8179627041833,169.743510661203,172.980050221955,201.558386314965,49.8101462141624,59.5827513394463,56.6936821887281,83.0647744556259,55.4174489657958,45.8388169093159,41.4955769747279,85.0254820929517,97.4742874754807,91.2810332264998,196.813528254221,196.131264365033,106.07703212015,94.0244070688899,136.963599204893,260.974637968551,211.450231869071,204.911115363829,168.682562006918,143.91006338659,153.669444314244,193.753001306958,175.019171719852,160.896554908981,224.506982130935,187.076388570021,157.88033061403,47.1774184465737,37.0300644523249,68.1181548448943,45.6024654800135,84.3164453797611,44.7953649059388,64.3278653273192,58.2434953226536,54.2115461708562,48.9135025799026,38.9679006904303,42.4007489412408,45.6332680076445,57.746914836443,84.0857291031931,85.3280043783997,74.9059001898801,76.0079596425296,71.2789467470844,60.2890884916637,100.467898855103,51.3609801164294,37.9932865617838,49.3234074865669,43.5863289813951,37.529937497603,52.2093859682529,41.4699751387929,90.7205531585152,77.0714572383129,46.8843592533433,48.2065212843279,45.4933528028411,32.4866419600599,82.0123749359738,151.953233648993,123.573557019938,57.9887515323502,45.050486814226,26.3957201637099,38.5022788031386,209.856685806157,177.052733290808,146.5129745636,208.763008550924,171.073640953991,177.035413964745,166.459535907519,48.7810552843015,59.7153458928446,79.1022233897402,82.7036493633843,38.9060124458484,36.5544346049222,45.7357809705587,48.3762465252645,62.9337617149783,65.2098836249885,59.781700269107,115.64040672034,40.95791865724,40.0904889955777,40.2928074335443,39.8936233018186,57.5557805896988,44.9245294813595,55.1496125573288,41.7971960318836,38.6217253022279,36.5434028102895,39.2145629165918,51.57431736134,51.126681075879,50.5974392705452,46.6387129102864,57.6519199019893,55.2276264136814,55.8081467400979,63.3125227303101,58.2659058412176,55.2921095709294,61.5627990296607,72.6376533530867,65.4975943665489,67.4018853943525,60.2586820234069,172.648047771148,126.778482451278,72.6921322564356,53.4190144660359,47.3499916188219,48.3052277469712,46.1345511533094,45.5804765648754,46.9217672512676,50.0293396676031,60.265190816153,66.8677756179484,52.2777234304561,60.681723972551,51.2755549123286,52.1315257019448,47.5503709724327,53.7681437786791,40.2095950020533,41.9292041277705,48.4643263394246,46.025200093041,44.4151195613863,55.6878409929129,58.4305603028137,54.910975048412,53.8505636495916,57.0094897318718,55.733093892384,38.3743743147016,40.2945939982066,29.4569367224158,40.9777445204776,29.1824363300424,38.193877767213,42.8667244801708,44.5871873631347,32.9473695825698,50.3188722845741,45.0290546678889,55.2306681412772,54.304458758629,47.7197119968286,38.5954817090694,75.0097952076415,32.5925228245234,38.6226994167601,43.6244870442234,41.5401739470649,47.4042708560339,49.5130773042909,57.9546934137663,66.5220308128126,66.4394068946325,61.230631164475,66.6923690893054,59.576318743734,65.5260235374247,94.9985088817415,131.625175484128,76.2234623179506,58.2226534702986,196.192820965082,183.905136263167,45.0821099785857,58.0683132570058,57.4224959337587,54.6614242015294,68.5046404790301,51.8562291557038,54.3628764761042