FFCP PHASE1:Mm9::chr2:7223539..7223546,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:7223539..7223546,-|id=chr2:7223539..7223546,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002021!9.66e-42!10;UBERON:0000411!9.66e-42!10;UBERON:0001950!9.66e-42!10;UBERON:0002619!6.23e-34!17;UBERON:0000956!7.50e-32!21;UBERON:0001869!7.50e-32!21;UBERON:0000203!7.50e-32!21;UBERON:0002791!6.39e-30!29;UBERON:0003528!6.39e-30!29;UBERON:0001893!6.39e-30!29;UBERON:0002020!3.82e-25!34;UBERON:0002780!1.21e-24!39;UBERON:0001890!1.21e-24!39;UBERON:0006240!1.21e-24!39;UBERON:0003080!5.84e-24!40;UBERON:0003056!1.31e-21!49;UBERON:0000955!3.35e-21!50;UBERON:0006238!3.35e-21!50;UBERON:0002616!4.71e-19!49;UBERON:0000033!2.48e-18!63;UBERON:0001049!8.56e-18!52;UBERON:0005068!8.56e-18!52;UBERON:0006241!8.56e-18!52;UBERON:0007135!8.56e-18!52;UBERON:0002346!5.24e-14!71;UBERON:0003075!5.24e-14!71;UBERON:0007284!5.24e-14!71;UBERON:0001017!1.34e-13!73;UBERON:0005743!1.34e-13!73;UBERON:0000073!3.72e-13!75;UBERON:0001016!3.72e-13!75;UBERON:0007811!1.31e-12!86;UBERON:0000153!2.86e-11!94;UBERON:0004121!3.87e-10!102;UBERON:0000924!3.87e-10!102;UBERON:0006601!3.87e-10!102;UBERON:0000064!5.02e-08!99|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.31e-86,10;UBERON:0000411,1.31e-86,10;UBERON:0001950,1.31e-86,10;UBERON:0002619,6.54e-51,17;UBERON:0000956,3.51e-41,21;UBERON:0001869,3.51e-41,21;UBERON:0000203,3.51e-41,21;UBERON:0003528,9.35e-30,29;UBERON:0002791,9.35e-30,29;UBERON:0001893,9.35e-30,29;UBERON:0002020,2.45e-25,34;UBERON:0002780,4.79e-22,39;UBERON:0001890,4.79e-22,39;UBERON:0006240,4.79e-22,39;UBERON:0003080,1.74e-21,40;UBERON:0002616,1.23e-18,46;UBERON:0000955,3.14e-18,47;UBERON:0006238,3.14e-18,47;UBERON:0003056,1.81e-17,49;UBERON:0001049,1.94e-16,52;UBERON:0005068,1.94e-16,52;UBERON:0006241,1.94e-16,52;UBERON:0007135,1.94e-16,52;UBERON:0000073,8.19e-16,54;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0010371,1.42e-11,73;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0000025,3.40e-07,114|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0.695297280769106,0.511430914660661,0,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,3.22227665555024,3.43737308063638,3.95262319390481,2.05524755931193,3.7769694869485,2.70009000092722,1.80128481289688,4.98456649882625,2.5888015587591,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0.25384382367503,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0|short_description=p@chr2:7223539..7223546,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:7223539..7223546,- | |||
|id=chr2:7223539..7223546,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!9.66e-42!10;UBERON:0000411!9.66e-42!10;UBERON:0001950!9.66e-42!10;UBERON:0002619!6.23e-34!17;UBERON:0000956!7.50e-32!21;UBERON:0001869!7.50e-32!21;UBERON:0000203!7.50e-32!21;UBERON:0002791!6.39e-30!29;UBERON:0003528!6.39e-30!29;UBERON:0001893!6.39e-30!29;UBERON:0002020!3.82e-25!34;UBERON:0002780!1.21e-24!39;UBERON:0001890!1.21e-24!39;UBERON:0006240!1.21e-24!39;UBERON:0003080!5.84e-24!40;UBERON:0003056!1.31e-21!49;UBERON:0000955!3.35e-21!50;UBERON:0006238!3.35e-21!50;UBERON:0002616!4.71e-19!49;UBERON:0000033!2.48e-18!63;UBERON:0001049!8.56e-18!52;UBERON:0005068!8.56e-18!52;UBERON:0006241!8.56e-18!52;UBERON:0007135!8.56e-18!52;UBERON:0002346!5.24e-14!71;UBERON:0003075!5.24e-14!71;UBERON:0007284!5.24e-14!71;UBERON:0001017!1.34e-13!73;UBERON:0005743!1.34e-13!73;UBERON:0000073!3.72e-13!75;UBERON:0001016!3.72e-13!75;UBERON:0007811!1.31e-12!86;UBERON:0000153!2.86e-11!94;UBERON:0004121!3.87e-10!102;UBERON:0000924!3.87e-10!102;UBERON:0006601!3.87e-10!102;UBERON:0000064!5.02e-08!