FFCP PHASE1:Mm9::chr4:126885535..126885547,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=135|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:126885535..126885547,+|id=chr4:126885535..126885547,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002021!1.12e-32!10;UBERON:0000411!1.12e-32!10;UBERON:0001950!1.12e-32!10;UBERON:0002619!5.42e-22!17;UBERON:0000956!2.20e-17!21;UBERON:0001869!2.20e-17!21;UBERON:0000203!2.20e-17!21;UBERON:0002791!9.87e-17!29;UBERON:0003528!9.87e-17!29;UBERON:0001893!9.87e-17!29;UBERON:0002780!5.75e-16!39;UBERON:0001890!5.75e-16!39;UBERON:0006240!5.75e-16!39;UBERON:0000955!1.62e-15!50;UBERON:0006238!1.62e-15!50;UBERON:0003080!1.73e-15!40;UBERON:0002616!6.19e-14!49;UBERON:0002020!7.12e-14!34;UBERON:0003056!7.92e-14!49;UBERON:0000033!4.03e-13!63;UBERON:0001049!7.32e-13!52;UBERON:0005068!7.32e-13!52;UBERON:0006241!7.32e-13!52;UBERON:0007135!7.32e-13!52;UBERON:0001017!7.98e-11!73;UBERON:0005743!7.98e-11!73;UBERON:0000073!1.96e-10!75;UBERON:0001016!1.96e-10!75;UBERON:0002346!9.13e-10!71;UBERON:0003075!9.13e-10!71;UBERON:0007284!9.13e-10!71;UBERON:0007811!1.34e-08!86;UBERON:0004121!1.27e-07!102;UBERON:0000924!1.27e-07!102;UBERON:0006601!1.27e-07!102;UBERON:0000153!1.51e-07!94|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.70e-79,10;UBERON:0000411,4.70e-79,10;UBERON:0001950,4.70e-79,10;UBERON:0002619,2.27e-46,17;UBERON:0000956,1.84e-37,21;UBERON:0001869,1.84e-37,21;UBERON:0000203,1.84e-37,21;UBERON:0003528,5.34e-27,29;UBERON:0002791,5.34e-27,29;UBERON:0001893,5.34e-27,29;UBERON:0002020,5.96e-23,34;UBERON:0002780,6.16e-20,39;UBERON:0001890,6.16e-20,39;UBERON:0006240,6.16e-20,39;UBERON:0003080,2.01e-19,40;UBERON:0000073,2.98e-17,54;UBERON:0002616,8.22e-17,46;UBERON:0000955,1.93e-16,47;UBERON:0006238,1.93e-16,47;UBERON:0003056,9.62e-16,49;UBERON:0001049,8.49e-15,52;UBERON:0005068,8.49e-15,52;UBERON:0006241,8.49e-15,52;UBERON:0007135,8.49e-15,52;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0002346,6.80e-12,64;UBERON:0003075,6.80e-12,64;UBERON:0007284,6.80e-12,64;UBERON:0010371,2.45e-10,73;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0010314,4.89e-08,92|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,0,0,0,0.182975287204819,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0.486723789203273,0,0,0,0,0,0,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,1.38097570952153,1.14579102687879,5.84300819968538,1.37016503954128,1.5107877947794,2.02506750069542,2.2516060161211,1.81256963593682,1.03552062350364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0.409231043169689,0,0,0,0,0,0,0,0|short_description=p@chr4:126885535..126885547,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=135 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:126885535..126885547,+ | |||
|id=chr4:126885535..126885547,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002021!1.12e-32!10;UBERON:0000411!1.12e-32!10;UBERON:0001950!1.12e-32!10;UBERON:0002619!5.42e-22!17;UBERON:0000956!2.20e-17!21;UBERON:0001869!2.20e-17!21;UBERON:0000203!2.20e-17!21;UBERON:0002791!9.87e-17!29;UBERON:0003528!9.87e-17!29;UBERON:0001893!9.87e-17!29;UBERON:0002780!5.75e-16!39;UBERON:0001890!5.75e-16!39;UBERON:0006240!5.75e-16!39;UBERON:0000955!1.62e-15!50;UBERON:0006238!1.62e-15!50;UBERON:0003080!1.73e-15!40;UBERON:0002616!6.19e-14!49;UBERON:0002020!7.12e-14!34;UBERON:0003056!7.92e-14!49;UBERON:0000033!4.03e-13!63;UBERON:0001049!7.32e-13!52;UBERON:0005068!7.32e-13!52;UBERON:0006241!7.32e-13!52;UBERON:0007135!7.32e-13!52;UBERON:0001017!7.98e-11!73;UBERON:0005743!7.98e-11!73;UBERON:0000073!1.96e-10!75;UBERON:0001016!1.96e-10!75;UBERON:0002346!9.13e-10!71;UBERON:0003075!9.13e-10!71;UBERON:0007284!9.13e-10!71;UBERON:0007811!1.34e-08!86;UBERON:0004121!1.27e-07!102;UBERON:0000924!1.27e-07!102;UBERON:0006601!1.27e-07!102;UBERON:0000153!1.51e-07!94 