FFCP PHASE1:Mm9::chr9:106356243..106356264,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=59092|HGNC=|MCL_coexpression_id=1773|UniProt=P57724,Q8BP63|association_with_transcript=55bp_to_ENSMUST00000024260,uc009rjt.2_5end|description=CAGE_peak_2_at_Pcbp4_5end|id=chr9:106356243..106356264,+|ontology_enrichment_celltype=CL:0000221!2.20e-25!44;CL:0000133!2.20e-25!44;CL:0002319!1.25e-24!43;CL:0000055!1.48e-23!50;CL:0000540!8.93e-18!33;CL:0000047!8.93e-18!33;CL:0000031!8.93e-18!33;CL:0000404!8.93e-18!33;CL:0000393!2.12e-17!39;CL:0000211!2.12e-17!39;CL:0002321!1.79e-12!70;CL:0000220!1.79e-12!70;CL:0000117!3.05e-12!23;CL:0000337!3.05e-12!23;CL:0000333!1.08e-07!10;CL:0000095!1.08e-07!10;CL:0000243!1.08e-07!10;CL:0000123!1.08e-07!10;CL:0000125!1.08e-07!10;CL:0000030!1.08e-07!10;CL:0000339!1.08e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,5.21e-26,44;CL:0000133,5.21e-26,44;CL:0002319,3.10e-25,43;CL:0000540,3.35e-18,33;CL:0000047,3.35e-18,33;CL:0000031,3.35e-18,33;CL:0000404,3.35e-18,33;CL:0000393,8.13e-18,39;CL:0000211,8.13e-18,39;CL:0002321,5.38e-13,70;CL:0000117,1.60e-12,23;CL:0000337,1.60e-12,23;CL:0000333,7.43e-08,10;CL:0000095,7.43e-08,10;CL:0000243,7.43e-08,10;CL:0000123,7.43e-08,10;CL:0000125,7.43e-08,10;CL:0000030,7.43e-08,10;CL:0000339,7.43e-08,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!3.06e-27!75;UBERON:0001016!3.06e-27!75;UBERON:0004121!3.57e-26!102;UBERON:0000924!3.57e-26!102;UBERON:0006601!3.57e-26!102;UBERON:0001017!9.30e-26!73;UBERON:0005743!9.30e-26!73;UBERON:0002346!5.06e-18!71;UBERON:0003075!5.06e-18!71;UBERON:0007284!5.06e-18!71;UBERON:0000033!2.81e-17!63;UBERON:0001049!2.10e-14!52;UBERON:0005068!2.10e-14!52;UBERON:0006241!2.10e-14!52;UBERON:0007135!2.10e-14!52;UBERON:0003056!1.27e-13!49;UBERON:0002616!3.88e-13!49;UBERON:0000955!7.16e-13!50;UBERON:0006238!7.16e-13!50;UBERON:0003080!7.81e-10!40;UBERON:0002020!8.21e-10!34;UBERON:0002780!1.49e-09!39;UBERON:0001890!1.49e-09!39;UBERON:0006240!1.49e-09!39;UBERON:0000153!2.39e-08!94;UBERON:0002791!5.99e-08!29;UBERON:0003528!5.99e-08!29;UBERON:0001893!5.99e-08!29;UBERON:0000025!8.01e-08!114;UBERON:0004111!1.34e-07!122;UBERON:0000010!1.53e-07!11;UBERON:0007811!1.88e-07!86;UBERON:0000468!8.66e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.23e-28,95;UBERON:0000924,3.23e-28,95;UBERON:0006601,3.23e-28,95;UBERON:0001016,6.46e-28,75;UBERON:0001017,2.15e-26,73;UBERON:0010314,1.53e-23,92;UBERON:0002346,1.14e-20,64;UBERON:0003075,1.14e-20,64;UBERON:0007284,1.14e-20,64;UBERON:0010371,1.56e-18,73;UBERON:0000073,1.59e-15,54;UBERON:0001049,9.69e-15,52;UBERON:0005068,9.69e-15,52;UBERON:0006241,9.69e-15,52;UBERON:0007135,9.69e-15,52;UBERON:0003056,6.15e-14,49;UBERON:0002616,2.88e-12,46;UBERON:0000955,5.31e-12,47;UBERON:0006238,5.31e-12,47;UBERON:0003080,4.74e-10,40;UBERON:0002020,4.99e-10,34;UBERON:0002780,9.17e-10,39;UBERON:0001890,9.17e-10,39;UBERON:0006240,9.17e-10,39;UBERON:0003528,4.07e-08,29;UBERON:0002791,4.07e-08,29;UBERON:0001893,4.07e-08,29;UBERON:0000010,1.07e-07,11;UBERON:0000025,1.33e-07,114;UBERON:0004111,3.75e-07,122|phase1_expression=15.2141404749554,0.348975407639361,0.454999239389536,0,0.500895729946347,1.17515490338323,1.16806320297763,0,0.140788722151667,0,0,0,0,0,0,0,0,0.157731082679119,0,0,2.04103896362567,0.595745707205312,0.261199789138935,0,0.22940928106717,0,0,0.215471232685889,0,0.252030129759931,0.443461021310