FFCP PHASE1:Mm9::chr7:25292160..25292213,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=232969|HGNC=|MCL_coexpression_id=1427|UniProt=E9PZE0|association_with_transcript=11bp_to_ENSMUST00000085998_5end|description=CAGE_peak_3_at_Zfp428_5end|id=chr7:25292160..25292213,+|ontology_enrichment_celltype=CL:0000221!9.48e-22!44;CL:0000133!9.48e-22!44;CL:0002319!1.74e-21!43;CL:0000055!2.62e-18!50;CL:0000540!5.58e-17!33;CL:0000047!5.58e-17!33;CL:0000031!5.58e-17!33;CL:0000404!5.58e-17!33;CL:0000393!5.32e-15!39;CL:0000211!5.32e-15!39;CL:0000117!8.44e-15!23;CL:0000337!8.44e-15!23;CL:0002321!1.12e-11!70;CL:0000220!1.12e-11!70|ontology_enrichment_celltype_v019_2=CL:0000221,5.42e-23,44;CL:0000133,5.42e-23,44;CL:0002319,1.04e-22,43;CL:0000540,6.30e-18,33;CL:0000047,6.30e-18,33;CL:0000031,6.30e-18,33;CL:0000404,6.30e-18,33;CL:0000393,9.53e-16,39;CL:0000211,9.53e-16,39;CL:0000117,1.30e-15,23;CL:0000337,1.30e-15,23;CL:0002321,4.48e-13,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.36e-36!73;UBERON:0005743!2.36e-36!73;UBERON:0000073!5.11e-36!75;UBERON:0001016!5.11e-36!75;UBERON:0004121!8.47e-27!102;UBERON:0000924!8.47e-27!102;UBERON:0006601!8.47e-27!102;UBERON:0001049!1.68e-25!52;UBERON:0005068!1.68e-25!52;UBERON:0006241!1.68e-25!52;UBERON:0007135!1.68e-25!52;UBERON:0000955!2.37e-24!50;UBERON:0006238!2.37e-24!50;UBERON:0000033!4.71e-24!63;UBERON:0002616!8.38e-24!49;UBERON:0002346!3.64e-22!71;UBERON:0003075!3.64e-22!71;UBERON:0007284!3.64e-22!71;UBERON:0003080!1.65e-20!40;UBERON:0002020!1.70e-20!34;UBERON:0003056!3.38e-20!49;UBERON:0002780!4.53e-20!39;UBERON:0001890!4.53e-20!39;UBERON:0006240!4.53e-20!39;UBERON:0002791!1.33e-17!29;UBERON:0003528!1.33e-17!29;UBERON:0001893!1.33e-17!29;UBERON:0007811!9.25e-15!86;UBERON:0000153!9.40e-14!94;UBERON:0000956!2.98e-13!21;UBERON:0001869!2.98e-13!21;UBERON:0000203!2.98e-13!21;UBERON:0002619!9.35e-11!17;UBERON:0002021!9.20e-07!10;UBERON:0000411!9.20e-07!10;UBERON:0001950!9.20e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.67e-38,73;UBERON:0001016,3.80e-38,75;UBERON:0004121,1.13e-30,95;UBERON:0000924,1.13e-30,95;UBERON:0006601,1.13e-30,95;UBERON:0000073,1.73e-28,54;UBERON:0002346,5.76e-28,64;UBERON:0003075,5.76e-28,64;UBERON:0007284,5.76e-28,64;UBERON:0001049,5.64e-27,52;UBERON:0005068,5.64e-27,52;UBERON:0006241,5.64e-27,52;UBERON:0007135,5.64e-27,52;UBERON:0000955,7.02e-24,47;UBERON:0006238,7.02e-24,47;UBERON:0002616,2.62e-23,46;UBERON:0010371,5.00e-23,73;UBERON:0003080,1.12e-21,40;UBERON:0002020,1.16e-21,34;UBERON:0003056,2.41e-21,49;UBERON:0002780,3.29e-21,39;UBERON:0001890,3.29e-21,39;UBERON:0006240,3.29e-21,39;UBERON:0010314,9.00e-20,92;UBERON:0003528,1.37e-18,29;UBERON:0002791,1.37e-18,29;UBERON:0001893,1.37e-18,29;UBERON:0000956,5.72e-14,21;UBERON:0001869,5.72e-14,21;UBERON:0000203,5.72e-14,21;UBERON:0002619,2.55e-11,17;UBERON:0002021,4.39e-07,10;UBERON:0000411,4.39e-07,10;UBERON:0001950,4.39e-07,10|phase1_expression=6.24580503708696,0.348975407639361,0.909998478779072,0,0.500895729946347,0.33575854382378,1.40167584357315,0.516493293766305,0.422366166455,0.234064526321993,1.19852577757853,1.91453181588807,0.513602189793617,0.174840804837995,0,0,0.699561878128147,0.630924330716475,0.137114433605739,1.27316895539409,1.87095238332354,1.58865521921416,1.04479915655574,0.639969691173627,0.22940928106717,0.57423196411502,0.430761996159075,0.646413698057667,0.760093677825496,0.252