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,4.70e-79,10;UBERON:0000411,4.70e-79,10;UBERON:0001950,4.70e-79,10;UBERON:0002619,2.27e-46,17;UBERON:0000956,1.84e-37,21;UBERON:0001869,1.84e-37,21;UBERON:0000203,1.84e-37,21;UBERON:0003528,5.34e-27,29;UBERON:0002791,5.34e-27,29;UBERON:0001893,5.34e-27,29;UBERON:0002020,5.96e-23,34;UBERON:0002780,6.16e-20,39;UBERON:0001890,6.16e-20,39;UBERON:0006240,6.16e-20,39;UBERON:0003080,2.01e-19,40;UBERON:0000073,2.98e-17,54;UBERON:0002616,8.22e-17,46;UBERON:0000955,1.93e-16,47;UBERON:0006238,1.93e-16,47;UBERON:0003056,9.62e-16,49;UBERON:0001049,8.49e-15,52;UBERON:0005068,8.49e-15,52;UBERON:0006241,8.49e-15,52;UBERON:0007135,8.49e-15,52;UBERON:0001017,1.39e-12,73;UBERON:0001016,3.15e-12,75;UBERON:0002346,6.80e-12,64;UBERON:0003075,6.80e-12,64;UBERON:0007284,6.80e-12,64;UBERON:0010371,2.45e-10,73;UBERON:0004121,1.73e-09,95;UBERON:0000924,1.73e-09,95;UBERON:0006601,1.73e-09,95;UBERON:0010314,4.89e-08,92 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10115880999389,0,0,0,0.182975287204819,0,0,0,0.15279824777681,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255715457330331,0,0.486723789203273,0,0,0,0,0,0,0,0,0.136072998302656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102904612379284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0.302323556964751,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18542530201051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117357238645754,0.13020438484395,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.12950368523413,1.38097570952153,1.14579102687879,5.84300819968538,1.37016503954128,1.5107877947794,2.02506750069542,2.2516060161211,1.81256963593682,1.03552062350364,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.115884325944855,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118635018124174,0,0.409231043169689,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:126885535..126885547,+ | |||
}} |
Revision as of 03:48, 14 September 2013
Short description: | p@chr4:126885535..126885547, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:126885535..126885547, + |
Coexpression cluster: | MCL_coexpression_mm9:135 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 4.70e-79 | 10 |
visual cortex | 4.70e-79 | 10 |
neocortex | 4.70e-79 | 10 |
regional part of cerebral cortex | 2.27e-46 | 17 |
cerebral cortex | 1.84e-37 | 21 |
cerebral hemisphere | 1.84e-37 | 21 |
pallium | 1.84e-37 | 21 |
brain grey matter | 5.34e-27 | 29 |
regional part of telencephalon | 5.34e-27 | 29 |
telencephalon | 5.34e-27 | 29 |
gray matter | 5.96e-23 | 34 |
regional part of forebrain | 6.16e-20 | 39 |
forebrain | 6.16e-20 | 39 |
future forebrain | 6.16e-20 | 39 |
anterior neural tube | 2.01e-19 | 40 |
regional part of nervous system | 2.98e-17 | 54 |
regional part of brain | 8.22e-17 | 46 |
brain | 1.93e-16 | 47 |
future brain | 1.93e-16 | 47 |
pre-chordal neural plate | 9.62e-16 | 49 |
neural tube | 8.49e-15 | 52 |
neural rod | 8.49e-15 | 52 |
future spinal cord | 8.49e-15 | 52 |
neural keel | 8.49e-15 | 52 |
central nervous system | 1.39e-12 | 73 |
nervous system | 3.15e-12 | 75 |
neurectoderm | 6.80e-12 | 64 |
neural plate | 6.80e-12 | 64 |
presumptive neural plate | 6.80e-12 | 64 |
ecto-epithelium | 2.45e-10 | 73 |
ectoderm-derived structure | 1.73e-09 | 95 |
ectoderm | 1.73e-09 | 95 |
presumptive ectoderm | 1.73e-09 | 95 |
structure with developmental contribution from neural crest | 4.89e-08 | 92 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.