609,0,1.23012957516914,0,0,0.166234645358492,0,0,0,0,0,0,0,5.41356317294982,5.06884656097573,4.22157529971868,14.0830441982647,49.2736853419809,29.8773208518882,28.1923353657711,18.8981669194239,43.1257693094915,0,0,0,12.6057123657614,6.01720223871389,3.6097046459421,28.7289374420629,23.2756030879694,28.5224131577781,19.3141383279405,16.0073063300005,0.449949858640699,0,0.7104801149461,28.4620104992484,29.5848095097597,20.3231640124616,17.8207838597832,22.0841209418951,16.8534080798244,16.1234034894678,23.885705846916,25.0156679357597,22.0612508786405,11.0115880999389,11.3641730895817,14.7462271925994,27.5642341356105,23.9697626238313,22.9201883044974,11.725685958058,11.2552522006336,12.071061574368,10.9012576625257,9.11178757114259,12.6751623161204,39.907703886588,25.3920441958799,2.02905142091174,1.72084775396277,1.3599426674155,0,0,0,3.23022166303029,4.26075806445144,5.71529210126311,8.83348936275851,28.7320576344428,7.69958864485907,2.54805239706646,7.11066703153331,1.5154372870785,1.77351905832569,0.505524445014783,0.45673551887624,0.258937883647172,0.890652834388949,4.68410382268567,3.65358573974569,3.68984795609694,2.26083960828934,2.4693628498498,0.753999547978053,0.494389935468748,1.87979163995885,1.76922110389975,5.82360659810673,1.76673214768315,0.484875253135222,1.86391761218122,6.73395833126558,7.12118803165747,0.255457055208591,0,0,0,8.83764772488454,7.77751024791665,12.062817802835,4.34560800480691,8.18289463457058,10.1816141834184,7.13861557498134,6.41587992256993,0.746441823660558,0.252722758433675,5.05060454127538,16.6554166992261,23.6799167566477,25.3887603025542,18.3859877759572,23.0643732123001,22.163673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| ||
|EntrezGene=59092 | |||
|HGNC= | |||
|MCL_coexpression_id=1773 | |||
|UniProt=P57724,Q8BP63 | |||
|association_with_transcript=55bp_to_ENSMUST00000024260,uc009rjt.2_5end | |||
|description=CAGE_peak_2_at_Pcbp4_5end | |||
|id=chr9:106356243..106356264,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.20e-25!44;CL:0000133!2.20e-25!44;CL:0002319!1.25e-24!43;CL:0000055!1.48e-23!50;CL:0000540!8.93e-18!33;CL:0000047!8.93e-18!33;CL:0000031!8.93e-18!33;CL:0000404!8.93e-18!33;CL:0000393!2.12e-17!39;CL:0000211!2.12e-17!39;CL:0002321!1.79e-12!70;CL:0000220!1.79e-12!70;CL:0000117!3.05e-12!23;CL:0000337!3.05e-12!23;CL:0000333!1.08e-07!10;CL:0000095!1.08e-07!10;CL:0000243!1.08e-07!10;CL:0000123!1.08e-07!10;CL:0000125!1.08e-07!10;CL:0000030!1.08e-07!10;CL:0000339!1.08e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.21e-26,44;CL:0000133,5.21e-26,44;CL:0002319,3.10e-25,43;CL:0000540,3.35e-18,33;CL:0000047,3.35e-18,33;CL:0000031,3.35e-18,33;CL:0000404,3.35e-18,33;CL:0000393,8.13e-18,39;CL:0000211,8.13e-18,39;CL:0002321,5.38e-13,70;CL:0000117,1.60e-12,23;CL:0000337,1.60e-12,23;CL:0000333,7.43e-08,10;CL:0000095,7.43e-08,10;CL:0000243,7.43e-08,10;CL:0000123,7.43e-08,10;CL:0000125,7.43e-08,10;CL:0000030,7.43e-08,10;CL:0000339,7.43e-08,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!3.06e-27!75;UBERON:0001016!3.06e-27!75;UBERON:0004121!3.57e-26!102;UBERON:0000924!3.57e-26!102;UBERON:0006601!3.57e-26!102;UBERON:0001017!9.30e-26!73;UBERON:0005743!9.30e-26!73;UBERON:0002346!5.06e-18!71;UBERON:0003075!5.06e-18!71;UBERON:0007284!5.06e-18!71;UBERON:0000033!2.81e-17!63;UBERON:0001049!2.10e-14!52;UBERON:0005068!2.10e-14!52;UBERON:0006241!2.10e