FFCP PHASE1:Mm9::chr6:42660000..42660014,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=77574|HGNC=|MCL_coexpression_id=1|UniProt=Q8BNE1|association_with_transcript=51bp_to_ENSMUST00000045054_5end|description=CAGE_peak_3_at_Fam115a_5end|id=chr6:42660000..42660014,-|ontology_enrichment_celltype=CL:0000540!3.64e-14!33;CL:0000047!3.64e-14!33;CL:0000031!3.64e-14!33;CL:0000404!3.64e-14!33;CL:0000393!2.09e-12!39;CL:0000211!2.09e-12!39;CL:0000117!1.05e-10!23;CL:0000337!1.05e-10!23;CL:0002319!6.70e-09!43;CL:0000221!1.07e-08!44;CL:0000133!1.07e-08!44;CL:0000055!1.54e-07!50|ontology_enrichment_celltype_v019_2=CL:0000540,5.15e-16,33;CL:0000047,5.15e-16,33;CL:0000031,5.15e-16,33;CL:0000404,5.15e-16,33;CL:0000393,7.16e-13,39;CL:0000211,7.16e-13,39;CL:0000117,4.78e-12,23;CL:0000337,4.78e-12,23;CL:0002319,2.00e-09,43;CL:0000221,6.59e-09,44;CL:0000133,6.59e-09,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!9.73e-28!71;UBERON:0003075!9.73e-28!71;UBERON:0007284!9.73e-28!71;UBERON:0001017!9.41e-26!73;UBERON:0005743!9.41e-26!73;UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0000073!1.24e-24!75;UBERON:0001016!1.24e-24!75;UBERON:0000033!6.38e-21!63;UBERON:0001049!2.72e-20!52;UBERON:0005068!2.72e-20!52;UBERON:0006241!2.72e-20!52;UBERON:0007135!2.72e-20!52;UBERON:0000955!6.54e-20!50;UBERON:0006238!6.54e-20!50;UBERON:0002616!3.42e-19!49;UBERON:0003056!4.53e-19!49;UBERON:0003080!1.11e-16!40;UBERON:0002020!2.87e-16!34;UBERON:0002780!5.06e-16!39;UBERON:0001890!5.06e-16!39;UBERON:0006240!5.06e-16!39;UBERON:0002791!3.76e-14!29;UBERON:0003528!3.76e-14!29;UBERON:0001893!3.76e-14!29;UBERON:0000956!6.91e-10!21;UBERON:0001869!6.91e-10!21;UBERON:0000203!6.91e-10!21;UBERON:0000468!4.35e-09!333;UBERON:0000153!8.81e-09!94;UBERON:0002619!1.80e-08!17;UBERON:0007811!2.07e-08!86;UBERON:0002021!8.87e-08!10;UBERON:0000411!8.87e-08!10;UBERON:0001950!8.87e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-28,73;UBERON:0002346,7.12e-28,64;UBERON:0003075,7.12e-28,64;UBERON:0007284,7.12e-28,64;UBERON:0001016,4.42e-27,75;UBERON:0000073,3.13e-24,54;UBERON:0004121,6.24e-23,95;UBERON:0000924,6.24e-23,95;UBERON:0006601,6.24e-23,95;UBERON:0001049,7.55e-23,52;UBERON:0005068,7.55e-23,52;UBERON:0006241,7.55e-23,52;UBERON:0007135,7.55e-23,52;UBERON:0010371,4.48e-22,73;UBERON:0010314,1.09e-21,92;UBERON:0003056,2.16e-21,49;UBERON:0000955,2.51e-20,47;UBERON:0006238,2.51e-20,47;UBERON:0002616,1.59e-19,46;UBERON:0003080,1.19e-18,40;UBERON:0002020,2.39e-18,34;UBERON:0002780,6.80e-18,39;UBERON:0001890,6.80e-18,39;UBERON:0006240,6.80e-18,39;UBERON:0003528,6.41e-16,29;UBERON:0002791,6.41e-16,29;UBERON:0001893,6.41e-16,29;UBERON:0000956,4.92e-11,21;UBERON:0001869,4.92e-11,21;UBERON:0000203,4.92e-11,21;UBERON:0002619,2.06e-09,17;UBERON:0002021,1.08e-08,10;UBERON:0000411,1.08e-08,10;UBERON:0001950,1.08e-08,10|phase1_expression=3.52327463630547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,1.78590909317247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51793635951155,0.811015449