FFCP PHASE1:Mm9::chr7:25184625..25184692,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=71997|HGNC=|MCL_coexpression_id=1011|UniProt=Q9DB90|association_with_transcript=0bp_to_ENSMUST00000002280,ENSMUST00000146381,NM_028047,uc009fpm.1,uc009fpn.1_5end|description=CAGE_peak_1_at_1500002O20Rik_5end|id=chr7:25184625..25184692,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!7.62e-15!71;UBERON:0003075!7.62e-15!71;UBERON:0007284!7.62e-15!71;UBERON:0001049!1.95e-14!52;UBERON:0005068!1.95e-14!52;UBERON:0006241!1.95e-14!52;UBERON:0007135!1.95e-14!52;UBERON:0000033!1.27e-13!63;UBERON:0000153!3.64e-13!94;UBERON:0007811!4.39e-13!86;UBERON:0000955!1.30e-12!50;UBERON:0006238!1.30e-12!50;UBERON:0003056!3.52e-12!49;UBERON:0000073!3.88e-12!75;UBERON:0001016!3.88e-12!75;UBERON:0002616!5.29e-12!49;UBERON:0001017!7.51e-12!73;UBERON:0005743!7.51e-12!73;UBERON:0004121!3.11e-11!102;UBERON:0000924!3.11e-11!102;UBERON:0006601!3.11e-11!102;UBERON:0003080!8.44e-10!40;UBERON:0002780!2.64e-09!39;UBERON:0001890!2.64e-09!39;UBERON:0006240!2.64e-09!39;UBERON:0002020!5.43e-09!34;UBERON:0000475!9.22e-08!200;UBERON:0002021!1.40e-07!10;UBERON:0000411!1.40e-07!10;UBERON:0001950!1.40e-07!10;UBERON:0002791!1.72e-07!29;UBERON:0003528!1.72e-07!29;UBERON:0001893!1.72e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.67e-15,64;UBERON:0003075,3.67e-15,64;UBERON:0007284,3.67e-15,64;UBERON:0001049,1.95e-14,52;UBERON:0005068,1.95e-14,52;UBERON:0006241,1.95e-14,52;UBERON:0007135,1.95e-14,52;UBERON:0000073,1.23e-13,54;UBERON:0000955,7.56e-13,47;UBERON:0006238,7.56e-13,47;UBERON:0002616,3.15e-12,46;UBERON:0003056,3.52e-12,49;UBERON:0001016,3.88e-12,75;UBERON:0001017,7.51e-12,73;UBERON:0004121,4.11e-11,95;UBERON:0000924,4.11e-11,95;UBERON:0006601,4.11e-11,95;UBERON:0010371,6.63e-11,73;UBERON:0003080,8.44e-10,40;UBERON:0002780,2.64e-09,39;UBERON:0001890,2.64e-09,39;UBERON:0006240,2.64e-09,39;UBERON:0002020,5.43e-09,34;UBERON:0010314,1.22e-08,92;UBERON:0002021,1.40e-07,10;UBERON:0000411,1.40e-07,10;UBERON:0001950,1.40e-07,10;UBERON:0003528,1.72e-07,29;UBERON:0002791,1.72e-07,29;UBERON:0001893,1.72e-07,29|phase1_expression=8.64803774365887,1.04692622291808,3.18499467572675,3.62957053568196,2.50447864973174,2.01455126294268,5.37309073369709,9.55512593467664,14.782815825925,9.59664557920173,19.0051944730311,14.1994443011699,17.9760766427766,11.8017543265646,23.3176833270964,20.6524772737622,35.6776557845355,22.8710069884722,21.3898516424952,15.7024171165271,15.6479653877968,8.04256704727171,7.31359409589019,5.43974237497583,3.21172993494038,2.29692785646008,0.86152399231815,2.15471232685889,4.75058548640935,3.52842181663903,3.54768817048488,26.0362576118449,30.1381745916439,31.6963362030877,10.1098066912946,6.81562045969819,10.4126371693808,9.62622750694888,9.37602413428561,6.80580867165938,7.64700934440319,6.14740936462601,10.1957174136542,7.55380907853464,6.48812359804893,5.32285581268876,15.6478