FFCP PHASE1:Hg19::chr9:85677729..85677744,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=158158|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=26464|TSSclassifier=S|UniProt=A8K4M1|association_with_transcript=40bp_to_AK290986_5end|description=CAGE_peak_3_at_RASEF_5end|id=chr9:85677729..85677744,-|ontology_enrichment_celltype=CL:0000066!7.01e-16!254;CL:0002076!4.69e-07!43|ontology_enrichment_celltype_v019=CL:0000082;7.68e-09;19|ontology_enrichment_celltype_v019_2=CL:0000066,3.47e-11,253;CL:0000082,5.75e-09,19|ontology_enrichment_development_v019=UBERON:0001041;1.30e-09;30!UBERON:0006595;7.73e-09;86!UBERON:0008947;3.05e-08;29|ontology_enrichment_disease=DOID:305!8.66e-29!106;DOID:0050687!7.23e-24!143;DOID:14566!7.32e-14!239;DOID:162!6.03e-13!235;DOID:1749!1.25e-12!14;DOID:299!2.52e-09!25;DOID:0050615!3.44e-07!16|ontology_enrichment_disease_v019=DOID:1749;3.70e-19;14!DOID:0050615;8.56e-14;16!DOID:5093;3.25e-13;4!DOID:1612;3.25e-13;4!DOID:299;4.40e-12;25!DOID:1324;1.36e-11;15!DOID:305;2.24e-10;106!DOID:1325;5.47e-07;7!DOID:3904;5.47e-07;7!DOID:7;6.17e-07;39!DOID:3493;8.55e-07;2|ontology_enrichment_disease_v019_2=DOID:305,5.87e-32,106;DOID:0050687,3.34e-25,143;DOID:1749,2.90e-19,14;DOID:14566,5.32e-14,239;DOID:0050615,5.72e-14,16;DOID:162,1.12e-13,235;DOID:5093,3.71e-13,4;DOID:1612,3.71e-13,4;DOID:299,4.16e-12,25;DOID:1324,9.28e-12,15;DOID:7,2.12e-08,39;DOID:1325,4.37e-07,7;DOID:3904,4.37e-07,7;DOID:3493,5.96e-07,2|ontology_enrichment_uberon=UBERON:0004119!1.94e-11!169;UBERON:0000925!1.94e-11!169;UBERON:0006595!1.94e-11!169;UBERON:0001007!9.13e-11!155;UBERON:0001555!9.13e-11!155;UBERON:0007026!9.13e-11!155;UBERON:0000464!9.34e-11!104;UBERON:0001004!1.68e-10!72;UBERON:0000466!7.28e-10!126;UBERON:0000077!3.56e-09!130;UBERON:0004921!5.49e-09!129;UBERON:0004185!5.49e-09!129;UBERON:0001041!3.76e-08!98;UBERON:0000065!9.22e-08!53;UBERON:0002294!1.13e-07!7;UBERON:0001173!1.13e-07!7;UBERON:0004912!1.13e-07!7;UBERON:0000161!4.50e-07!35;UBERON:0005178!5.47e-07!34;UBERON:0002224!5.47e-07!34|ontology_enrichment_uberon_v019=UBERON:0002294;4.85e-14;7!UBERON:0001173;4.85e-14;7!UBERON:0002110;5.52e-09;3!UBERON:0004802;7.68e-09;19!UBERON:0000115;7.68e-09;19!UBERON:0000974;5.90e-08;6!UBERON:0002048;1.94e-07;22!UBERON:0004807;1.94e-07;22!UBERON:0000117;1.94e-07;22!UBERON:0000171;1.94e-07;22!UBERON:0000170;1.94e-07;22!UBERON:0003343;2.68e-07;4!UBERON:0004785;2.68e-07;4!UBERON:0000058;4.75e-07;10!UBERON:0002394;5.33e-07;4!UBERON:0003928;5.33e-07;4!UBERON:0005181;9.51e-07;35|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.20e-12,145;UBERON:0001555,1.20e-12,145;UBERON:0007026,1.20e-12,145;UBERON:0004119,1.44e-12,160;UBERON:0000925,1.44e-12,160;UBERON:0006595,1.44e-12,160;UBERON:0002294,8.22e-11,9;UBERON:0001173,8.22e-11,9;UBERON:0004912,8.22e-11,9;UBERON:0004921,1.19e-09,118;UBERON:0001004,1.74e-09,74;UBERON:0001041,2.11e-09,87;UBERON:0000915,2.15e-09,52;UBERON:0004802,5.75e-09,19;UBERON:0000115,5.75e-09,19;UBERON:0002110,8.79e-09,3;UBERON:0006242,8.79e-09,3;UBERON:0005178,3.19e-08,34;UBERON:0002224,3.19e-08,34;UBERON:0005181,6.40e-08,35;UBERON:0005911,7.72e-08,82;UBERON:0002048,1.52e-07,22;UBERON:0000117,1.52e-07,22;UBERON:0000171,1.52e-07,22;UBERON:0000170,1.52e-07,22;UBERON:0005597,1.52e-07,22;UBERON:0000118,1.52e-07,22;UBERON:0003343,2.34e-07,4;UBERON:0004785,2.34e-07,4;UBERON:0008947,4.10e-07,38;UBERON:0003258,4.10e-07,38;UBERON:0003127,8.22e-07,2|