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,1.31e-86,10;UBERON:0000411,1.31e-86,10;UBERON:0001950,1.31e-86,10;UBERON:0002619,6.54e-51,17;UBERON:0000956,3.51e-41,21;UBERON:0001869,3.51e-41,21;UBERON:0000203,3.51e-41,21;UBERON:0003528,9.35e-30,29;UBERON:0002791,9.35e-30,29;UBERON:0001893,9.35e-30,29;UBERON:0002020,2.45e-25,34;UBERON:0002780,4.79e-22,39;UBERON:0001890,4.79e-22,39;UBERON:0006240,4.79e-22,39;UBERON:0003080,1.74e-21,40;UBERON:0002616,1.23e-18,46;UBERON:0000955,3.14e-18,47;UBERON:0006238,3.14e-18,47;UBERON:0003056,1.81e-17,49;UBERON:0001049,1.94e-16,52;UBERON:0005068,1.94e-16,52;UBERON:0006241,1.94e-16,52;UBERON:0007135,1.94e-16,52;UBERON:0000073,8.19e-16,54;UBERON:0002346,2.86e-13,64;UBERON:0003075,2.86e-13,64;UBERON:0007284,2.86e-13,64;UBERON:0010371,1.42e-11,73;UBERON:0001017,1.42e-11,73;UBERON:0001016,2.99e-11,75;UBERON:0010314,4.56e-09,92;UBERON:0004121,9.21e-09,95;UBERON:0000924,9.21e-09,95;UBERON:0006601,9.21e-09,95;UBERON:0000025,3.40e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.251308704225729,0.695297280769106,0.511430914660661,0,0.162241263067758,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,3.22227665555024,3.43737308063638,3.95262319390481,2.05524755931193,3.7769694869485,2.70009000092722,1.80128481289688,4.98456649882625,2.5888015587591,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0,0,0,0,0,0,0,0,0,0,0,0.25384382367503,0,0,0,0,0,0.0985044823755635,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:7223539..7223546,- | |||
}} |
Revision as of 00:28, 14 September 2013
Short description: | p@chr2:7223539..7223546, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:7223539..7223546, - |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 1.31e-86 | 10 |
visual cortex | 1.31e-86 | 10 |
neocortex | 1.31e-86 | 10 |
regional part of cerebral cortex | 6.54e-51 | 17 |
cerebral cortex | 3.51e-41 | 21 |
cerebral hemisphere | 3.51e-41 | 21 |
pallium | 3.51e-41 | 21 |
brain grey matter | 9.35e-30 | 29 |
regional part of telencephalon | 9.35e-30 | 29 |
telencephalon | 9.35e-30 | 29 |
gray matter | 2.45e-25 | 34 |
regional part of forebrain | 4.79e-22 | 39 |
forebrain | 4.79e-22 | 39 |
future forebrain | 4.79e-22 | 39 |
anterior neural tube | 1.74e-21 | 40 |
regional part of brain | 1.23e-18 | 46 |
brain | 3.14e-18 | 47 |
future brain | 3.14e-18 | 47 |
pre-chordal neural plate | 1.81e-17 | 49 |
neural tube | 1.94e-16 | 52 |
neural rod | 1.94e-16 | 52 |
future spinal cord | 1.94e-16 | 52 |
neural keel | 1.94e-16 | 52 |
regional part of nervous system | 8.19e-16 | 54 |
neurectoderm | 2.86e-13 | 64 |
neural plate | 2.86e-13 | 64 |
presumptive neural plate | 2.86e-13 | 64 |
ecto-epithelium | 1.42e-11 | 73 |
central nervous system | 1.42e-11 | 73 |
nervous system | 2.99e-11 | 75 |
structure with developmental contribution from neural crest | 4.56e-09 | 92 |
ectoderm-derived structure | 9.21e-09 | 95 |
ectoderm | 9.21e-09 | 95 |
presumptive ectoderm | 9.21e-09 | 95 |
tube | 3.40e-07 | 114 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.