FFCP PHASE1:Hg19::chr8:22550825..22550844,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1960|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3240|TSSclassifier=S|UniProt=Q06889|association_with_transcript=-10bp_to_ENST00000317216,NM_004430,uc003xcm.1_5end|coexpression_cluster_id=C17|description=CAGE_peak_7_at_EGR3_5end|id=chr8:22550825..22550844,-|ontology_enrichment_celltype=CL:0002057!3.21e-10!42;CL:0000860!3.37e-10!45;CL:0000557!2.11e-08!71;CL:0000839!1.13e-07!70;CL:0000766!1.97e-07!76|ontology_enrichment_celltype_v019=CL:0000214;1.17e-08;3|ontology_enrichment_celltype_v019_2=CL:0000214,1.12e-08,3|ontology_enrichment_development_v019=UBERON:0005425;2.93e-23;1!UBERON:0003056;1.17e-08;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3307;2.45e-12;2|ontology_enrichment_disease_v019_2=DOID:3307,1.85e-12,2|ontology_enrichment_uberon=UBERON:0002619!1.47e-13!22;UBERON:0001893!6.07e-13!34;UBERON:0001869!1.66e-12!32;UBERON:0002791!7.20e-12!33;UBERON:0000956!1.67e-11!25;UBERON:0000203!1.67e-11!25;UBERON:0002020!2.57e-11!34;UBERON:0003528!2.57e-11!34;UBERON:0001950!3.61e-11!20;UBERON:0002780!6.81e-10!41;UBERON:0001890!6.81e-10!41;UBERON:0006240!6.81e-10!41;UBERON:0003080!1.53e-09!42;UBERON:0000349!2.43e-09!5;UBERON:0002371!3.02e-08!80;UBERON:0001049!3.22e-08!57;UBERON:0005068!3.22e-08!57;UBERON:0006241!3.22e-08!57;UBERON:0007135!3.22e-08!57;UBERON:0002390!3.95e-08!102;UBERON:0003061!3.95e-08!102;UBERON:0001871!4.13e-08!7;UBERON:0001474!7.40e-08!86;UBERON:0007023!1.97e-07!115;UBERON:0003056!2.72e-07!61;UBERON:0000073!2.78e-07!94;UBERON:0001016!2.78e-07!94;UBERON:0002346!2.78e-07!90;UBERON:0001017!2.88e-07!82;UBERON:0002193!2.95e-07!112;UBERON:0005743!3.02e-07!86;UBERON:0000955!3.23e-07!69;UBERON:0006238!3.23e-07!69;UBERON:0004765!4.66e-07!101;UBERON:0001434!4.66e-07!101;UBERON:0000200!5.90e-07!6;UBERON:0002616!7.13e-07!59|ontology_enrichment_uberon_v019=UBERON:0000941;2.93e-23;1!UBERON:0001785;2.93e-23;1!UBERON:0002464;2.93e-23;1!UBERON:0004904;2.93e-23;1!UBERON:0001021;2.93e-23;1!UBERON:0000349;1.48e-18;5!UBERON:0001876;2.45e-12;2!UBERON:0001954;2.45e-12;2!UBERON:0003714;2.45e-12;2!UBERON:0005162;2.45e-12;2!UBERON:0000122;2.45e-12;2!UBERON:0003022;2.45e-12;2!UBERON:0002421;2.45e-12;2!UBERON:0002600;2.45e-12;2!UBERON:0006915;1.17e-08;3!UBERON:0007616;1.17e-08;3!UBERON:0002217;1.17e-08;3!UBERON:0002018;1.17e-08;3|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.28e-23,1;UBERON:0001785,3.28e-23,1;UBERON:0002464,3.28e-23,1;UBERON:0004904,3.28e-23,1;UBERON:0001021,3.28e-23,1;UBERON:0003902,3.28e-23,1;UBERON:0005425,3.28e-23,1;UBERON:0000349,9.47e-19,5;UBERON:0001876,1.65e-12,2;UBERON:0001954,2.07e-12,2;UBERON:0003022,2.07e-12,2;UBERON:0002421,2.07e-12,2;UBERON:0002600,2.07e-12,2;UBERON:0003714,2.59e-12,2;UBERON:0005162,2.59e-12,2;UBERON:0000122,2.59e-12,2;UBERON:0006915,1.12e-08,3;UBERON:0007616,1.12e-08,3;UBERON:0002217,1.12e-08,3;UBERON:0002018,1.12e-08,3;UBERON:0001781,8.61e-07,4|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229240217243854,0.164201178899891,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0.401088894940283,0.217010870715852,0,0,0,0,0,0.242584061187816,0.697287110717054,0,1.23882548358041,0.28769239232215,0.256160706529101,0,1.03423704220986,0.645484683583826,0,0.188242339542605,0.272906150057846,0,0.306083892370903,0,0.639337125799041,0,0,0,0.580418477257168,0,0,0.251248665256743,1.0429658368404,0.217188844705117,0,0,0.316462387440884,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292311015483596,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,77.8407915875591,0,0.621984346622316,0.288239906833923,0.25248486685276,0.063497894292169,0.381988425558278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.749007023947182,0,0,0,0,0,0,0,0,0.234282829985426,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0.355123450626254,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47775344708365,0.329294892959902,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0.185803175125719,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0.844501632511974,0.19924798825107,0.276283915531148,0,0.20453736500431,0,0,0,0,0,0,0,0,0.969332746095218,0.185536196323703,0,0,0,0,0,0,0,0,0,0.1736249949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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1960 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3240 | |||