756117,0.917733760808408,0,0.436050312760893,0.219686182734472,1.1665793944457,0.55994568650145,0,0,0,0,1.28629718017973,0.85960031981627,0,4.04632921719196,4.7609188134483,2.53532561402472,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,2.7996195323289,2.70011876663381,2.3135745748652,1.99955689082663,2.87129103237098,3.79721477566358,3.73797336971122,1.83843757322004,5.50579404996943,7.40586560894089,8.1411462625809,5.14356522147756,5.39777097254217,4.68822033501084,3.90856198601933,7.31591393041184,6.87592114995646,6.18720029494702,6.12198227436143,4.84638559145781,0.075726193333184,0.604572480854284,1.15945795480671,0,0,0,0,0,0.702222100658759,0.511290967734173,0.259786004602869,0.70667914902068,0.704217098883403,1.28326477414318,0,0,0,0,0,0.22836775943812,0,2.82040064223167,3.12273588179045,3.95805121805784,2.99800146432876,3.91878865436819,3.05730638552832,2.01066546127481,0,0.578397427679647,0,1.29413479957927,0.662524555381181,1.45462575940567,0,5.27005434620785,5.02672096352292,0.255457055208591,0,0,0,10.7849260371472,16.9275223042892,4.90051973240171,15.1227158567281,16.8772201838018,9.97382613885888,14.7639549391659,1.2220723662038,0.995255764880744,0,1.26265113531884,2.86264974517948,1.14951052216736,3.06105620669094,5.27466862425003,2.85753296435577,3.33095672740609,2.43624483855295,2.58703370739016,1.5089759505299,1.70195472151037,3.69497360744293,1.97276159184817,1.11218899690239,1.0447564995665,1.64625709126355,2.58744546864041,0,0,0,1.44988040774851,1.87620847984877,1.44049649168812,0.946978942340841,0.590292695242212,1.07986979021165,0.697601834251224,0.268273401399619,0.467061369468678,0.329119699826961,0.985004784474571,0.486412857275134,1.02339991197733,0.658650345873152,0.536825675041487,13.0379768109759,5.24813523134351,0,0,2.77274725695804,3.0190767341857,1.80414445850931,1.81515172161008,0.667134131534611,1.14135375667535,0,0.494096864172033,0.754005626400808,0.795825888164603,0.58489226135736,0,1.08069024937347,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| ||
|EntrezGene=77574 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q8BNE1 | |||
|association_with_transcript=51bp_to_ENSMUST00000045054_5end | |||
|description=CAGE_peak_3_at_Fam115a_5end | |||
|id=chr6:42660000..42660014,- | |||
|ontology_enrichment_celltype=CL:0000540!3.64e-14!33;CL:0000047!3.64e-14!33;CL:0000031!3.64e-14!33;CL:0000404!3.64e-14!33;CL:0000393!2.09e-12!39;CL:0000211!2.09e-12!39;CL:0000117!1.05e-10!23;CL:0000337!1.05e-10!23;CL:0002319!6.70e-09!43;CL:0000221!1.07e-08!44;CL:0000133!1.07e-08!44;CL:0000055!1.54e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.15e-16,33;CL:0000047,5.15e-16,33;CL:0000031,5.15e-16,33;CL:0000404,5.15e-16,33;CL:0000393,7.16e-13,39;CL:0000211,7.16e-13,39;CL:0000117,4.78e-12,23;CL:0000337,4.78e-12,23;CL:0002319,2.00e-09,43;CL:0000221,6.59e-09,44;CL:0000133,6.59e-09,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!9.73e-28!71;UBERON:0003075!9.73e-28!71;UBERON:0007284!9.73e-28!71;UBERON:0001017!9