,66.5229847353756,59.1023624445346,64.2962887404886,66.408346695016,157.768766363107,49.9629099933106,44.3383353131466,48.5403138873657,53.1203795971564,62.3902150197825,39.330463057107,36.8834739496996,52.9980274114074,62.8993031836046,54.4160211860752,50.3935171678031,37.8075078656606,45.6316644332443,53.4102120911529,69.5762816594992,61.8813259489121,51.7468200745758,45.0152735078276,51.3553974617535,48.0114958470767,46.6404814479179,53.8673829158253,46.5673728304002,52.6724361968257,55.6171948110994,72.8702323771541,67.7022182028733,58.2048472883425,63.4555196914909,44.5712515219072,47.7489376012546,43.1690566329511,52.1750697567433,166.882771809459,54.507810974515,51.1839432548792,52.039662190889,48.9757988212197,50.3034758013373,51.7038671446741,52.863291728089,55.9805809294632,56.2473893384005,57.2802370809068,34.9551272907155,40.257254491116,43.7421630328295,45.3721602351397,52.4070152990826,48.146571659381,60.4196761352206,41.3574388334767,55.4752085688873,53.4351809254756,53.5508291749981,39.1733350635224,35.7390339387331,47.2516387676036,39.1354265137525,37.339303733462,55.0405449248586,40.2331549167806,46.3478302361642,40.586132298769,33.1234507196545,96.3833917915944,34.8687370299082,41.3925157374254,45.3423672192505,46.1888874822102,48.2795692118474,55.5302976782256,56.1220203263393,58.2576416200812,69.8054348959799,71.4857652620199,88.4917557116952,78.9899219867105,87.1901690274504,55.3222136021116,79.4709713079152,69.2590973025152,74.5407696656508,54.6726551111099,67.1903262115231,49.6340901764288,46.0892015019992,61.6933687963497,232.677759158231,225.09904065201,236.032951537031,265.341313538654,266.49710019078,257.589319009888,218.032267574873,202.644541450899,206.179796087813,228.850057794304,50.6482256210782,42.2966365805093,41.3175325925005,54.9421180574345,67.2858252035823,66.1836630420051,68.0074987072943,64.282937858535,57.7654577265267,58.8784503409648,59.0606768744259,60.3604292435444,59.2750742284356,55.7659077446411,52.725760501253,47.1530754370243,56.3197824091998,53.4358540684463,60.5766274180861,55.6411918108022,55.8876881388227,69.393040208301,59.6090474868302,63.5163840683276,55.5245344450451,57.791777190015,58.3540233464145,57.6122668048876,62.6056964829423,65.6536457839554,60.9783993158255,60.6787611433471,49.1077251803627,52.6785260032284,63.2733684018144,79.4397637842668,57.5471756775705,70.0479636197452,65.994474563751,65.7362428976156,60.2856372613096|short_description=p1@Dnajc5}} | ||
|EntrezGene=13002 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=P60904 | |||
|association_with_transcript=0bp_to_ENSMUST00000108797_5end | |||
|description=CAGE_peak_1_at_Dnajc5_5end | |||
|id=chr2:181255238..181255268,+ | |||