268869608,14.8257106338704,13.4008571468028,12.6379434398284,9.79904951377538,11.5002051491977,16.6104779997159,27.5637613964311,18.821252751978,4.63066984864705,7.44986943840768,2.57836046138721,16.589949790487,22.7466121086974,18.3811107016792,6.77689064138264,4.4464739805557,9.89889689009539,19.7773272513395,11.3676818391376,14.6804054154018,21.1320067926855,9.85051316930538,11.8805225731888,7.57169860864975,20.2812198926701,18.3320888989839,13.8414603112898,12.8432931164437,12.8690630125403,6.60695285996332,22.2175968268227,15.0534402591119,15.2988093767025,14.0890971147711,15.6274011167028,30.7101298901519,18.5711661310454,14.0574387954665,16.2045722010517,16.7998583342941,19.5719418116566,23.3236675466207,12.69602209794,15.6526823898906,3.44169550792555,9.51959867190851,6.47643829965381,6.49776417447669,10.7526452903361,9.40977614882737,4.77204903218562,4.93593408745451,6.36011234118612,6.19711047017394,2.56652954828636,0,0,14.9378818297738,14.1881524666055,14.6602089054287,7.4219521817389,13.9826457169473,16.3286352971307,11.1030609130327,14.3098774806706,14.9900073216438,10.8520301197888,15.0513545133702,12.0639927676488,6.67426412882809,14.749134405831,27.4229271104461,12.7795811458453,17.0047969214503,14.0613823409214,16.775258509631,53.5788858531131,43.1460216035717,9.45191104271788,7.90779821739074,5.99902730993408,8.00542430560307,30.2577091597742,39.3450518424019,23.8743269014442,38.2413504423008,40.6587577155226,24.103413168909,21.5780879880118,13.1372779366908,13.6847667671102,19.2069296409593,23.3590460033986,17.0457780281142,11.9549094305406,16.5657159420921,13.4127287873786,23.9488477012674,23.8291519729821,19.3025552593041,30.7857011179429,15.9520314770303,13.2374256117473,14.7798944297717,10.302199424096,16.4047877043103,13.5818344943645,11.3180175024369,9.95171334092466,8.42655824775882,8.23513302767089,9.37739548005456,14.9130556225561,10.5536726991493,10.0834754418168,14.678173606283,12.7896750635812,12.3413690309903,12.3242990717716,9.65784245038629,11.3262382096154,10.202710694635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| ||
|EntrezGene=71997 | |||
|HGNC= | |||
|MCL_coexpression_id=1011 | |||
|UniProt=Q9DB90 | |||
|association_with_transcript=0bp_to_ENSMUST00000002280,ENSMUST00000146381,NM_028047,uc009fpm.1,uc009fpn.1_5end | |||
|description=CAGE_peak_1_at_1500002O20Rik_5end | |||
|id=chr7:25184625..25184692,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!7.62e-15!71;UBERON:0003075!7.62e-15!71;UBERON:0007284!7.62e-15!71;UBERON:0001049!1.95e-14!52;UBERON:0005068!1.95e-14!52;UBERON:0006241!1.95e-14!52;UBERON:0007135!1.95e-14!52;UBERON:0000033!1.27e-13!63;UBERON:0000153!3.64e-13!94;UBERON:0007811!4.39e-13!86;UBERON:0000955!1.30e-12!50;UBERON:0006238!1.30e-12!50;UBERON:0003056!3.52e-12!49;UBERON:0000073!3.88e-12!75;UBERON:0001016!3.88e-12!75;UBERON:0002616!5.29e-12!49;UBERON:0001017!7.51e-12!73;UBERON:0005743!7.51e-12