|TSSclassifier=S | |||
|UniProt=Q06889 | |||
|association_with_transcript=-10bp_to_ENST00000317216,NM_004430,uc003xcm.1_5end | |||
|coexpression_cluster_id=C17 | |||
|description=CAGE_peak_7_at_EGR3_5end | |||
|id=chr8:22550825..22550844,- | |||
|ontology_enrichment_celltype=CL:0002057!3.21e-10!42;CL:0000860!3.37e-10!45;CL:0000557!2.11e-08!71;CL:0000839!1.13e-07!70;CL:0000766!1.97e-07!76 | |||
|ontology_enrichment_celltype_v019=CL:0000214;1.17e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000214,1.12e-08,3 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.93e-23;1!UBERON:0003056;1.17e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3307;2.45e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3307,1.85e-12,2 | |||
|ontology_enrichment_uberon=UBERON:0002619!1.47e-13!22;UBERON:0001893!6.07e-13!34;UBERON:0001869!1.66e-12!32;UBERON:0002791!7.20e-12!33;UBERON:0000956!1.67e-11!25;UBERON:0000203!1.67e-11!25;UBERON:0002020!2.57e-11!34;UBERON:0003528!2.57e-11!34;UBERON:0001950!3.61e-11!20;UBERON:0002780!6.81e-10!41;UBERON:0001890!6.81e-10!41;UBERON:0006240!6.81e-10!41;UBERON:0003080!1.53e-09!42;UBERON:0000349!2.43e-09!5;UBERON:0002371!3.02e-08!80;UBERON:0001049!3.22e-08!57;UBERON:0005068!3.22e-08!57;UBERON:0006241!3.22e-08!57;UBERON:0007135!3.22e-08!57;UBERON:0002390!3.95e-08!102;UBERON:0003061!3.95e-08!102;UBERON:0001871!4.13e-08!7;UBERON:0001474!7.40e-08!86;UBERON:0007023!1.97e-07!115;UBERON:0003056!2.72e-07!61;UBERON:0000073!2.78e-07!94;UBERON:0001016!2.78e-07!94;UBERON:0002346!2.78e-07!90;UBERON:0001017!2.88e-07!82;UBERON:0002193!2.95e-07!112;UBERON:0005743!3.02e-07!86;UBERON:0000955!3.23e-07!69;UBERON:0006238!3.23e-07!69;UBERON:0004765!4.66e-07!101;UBERON:0001434!4.66e-07!101;UBERON:0000200!5.90e-07!6;UBERON:0002616!7.13e-07!59 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;2.93e-23;1!UBERON:0001785;2.93e-23;1!UBERON:0002464;2.93e-23;1!UBERON:0004904;2.93e-23;1!UBERON:0001021;2.93e-23;1!UBERON:0000349;1.48e-18;5!UBERON:0001876;2.45e-12;2!UBERON:0001954;2.45e-12;2!UBERON:0003714;2.45e-12;2!UBERON:0005162;2.45e-12;2!UBERON:0000122;2.45e-12;2!UBERON:0003022;2.45e-12;2!UBERON:0002421;2.45e-12;2!UBERON:0002600;2.45e-12;2!UBERON:0006915;1.17e-08;3!UBERON:0007616;1.17e-08;3!UBERON:0002217;1.17e-08;3!UBERON:0002018;1.17e-08;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,3.28e-23,1;UBERON:0001785,3.28e-23,1;UBERON:0002464,3.28e-23,1;UBERON:0004904,3.28e-23,1;UBERON:0001021,3.28e-23,1;UBERON:0003902,3.28e-23,1;UBERON:0005425,3.28e-23,1;UBERON:0000349,9.47e-19,5;UBERON:0001876,1.65e-12,2;UBERON:0001954,2.07e-12,2;UBERON:0003022,2.07e-12,2;UBERON:0002421,2.07e-12,2;UBERON:0002600,2.07e-12,2;UBERON:0003714,2.59e-12,2;UBERON:0005162,2.59e-12,2;UBERON:0000122,2.59e-12,2;UBERON:0006915,1.12e-08,3;UBERON:0007616,1.12e-08,3;UBERON:0002217,1.12e-08,3;UBERON:0002018,1.12e-08,3;UBERON:0001781,8.61e-07,4 | |||
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|short_description=p7@EGR3 | |||
}} |
Revision as of 04:39, 14 September 2013
Short description: | p7@EGR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_EGR3_5end |
Coexpression cluster: | C17_Mast_CD14_Monocytederived_Lymphatic_Smooth_mesenchymal_Macrophage |
Association with transcript: | -10bp_to_ENST00000317216, NM_004430, uc003xcm.1_5end |
EntrezGene: | EGR3 |
HGNC: | 3240 |
UniProt: | Q06889 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
synovial cell | 1.12e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 3.28e-23 | 1 |
cranial nerve | 3.28e-23 | 1 |
nerve trunk | 3.28e-23 | 1 |
nerve connecting eye with brain | 3.28e-23 | 1 |
nerve | 3.28e-23 | 1 |
retinal neural layer | 3.28e-23 | 1 |
presumptive neural retina | 3.28e-23 | 1 |
limbic system | 9.47e-19 | 5 |
amygdala | 1.65e-12 | 2 |
Ammon's horn | 2.07e-12 | 2 |
lobe parts of cerebral cortex | 2.07e-12 | 2 |
hippocampal formation | 2.07e-12 | 2 |
limbic lobe | 2.07e-12 | 2 |
neural tissue | 2.59e-12 | 2 |
multi cell component structure | 2.59e-12 | 2 |
neuron projection bundle | 2.59e-12 | 2 |
stratified squamous epithelium | 1.12e-08 | 3 |
layer of synovial tissue | 1.12e-08 | 3 |
synovial joint | 1.12e-08 | 3 |
synovial membrane of synovial joint | 1.12e-08 | 3 |
layer of retina | 8.61e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
teratoma | 1.85e-12 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.