.41e-26!73;UBERON:0005743!9.41e-26!73;UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0000073!1.24e-24!75;UBERON:0001016!1.24e-24!75;UBERON:0000033!6.38e-21!63;UBERON:0001049!2.72e-20!52;UBERON:0005068!2.72e-20!52;UBERON:0006241!2.72e-20!52;UBERON:0007135!2.72e-20!52;UBERON:0000955!6.54e-20!50;UBERON:0006238!6.54e-20!50;UBERON:0002616!3.42e-19!49;UBERON:0003056!4.53e-19!49;UBERON:0003080!1.11e-16!40;UBERON:0002020!2.87e-16!34;UBERON:0002780!5.06e-16!39;UBERON:0001890!5.06e-16!39;UBERON:0006240!5.06e-16!39;UBERON:0002791!3.76e-14!29;UBERON:0003528!3.76e-14!29;UBERON:0001893!3.76e-14!29;UBERON:0000956!6.91e-10!21;UBERON:0001869!6.91e-10!21;UBERON:0000203!6.91e-10!21;UBERON:0000468!4.35e-09!333;UBERON:0000153!8.81e-09!94;UBERON:0002619!1.80e-08!17;UBERON:0007811!2.07e-08!86;UBERON:0002021!8.87e-08!10;UBERON:0000411!8.87e-08!10;UBERON:0001950!8.87e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-28,73;UBERON:0002346,7.12e-28,64;UBERON:0003075,7.12e-28,64;UBERON:0007284,7.12e-28,64;UBERON:0001016,4.42e-27,75;UBERON:0000073,3.13e-24,54;UBERON:0004121,6.24e-23,95;UBERON:0000924,6.24e-23,95;UBERON:0006601,6.24e-23,95;UBERON:0001049,7.55e-23,52;UBERON:0005068,7.55e-23,52;UBERON:0006241,7.55e-23,52;UBERON:0007135,7.55e-23,52;UBERON:0010371,4.48e-22,73;UBERON:0010314,1.09e-21,92;UBERON:0003056,2.16e-21,49;UBERON:0000955,2.51e-20,47;UBERON:0006238,2.51e-20,47;UBERON:0002616,1.59e-19,46;UBERON:0003080,1.19e-18,40;UBERON:0002020,2.39e-18,34;UBERON:0002780,6.80e-18,39;UBERON:0001890,6.80e-18,39;UBERON:0006240,6.80e-18,39;UBERON:0003528,6.41e-16,29;UBERON:0002791,6.41e-16,29;UBERON:0001893,6.41e-16,29;UBERON:0000956,4.92e-11,21;UBERON:0001869,4.92e-11,21;UBERON:0000203,4.92e-11,21;UBERON:0002619,2.06e-09,17;UBERON:0002021,1.08e-08,10;UBERON:0000411,1.08e-08,10;UBERON:0001950,1.08e-08,10 | |||
|phase1_expression=3.52327463630547,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202475267389826,0,0,0,0,1.78590909317247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.51793635951155,0.811015449756117,0.917733760808408,0,0.436050312760893,0.219686182734472,1.1665793944457,0.55994568650145,0,0,0,0,1.28629718017973,0.85960031981627,0,4.04632921719196,4.7609188134483,2.53532561402472,0.677689064138264,0,0,0,0,0.299600110518405,0.384218305321555,2.7996195323289,2.70011876663381,2.3135745748652,1.99955689082663,2.87129103237098,3.79721477566358,3.73797336971122,1.83843757322004,5.50579404996943,7.40586560894089,8.1411462625809,5.14356522147756,5.39777097254217,4.68822033501084,3.90856198601933,7.31591393041184,6.87592114995646,6.18720029494702,6.12198227436143,4.84638559145781,0.075726193333184,0.604572480854284,1.15945795480671,0,0,0,0,0,0.702222100658759,0.511290967734173,0.259786004602869,0.70667914902068,0.704217098883403,1.28326477414318,0,0,0,0,0,0.22836775943812,0,2.82040064223167,3.12273588179045,3.95805121805784,2.99800146432876,3.91878865436819,3.05730638552832,2.01066546127481,0,0.578397427679647,0,1.29413479957927,0.662524555381181,1.45462