030129759931,0.665191531965914,1.27006134691926,1.84519436275371,0,1.73310971850765,1.49611180822643,1.02084678131185,0,0,0,0,0,0,1.38486499773135,1.11514624341466,2.0190142737785,9.38869613217647,42.0788551814262,19.552070263368,10.1103547518627,12.3188051030319,35.9381410912429,0,0.725362142011344,0,1.54355661621568,0.573066879877513,3.09403255366465,37.4285452590256,31.739458756322,49.438849473482,4.74382344896785,5.33576877666684,0.449949858640699,3.9554654502679,2.8419204597844,13.4820049733282,36.8849573108692,36.3950539202757,44.5519596494579,42.9062921156819,11.4260393761521,12.1477697523387,40.1769821425049,32.8749965592551,58.8300023430413,17.6185409599022,9.83192503255945,10.5988507946808,21.101806036831,19.8528186617229,18.2319679694866,9.21303896704557,7.87867654044352,7.18151764551008,12.6690291753677,11.6744778255264,23.6727296198132,2.04460721999597,1.51143120213571,0.289864488701678,0,0,0,0,0.448026887097336,0.561777680527007,0.681721290312231,2.33807404142582,1.06001872353102,3.66192891419369,2.56652954828636,2.54805239706646,7.11066703153331,2.16491041011214,2.78695852022608,1.01104889002957,0.79928715803342,0,0.29688427812965,1.04091196059682,1.21786191324856,0.922461989024234,0.753613202763113,0.470354828542819,1.13099932196708,0.741584903203122,0.144599356919912,0,1.45590164952668,0.441683036920787,0.484875253135222,0,1.75668478206928,2.30391377494801,0.510914110417183,0.599075622529601,0.599902730993408,0.762421362438388,6.44099749440738,8.6925114535539,26.3874139437015,8.34356736922927,4.60287823194595,6.44142938134636,5.02947915510049,1.01839363850316,0.124406970610093,1.0108910337347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| ||
|EntrezGene=232969 | |||
|HGNC= | |||
|MCL_coexpression_id=1427 | |||
|UniProt=E9PZE0 | |||
|association_with_transcript=11bp_to_ENSMUST00000085998_5end | |||
|description=CAGE_peak_3_at_Zfp428_5end | |||
|id=chr7:25292160..25292213,+ | |||
|ontology_enrichment_celltype=CL:0000221!9.48e-22!44;CL:0000133!9.48e-22!44;CL:0002319!1.74e-21!43;CL:0000055!2.62e-18!50;CL:0000540!5.58e-17!33;CL:0000047!5.58e-17!33;CL:0000031!5.58e-17!33;CL:0000404!5.58e-17!33;CL:0000393!5.32e-15!39;CL:0000211!5.32e-15!39;CL:0000117!8.44e-15!23;CL:0000337!8.44e-15!23;CL:0002321!1.12e-11!70;CL:0000220!1.12e-11!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.42e-23,44;CL:0000133,5.42e-23,44;CL:0002319,1.04e-22,43;CL:0000540,6.30e-18,33;CL:0000047,6.30e-18,33;CL:0000031,6.30e-18,33;CL:0000404,6.30e-18,33;CL:0000393,9.53e-16,39;CL:0000211,9.53e-16,39;CL:0000117,1.30e-15,23;CL:0000337,1.30e-15,23;CL:0002321,4.48e-13,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.36e-36!73;UBERON:0005743!2.36e-36!73;UBERON:0000073!5.11e-36!75;UBERON:0001016!5.11e-36!75;UBERON:0004121!8.47e-27!102;UBERON:0000924!8.47e-27!102;UBERON:0006601!8.47e-27!102;UBERON:0001049!1.68e-25!52;UBERON:0005068!1.68e-25!52;UBERON:0006241!1.68e-25!52;UBERON:0007135!1.68e-25!52;UBERON:0000955!2.37e-24!50;UBERON:0006238!2.37e-24!50;UBERON:0000033!4.71e-24!63;UBERON:0002616!8.38e-24!49;UBERON:0002346!3.64e-22!71;UBERON:0003075!3.64e-22!71;UBERON:0007284!3.64e-22!71;UBERON:0003080!1.65e-20!40;UBERON:0002020!1.70e-20!34;UBERON:0003056!3.38e-20!49;UBERON:0002780!4.53e-20!39;UBERON:0001890!4.53e-20!39;UBERON:0006240!4.53e-20!39;UBERON:0002791!1.33e-17!29;UBERON:0003528!1.33e-17!29;UBERON:0001893!1.33e-17!29;UBERON:0007