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.283604451492204,0.443458794925128,0.614843499851882,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0.12663051166458,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168336113954066,0,0,0,0,0,0,0,0,0,0,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0.116193942869518,0.621966330092223,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0.219500570817251,0,0,0,0,0,0,0.231860809950154,0.117408694235822,0,0,0,3.1608175918371,3.43394464837949,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0.766765358330422,0,0,0.207328115540772,0,0,0.126995788584338,0,0,0,0,0,0.571652865261156,0,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52456774533478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552485933615378,0,0,0,0,0,0,0,0.422206515571503,0,0,0,0,0.541892875087706,0,0.254876273045038,0.831076008928724,0.223874754722178,0,0,0,0,0.325378394664303,1.64865618636356,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0.165284915360978,0.768760269460425,0.127612712494584,1.51736671283325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=158158 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26464 | |||
|TSSclassifier=S | |||
|UniProt=A8K4M1 | |||
|association_with_transcript=40bp_to_AK290986_5end | |||
|description=CAGE_peak_3_at_RASEF_5end | |||
|id=chr9:85677729..85677744,- | |||
|ontology_enrichment_celltype=CL:0000066!7.01e-16!254;CL:0002076!4.69e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0000082;7.68e-09;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.47e-11,253;CL:0000082,5.75e-09,19 | |||
|ontology_enrichment_development_v019=UBERON:0001041;1.30e-09;30!UBERON:0006595;7.73e-09;86!UBERON:0008947;3.05e-08;29 | |||
|ontology_enrichment_disease=DOID:305!8.66e-29!106;DOID:0050687!7.23e-24!143;DOID:14566!7.32e-14!239;DOID:162!6.03e-13!235;DOID:1749!1.25e-12!14;DOID:299!2.52e-09!25;DOID:0050615!3.44e-07!16 | |||
|ontology_enrichment_disease_v019=DOID:1749;3.70e-19;14!DOID:0050615;8.56e-14;16!DOID:5093;3.25e-13;4!DOID:1612;3.25e-13;4!DOID:299;4.40e-12;25!DOID:1324;1.36e-11;15!DOID:305;2.24e-10;106!DOID:1325;5.47e-07;7!DOID:3904;5.47e-07;7!DOID:7;6.17e-07;39!DOID:3493;8.55e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.87e-32,106;DOID:0050687,3.34e-25,143;DOID:1749,2.90e-19,14;DOID:14566,5.32e-14,239;DOID:0050615,5.72e-14,16;DOID:162,1.12e-13,235;DOID:5093,3.71e-13,4;DOID:1612,3.71e-13,4;DOID:299,4.16e-12,25;DOID:1324,9.28e-12,15;DOID:7,2.12e-08,39;DOID:1325,4.37e-07,7;DOID:3904,4.37e-07,7;DOID:3493,5.96e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.94e-11!169;UBERON:0000925!1.94e-11!169;UBERON:0006595!1.94e-11!169;UBERON:0001007!9.13e-11!155;UBERON:0001555!9.13e-11!155;UBERON:0007026!9.13e-11!155;UBERON:0000464!9.34e-11!104;UBERON:0001004!1.68e-10!72;UBERON:0000466!7.28e-10!126;UBERON:0000077!3.56e-09!130;UBERON:0004921!5.49e-09!129;UBERON:0004185!5.49e-09!129;UBERON:0001041!3.76e-08!98;UBERON:0000065!9.22e-08!53;UBERON:0002294!1.13e-07!7;UBERON:0001173!1.13e-07!7;UBERON:0004912!1.13e-07!7;UBERON:0000161!4.50e-07!35;UBERON:0005178!5.47e-07!34;UBERON:0002224!5.47e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002294;4.85e-14;7!UBERON:0001173;4.85e-14;7!UBERON:0002110;5.52e-09;3!UBERON:0004802;7.68e-09;19!UBERON:0000115;7.68e-09;19!UBERON:0000974;5.90e-08;6!UBERON:0002048;1.94e-07;22!UBERON:0004807;1.94e-07;22!UBERON:0000117;1.94e-07;22!UBERON:0000171;1.94e-07;22!UBERON:0000170;1.94e-07;22!UBERON:0003343;2.68e-07;4!UBERON:0004785;2.68e-07;4!UBERON:0000058;4.75e-07;10!UBERON:0002394;5.33e-07;4!UBERON:0003928;5.33e-07;4!UBERON:0005181;9.51e-07;35 