|ontology_enrichment_celltype=CL:0000117!5.44e-13!23;CL:0000337!5.44e-13!23;CL:0000540!9.12e-11!33;CL:0000047!9.12e-11!33;CL:0000031!9.12e-11!33;CL:0000404!9.12e-11!33;CL:0000393!1.98e-09!39;CL:0000211!1.98e-09!39;CL:0002319!4.53e-08!43;CL:0000221!1.46e-07!44;CL:0000133!1.46e-07!44;CL:0000055!6.98e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.44e-13,23;CL:0000337,5.44e-13,23;CL:0000540,9.12e-11,33;CL:0000047,9.12e-11,33;CL:0000031,9.12e-11,33;CL:0000404,9.12e-11,33;CL:0000393,1.98e-09,39;CL:0000211,1.98e-09,39;CL:0002319,4.53e-08,43;CL:0000221,1.46e-07,44;CL:0000133,1.46e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0000073,5.17e-19,54;UBERON:0002020,5.61e-19,34;UBERON:0001017,1.32e-18,73;UBERON:0001049,1.46e-17,52;UBERON:0005068,1.46e-17,52;UBERON:0006241,1.46e-17,52;UBERON:0007135,1.46e-17,52;UBERON:0001016,4.29e-17,75;UBERON:0003528,6.53e-16,29;UBERON:0002791,6.53e-16,29;UBERON:0001893,6.53e-16,29;UBERON:0002346,5.86e-15,64;UBERON:0003075,5.86e-15,64;UBERON:0007284,5.86e-15,64;UBERON:0000955,1.32e-14,47;UBERON:0006238,1.32e-14,47;UBERON:0002616,4.13e-14,46;UBERON:0004121,9.39e-14,95;UBERON:0000924,9.39e-14,95;UBERON:0006601,9.39e-14,95;UBERON:0010371,1.31e-12,73;UBERON:0003080,6.35e-12,40;UBERON:0000956,9.90e-12,21;UBERON:0001869,9.90e-12,21;UBERON:0000203,9.90e-12,21;UBERON:0002780,2.45e-11,39;UBERON:0001890,2.45e-11,39;UBERON:0006240,2.45e-11,39;UBERON:0002619,4.02e-10,17;UBERON:0003056,7.08e-10,49;UBERON:0010314,1.40e-09,92;UBERON:0002021,4.48e-08,10;UBERON:0000411,4.48e-08,10;UBERON:0001950,4.48e-08,10 | |||
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| |||
|short_description=p1@Dnajc5 | |||
}} |
Revision as of 23:16, 13 September 2013
Short description: | p1@Dnajc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Dnajc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000108797_5end |
EntrezGene: | Dnajc5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.44e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.44e-13 | 23 |
neuron | 9.12e-11 | 33 |
neuronal stem cell | 9.12e-11 | 33 |
neuroblast | 9.12e-11 | 33 |
electrically signaling cell | 9.12e-11 | 33 |
electrically responsive cell | 1.98e-09 | 39 |
electrically active cell | 1.98e-09 | 39 |
neural cell | 4.53e-08 | 43 |
ectodermal cell | 1.46e-07 | 44 |
neurectodermal cell | 1.46e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 5.17e-19 | 54 |
gray matter | 5.61e-19 | 34 |
central nervous system | 1.32e-18 | 73 |
neural tube | 1.46e-17 | 52 |
neural rod | 1.46e-17 | 52 |
future spinal cord | 1.46e-17 | 52 |
neural keel | 1.46e-17 | 52 |
nervous system | 4.29e-17 | 75 |
brain grey matter | 6.53e-16 | 29 |
regional part of telencephalon | 6.53e-16 | 29 |
telencephalon | 6.53e-16 | 29 |
neurectoderm | 5.86e-15 | 64 |
neural plate | 5.86e-15 | 64 |
presumptive neural plate | 5.86e-15 | 64 |
brain | 1.32e-14 | 47 |
future brain | 1.32e-14 | 47 |
regional part of brain | 4.13e-14 | 46 |
ectoderm-derived structure | 9.39e-14 | 95 |
ectoderm | 9.39e-14 | 95 |
presumptive ectoderm | 9.39e-14 | 95 |
ecto-epithelium | 1.31e-12 | 73 |
anterior neural tube | 6.35e-12 | 40 |
cerebral cortex | 9.90e-12 | 21 |
cerebral hemisphere | 9.90e-12 | 21 |
pallium | 9.90e-12 | 21 |
regional part of forebrain | 2.45e-11 | 39 |
forebrain | 2.45e-11 | 39 |
future forebrain | 2.45e-11 | 39 |
regional part of cerebral cortex | 4.02e-10 | 17 |
pre-chordal neural plate | 7.08e-10 | 49 |
structure with developmental contribution from neural crest | 1.40e-09 | 92 |
occipital lobe | 4.48e-08 | 10 |
visual cortex | 4.48e-08 | 10 |
neocortex | 4.48e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.