575940567,0,5.27005434620785,5.02672096352292,0.255457055208591,0,0,0,10.7849260371472,16.9275223042892,4.90051973240171,15.1227158567281,16.8772201838018,9.97382613885888,14.7639549391659,1.2220723662038,0.995255764880744,0,1.26265113531884,2.86264974517948,1.14951052216736,3.06105620669094,5.27466862425003,2.85753296435577,3.33095672740609,2.43624483855295,2.58703370739016,1.5089759505299,1.70195472151037,3.69497360744293,1.97276159184817,1.11218899690239,1.0447564995665,1.64625709126355,2.58744546864041,0,0,0,1.44988040774851,1.87620847984877,1.44049649168812,0.946978942340841,0.590292695242212,1.07986979021165,0.697601834251224,0.268273401399619,0.467061369468678,0.329119699826961,0.985004784474571,0.486412857275134,1.02339991197733,0.658650345873152,0.536825675041487,13.0379768109759,5.24813523134351,0,0,2.77274725695804,3.0190767341857,1.80414445850931,1.81515172161008,0.667134131534611,1.14135375667535,0,0.494096864172033,0.754005626400808,0.795825888164603,0.58489226135736,0,1.08069024937347,0.597423819763102,1.13800740571849,2.39921876480431,1.1270773567308,1.4255592949172,0.969762435838129,1.1221731182451,0.69560190836683,0.738050739898011,0.156998727841375,0.493588655687202,0.296452627087149,0,0.393117990226406,0.224862112384854,0,0.482354319504834,0.25462585178142,0.575392274901621,0.162135226775035,0,0,0,0,0.252578877947112,0,1.4473305640901,0.369506380333209,2.4633883530163,2.44447464663039,1.69745085775188,2.11221223459652,1.34005005953453,1.6663054862021,0.975668239288994,0.788175720530955,0.664394068946325,0.956728611944923,0.81931657357869,0.690739927463582,0.433947175744535,0,0,0,0.551873492609465,10.2752377592187,10.1974167335217,2.29508923527346,0.252470927204373,5.36363973007636,4.68526493155966,6.89354872744957,2.62865677747807,2.22798674082394,1.69845918473299,2.83367491172426,2.33804686329049,5.13874111330481,15.1021018718249,8.23252494207958,0.890328018336276,1.62886959353576,1.15479086080775,1.32745138339963,1.45668381692989,0.604647113929502,0.377210159511796,0.885905678642318,0.922305443831782,0.516856586336442,0.363533729477506,1.42598951353889,0.316036757935816,0,2.06271086496374,5.10659408630682,1.8006109403131,2.32845630808958,1.07168517515796,2.6601035046341,2.31879462882692,2.63278432963394,0.304464949114599,0.704015124191131,0.42366414172764,0.661585194164886,0.8244312647074,0.645857706783622,0.965006798850494,0.835606408021955,0.492422699235184,0.291480836629851,9.6421157045465,0,1.23832120777933,0.370389054739423,0.188368457004691,0.27338845544205,0,0,0,0,0,2.53068794864908,0.406638934253697,1.94409613479242,1.67270636811575,1.09181281873089,1.34864346384821,0.743881101528023,0.26175594198403,0.90730481304255,0,0,4.78452947340732,1.82004339502807,2.72231663681667,1.42075805825504,1.85851738039856,1.05621514781179,1.3020438484395,1.46803082195995,0.724752362478018,0.288030006257865,0,1.41907650703115,0.513554785824136,0.129920822977795,0.179026695667481,0.198681354781265,0,0,0,0,0,0.194915761479505,0,0.