!73;UBERON:0004121!3.11e-11!102;UBERON:0000924!3.11e-11!102;UBERON:0006601!3.11e-11!102;UBERON:0003080!8.44e-10!40;UBERON:0002780!2.64e-09!39;UBERON:0001890!2.64e-09!39;UBERON:0006240!2.64e-09!39;UBERON:0002020!5.43e-09!34;UBERON:0000475!9.22e-08!200;UBERON:0002021!1.40e-07!10;UBERON:0000411!1.40e-07!10;UBERON:0001950!1.40e-07!10;UBERON:0002791!1.72e-07!29;UBERON:0003528!1.72e-07!29;UBERON:0001893!1.72e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,3.67e-15,64;UBERON:0003075,3.67e-15,64;UBERON:0007284,3.67e-15,64;UBERON:0001049,1.95e-14,52;UBERON:0005068,1.95e-14,52;UBERON:0006241,1.95e-14,52;UBERON:0007135,1.95e-14,52;UBERON:0000073,1.23e-13,54;UBERON:0000955,7.56e-13,47;UBERON:0006238,7.56e-13,47;UBERON:0002616,3.15e-12,46;UBERON:0003056,3.52e-12,49;UBERON:0001016,3.88e-12,75;UBERON:0001017,7.51e-12,73;UBERON:0004121,4.11e-11,95;UBERON:0000924,4.11e-11,95;UBERON:0006601,4.11e-11,95;UBERON:0010371,6.63e-11,73;UBERON:0003080,8.44e-10,40;UBERON:0002780,2.64e-09,39;UBERON:0001890,2.64e-09,39;UBERON:0006240,2.64e-09,39;UBERON:0002020,5.43e-09,34;UBERON:0010314,1.22e-08,92;UBERON:0002021,1.40e-07,10;UBERON:0000411,1.40e-07,10;UBERON:0001950,1.40e-07,10;UBERON:0003528,1.72e-07,29;UBERON:0002791,1.72e-07,29;UBERON:0001893,1.72e-07,29 | |||
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| |||
|short_description=p1@1500002O20Rik | |||
}} |
Revision as of 12:47, 14 September 2013
Short description: | p1@1500002O20Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_1500002O20Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:1011 |
Association with transcript: | 0bp_to_ENSMUST00000002280, ENSMUST00000146381, NM_028047, uc009fpm.1, uc009fpn.1_5end |
EntrezGene: | 1500002O20Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neurectoderm | 3.67e-15 | 64 |
neural plate | 3.67e-15 | 64 |
presumptive neural plate | 3.67e-15 | 64 |
neural tube | 1.95e-14 | 52 |
neural rod | 1.95e-14 | 52 |
future spinal cord | 1.95e-14 | 52 |
neural keel | 1.95e-14 | 52 |
regional part of nervous system | 1.23e-13 | 54 |
brain | 7.56e-13 | 47 |
future brain | 7.56e-13 | 47 |
regional part of brain | 3.15e-12 | 46 |
pre-chordal neural plate | 3.52e-12 | 49 |
nervous system | 3.88e-12 | 75 |
central nervous system | 7.51e-12 | 73 |
ectoderm-derived structure | 4.11e-11 | 95 |
ectoderm | 4.11e-11 | 95 |
presumptive ectoderm | 4.11e-11 | 95 |
ecto-epithelium | 6.63e-11 | 73 |
anterior neural tube | 8.44e-10 | 40 |
regional part of forebrain | 2.64e-09 | 39 |
forebrain | 2.64e-09 | 39 |
future forebrain | 2.64e-09 | 39 |
gray matter | 5.43e-09 | 34 |
structure with developmental contribution from neural crest | 1.22e-08 | 92 |
occipital lobe | 1.40e-07 | 10 |
visual cortex | 1.40e-07 | 10 |
neocortex | 1.40e-07 | 10 |
brain grey matter | 1.72e-07 | 29 |
regional part of telencephalon | 1.72e-07 | 29 |
telencephalon | 1.72e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.