811!9.25e-15!86;UBERON:0000153!9.40e-14!94;UBERON:0000956!2.98e-13!21;UBERON:0001869!2.98e-13!21;UBERON:0000203!2.98e-13!21;UBERON:0002619!9.35e-11!17;UBERON:0002021!9.20e-07!10;UBERON:0000411!9.20e-07!10;UBERON:0001950!9.20e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.67e-38,73;UBERON:0001016,3.80e-38,75;UBERON:0004121,1.13e-30,95;UBERON:0000924,1.13e-30,95;UBERON:0006601,1.13e-30,95;UBERON:0000073,1.73e-28,54;UBERON:0002346,5.76e-28,64;UBERON:0003075,5.76e-28,64;UBERON:0007284,5.76e-28,64;UBERON:0001049,5.64e-27,52;UBERON:0005068,5.64e-27,52;UBERON:0006241,5.64e-27,52;UBERON:0007135,5.64e-27,52;UBERON:0000955,7.02e-24,47;UBERON:0006238,7.02e-24,47;UBERON:0002616,2.62e-23,46;UBERON:0010371,5.00e-23,73;UBERON:0003080,1.12e-21,40;UBERON:0002020,1.16e-21,34;UBERON:0003056,2.41e-21,49;UBERON:0002780,3.29e-21,39;UBERON:0001890,3.29e-21,39;UBERON:0006240,3.29e-21,39;UBERON:0010314,9.00e-20,92;UBERON:0003528,1.37e-18,29;UBERON:0002791,1.37e-18,29;UBERON:0001893,1.37e-18,29;UBERON:0000956,5.72e-14,21;UBERON:0001869,5.72e-14,21;UBERON:0000203,5.72e-14,21;UBERON:0002619,2.55e-11,17;UBERON:0002021,4.39e-07,10;UBERON:0000411,4.39e-07,10;UBERON:0001950,4.39e-07,10 | |||
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| |||
|short_description=p3@Zfp428 | |||
}} |
Revision as of 12:48, 14 September 2013
Short description: | p3@Zfp428 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Zfp428_5end |
Coexpression cluster: | MCL_coexpression_mm9:1427 |
Association with transcript: | 11bp_to_ENSMUST00000085998_5end |
EntrezGene: | Zfp428 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.42e-23 | 44 |
neurectodermal cell | 5.42e-23 | 44 |
neural cell | 1.04e-22 | 43 |
neuron | 6.30e-18 | 33 |
neuronal stem cell | 6.30e-18 | 33 |
neuroblast | 6.30e-18 | 33 |
electrically signaling cell | 6.30e-18 | 33 |
electrically responsive cell | 9.53e-16 | 39 |
electrically active cell | 9.53e-16 | 39 |
CNS neuron (sensu Vertebrata) | 1.30e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.30e-15 | 23 |
embryonic cell | 4.48e-13 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.67e-38 | 73 |
nervous system | 3.80e-38 | 75 |
ectoderm-derived structure | 1.13e-30 | 95 |
ectoderm | 1.13e-30 | 95 |
presumptive ectoderm | 1.13e-30 | 95 |
regional part of nervous system | 1.73e-28 | 54 |
neurectoderm | 5.76e-28 | 64 |
neural plate | 5.76e-28 | 64 |
presumptive neural plate | 5.76e-28 | 64 |
neural tube | 5.64e-27 | 52 |
neural rod | 5.64e-27 | 52 |
future spinal cord | 5.64e-27 | 52 |
neural keel | 5.64e-27 | 52 |
brain | 7.02e-24 | 47 |
future brain | 7.02e-24 | 47 |
regional part of brain | 2.62e-23 | 46 |
ecto-epithelium | 5.00e-23 | 73 |
anterior neural tube | 1.12e-21 | 40 |
gray matter | 1.16e-21 | 34 |
pre-chordal neural plate | 2.41e-21 | 49 |
regional part of forebrain | 3.29e-21 | 39 |
forebrain | 3.29e-21 | 39 |
future forebrain | 3.29e-21 | 39 |
structure with developmental contribution from neural crest | 9.00e-20 | 92 |
brain grey matter | 1.37e-18 | 29 |
regional part of telencephalon | 1.37e-18 | 29 |
telencephalon | 1.37e-18 | 29 |
cerebral cortex | 5.72e-14 | 21 |
cerebral hemisphere | 5.72e-14 | 21 |
pallium | 5.72e-14 | 21 |
regional part of cerebral cortex | 2.55e-11 | 17 |
occipital lobe | 4.39e-07 | 10 |
visual cortex | 4.39e-07 | 10 |
neocortex | 4.39e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.