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001007,1.20e-12,145;UBERON:0001555,1.20e-12,145;UBERON:0007026,1.20e-12,145;UBERON:0004119,1.44e-12,160;UBERON:0000925,1.44e-12,160;UBERON:0006595,1.44e-12,160;UBERON:0002294,8.22e-11,9;UBERON:0001173,8.22e-11,9;UBERON:0004912,8.22e-11,9;UBERON:0004921,1.19e-09,118;UBERON:0001004,1.74e-09,74;UBERON:0001041,2.11e-09,87;UBERON:0000915,2.15e-09,52;UBERON:0004802,5.75e-09,19;UBERON:0000115,5.75e-09,19;UBERON:0002110,8.79e-09,3;UBERON:0006242,8.79e-09,3;UBERON:0005178,3.19e-08,34;UBERON:0002224,3.19e-08,34;UBERON:0005181,6.40e-08,35;UBERON:0005911,7.72e-08,82;UBERON:0002048,1.52e-07,22;UBERON:0000117,1.52e-07,22;UBERON:0000171,1.52e-07,22;UBERON:0000170,1.52e-07,22;UBERON:0005597,1.52e-07,22;UBERON:0000118,1.52e-07,22;UBERON:0003343,2.34e-07,4;UBERON:0004785,2.34e-07,4;UBERON:0008947,4.10e-07,38;UBERON:0003258,4.10e-07,38;UBERON:0003127,8.22e-07,2 | |||
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| |||
|short_description=p3@RASEF | |||
}} |
Revision as of 09:31, 14 September 2013
Short description: | p3@RASEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_RASEF_5end |
Coexpression cluster: | NA |
Association with transcript: | 40bp_to_AK290986_5end |
EntrezGene: | RASEF |
HGNC: | 26464 |
UniProt: | A8K4M1 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.47e-11 | 253 |
epithelial cell of lung | 5.75e-09 | 19 |
Ontology term | p-value | n |
---|---|---|
digestive system | 1.20e-12 | 145 |
digestive tract | 1.20e-12 | 145 |
primitive gut | 1.20e-12 | 145 |
endoderm-derived structure | 1.44e-12 | 160 |
endoderm | 1.44e-12 | 160 |
presumptive endoderm | 1.44e-12 | 160 |
biliary system | 8.22e-11 | 9 |
biliary tree | 8.22e-11 | 9 |
biliary bud | 8.22e-11 | 9 |
subdivision of digestive tract | 1.19e-09 | 118 |
respiratory system | 1.74e-09 | 74 |
foregut | 2.11e-09 | 87 |
thoracic segment of trunk | 2.15e-09 | 52 |
respiratory tract epithelium | 5.75e-09 | 19 |
lung epithelium | 5.75e-09 | 19 |
gallbladder | 8.79e-09 | 3 |
gall bladder primordium | 8.79e-09 | 3 |
thoracic cavity element | 3.19e-08 | 34 |
thoracic cavity | 3.19e-08 | 34 |
thoracic segment organ | 6.40e-08 | 35 |
endo-epithelium | 7.72e-08 | 82 |
lung | 1.52e-07 | 22 |
respiratory tube | 1.52e-07 | 22 |
respiration organ | 1.52e-07 | 22 |
pair of lungs | 1.52e-07 | 22 |
lung primordium | 1.52e-07 | 22 |
lung bud | 1.52e-07 | 22 |
mucosa of oral region | 2.34e-07 | 4 |
respiratory system mucosa | 2.34e-07 | 4 |
respiratory primordium | 4.10e-07 | 38 |
endoderm of foregut | 4.10e-07 | 38 |
open tracheal system trachea | 8.22e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.87e-32 | 106 |
cell type cancer | 3.34e-25 | 143 |
squamous cell carcinoma | 2.90e-19 | 14 |
disease of cellular proliferation | 5.32e-14 | 239 |
respiratory system cancer | 5.72e-14 | 16 |
cancer | 1.12e-13 | 235 |
thoracic cancer | 3.71e-13 | 4 |
breast cancer | 3.71e-13 | 4 |
adenocarcinoma | 4.16e-12 | 25 |
lung cancer | 9.28e-12 | 15 |
disease of anatomical entity | 2.12e-08 | 39 |
bronchus cancer | 4.37e-07 | 7 |
bronchogenic carcinoma | 4.37e-07 | 7 |
signet ring cell adenocarcinoma | 5.96e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.