116876902181569,0.226730383615211,0.221985953374065,0.0897138566094757,0,1.9318959403219,1.68914227906064,1.28206136987086,0.428736758158132,0.501572104035363,12.4245405375755,14.7304075682297,9.16632821503035,10.6548973053086,10.2762377965596,9.82012066606611,6.07520250208625,10.8077088773813,15.406841905463,12.9440077937955,3.32119512269365,0.798049746802062,4.26834014385335,1.70174701947806,2.51535795153579,1.10306105070008,1.55572709461131,3.29656091582231,0.962757628775446,1.51618327058278,2.02783439912192,0.754505365544305,2.71560371662659,1.92075457214608,1.66562859971278,0,1.73826488917283,2.50781986602817,1.23625770240992,2.20798380201596,2.74295401908332,2.66213709239006,2.38436189947321,2.61623549938191,1.59985946706062,2.11536519729191,2.0122077016005,1.57841826862706,1.62964936615034,2.80571135828869,1.77952527186261,1.97008964751127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| |||
|short_description=p3@Fam115a | |||
}} |
Revision as of 10:01, 14 September 2013
Short description: | p3@Fam115a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Fam115a_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 51bp_to_ENSMUST00000045054_5end |
EntrezGene: | Fam115a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.15e-16 | 33 |
neuronal stem cell | 5.15e-16 | 33 |
neuroblast | 5.15e-16 | 33 |
electrically signaling cell | 5.15e-16 | 33 |
electrically responsive cell | 7.16e-13 | 39 |
electrically active cell | 7.16e-13 | 39 |
CNS neuron (sensu Vertebrata) | 4.78e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.78e-12 | 23 |
neural cell | 2.00e-09 | 43 |
ectodermal cell | 6.59e-09 | 44 |
neurectodermal cell | 6.59e-09 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.04e-28 | 73 |
neurectoderm | 7.12e-28 | 64 |
neural plate | 7.12e-28 | 64 |
presumptive neural plate | 7.12e-28 | 64 |
nervous system | 4.42e-27 | 75 |
regional part of nervous system | 3.13e-24 | 54 |
ectoderm-derived structure | 6.24e-23 | 95 |
ectoderm | 6.24e-23 | 95 |
presumptive ectoderm | 6.24e-23 | 95 |
neural tube | 7.55e-23 | 52 |
neural rod | 7.55e-23 | 52 |
future spinal cord | 7.55e-23 | 52 |
neural keel | 7.55e-23 | 52 |
ecto-epithelium | 4.48e-22 | 73 |
structure with developmental contribution from neural crest | 1.09e-21 | 92 |
pre-chordal neural plate | 2.16e-21 | 49 |
brain | 2.51e-20 | 47 |
future brain | 2.51e-20 | 47 |
regional part of brain | 1.59e-19 | 46 |
anterior neural tube | 1.19e-18 | 40 |
gray matter | 2.39e-18 | 34 |
regional part of forebrain | 6.80e-18 | 39 |
forebrain | 6.80e-18 | 39 |
future forebrain | 6.80e-18 | 39 |
brain grey matter | 6.41e-16 | 29 |
regional part of telencephalon | 6.41e-16 | 29 |
telencephalon | 6.41e-16 | 29 |
cerebral cortex | 4.92e-11 | 21 |
cerebral hemisphere | 4.92e-11 | 21 |
pallium | 4.92e-11 | 21 |
regional part of cerebral cortex | 2.06e-09 | 17 |
occipital lobe | 1.08e-08 | 10 |
visual cortex | 1.08e-08 | 10 |
neocortex | 1.08e-08 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.