-14!52;UBERON:0007135!2.10e-14!52;UBERON:0003056!1.27e-13!49;UBERON:0002616!3.88e-13!49;UBERON:0000955!7.16e-13!50;UBERON:0006238!7.16e-13!50;UBERON:0003080!7.81e-10!40;UBERON:0002020!8.21e-10!34;UBERON:0002780!1.49e-09!39;UBERON:0001890!1.49e-09!39;UBERON:0006240!1.49e-09!39;UBERON:0000153!2.39e-08!94;UBERON:0002791!5.99e-08!29;UBERON:0003528!5.99e-08!29;UBERON:0001893!5.99e-08!29;UBERON:0000025!8.01e-08!114;UBERON:0004111!1.34e-07!122;UBERON:0000010!1.53e-07!11;UBERON:0007811!1.88e-07!86;UBERON:0000468!8.66e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.23e-28,95;UBERON:0000924,3.23e-28,95;UBERON:0006601,3.23e-28,95;UBERON:0001016,6.46e-28,75;UBERON:0001017,2.15e-26,73;UBERON:0010314,1.53e-23,92;UBERON:0002346,1.14e-20,64;UBERON:0003075,1.14e-20,64;UBERON:0007284,1.14e-20,64;UBERON:0010371,1.56e-18,73;UBERON:0000073,1.59e-15,54;UBERON:0001049,9.69e-15,52;UBERON:0005068,9.69e-15,52;UBERON:0006241,9.69e-15,52;UBERON:0007135,9.69e-15,52;UBERON:0003056,6.15e-14,49;UBERON:0002616,2.88e-12,46;UBERON:0000955,5.31e-12,47;UBERON:0006238,5.31e-12,47;UBERON:0003080,4.74e-10,40;UBERON:0002020,4.99e-10,34;UBERON:0002780,9.17e-10,39;UBERON:0001890,9.17e-10,39;UBERON:0006240,9.17e-10,39;UBERON:0003528,4.07e-08,29;UBERON:0002791,4.07e-08,29;UBERON:0001893,4.07e-08,29;UBERON:0000010,1.07e-07,11;UBERON:0000025,1.33e-07,114;UBERON:0004111,3.75e-07,122 | |||
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| |||
|short_description=p2@Pcbp4 | |||
}} |
Revision as of 16:43, 14 September 2013
Short description: | p2@Pcbp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Pcbp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1773 |
Association with transcript: | 55bp_to_ENSMUST00000024260, uc009rjt.2_5end |
EntrezGene: | Pcbp4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.21e-26 | 44 |
neurectodermal cell | 5.21e-26 | 44 |
neural cell | 3.10e-25 | 43 |
neuron | 3.35e-18 | 33 |
neuronal stem cell | 3.35e-18 | 33 |
neuroblast | 3.35e-18 | 33 |
electrically signaling cell | 3.35e-18 | 33 |
electrically responsive cell | 8.13e-18 | 39 |
electrically active cell | 8.13e-18 | 39 |
embryonic cell | 5.38e-13 | 70 |
CNS neuron (sensu Vertebrata) | 1.60e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.60e-12 | 23 |
migratory neural crest cell | 7.43e-08 | 10 |
neuron associated cell | 7.43e-08 | 10 |
glial cell (sensu Vertebrata) | 7.43e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 7.43e-08 | 10 |
glial cell | 7.43e-08 | 10 |
glioblast | 7.43e-08 | 10 |
glioblast (sensu Vertebrata) | 7.43e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.23e-28 | 95 |
ectoderm | 3.23e-28 | 95 |
presumptive ectoderm | 3.23e-28 | 95 |
nervous system | 6.46e-28 | 75 |
central nervous system | 2.15e-26 | 73 |
structure with developmental contribution from neural crest | 1.53e-23 | 92 |
neurectoderm | 1.14e-20 | 64 |
neural plate | 1.14e-20 | 64 |
presumptive neural plate | 1.14e-20 | 64 |
ecto-epithelium | 1.56e-18 | 73 |
regional part of nervous system | 1.59e-15 | 54 |
neural tube | 9.69e-15 | 52 |
neural rod | 9.69e-15 | 52 |
future spinal cord | 9.69e-15 | 52 |
neural keel | 9.69e-15 | 52 |
pre-chordal neural plate | 6.15e-14 | 49 |
regional part of brain | 2.88e-12 | 46 |
brain | 5.31e-12 | 47 |
future brain | 5.31e-12 | 47 |
anterior neural tube | 4.74e-10 | 40 |
gray matter | 4.99e-10 | 34 |
regional part of forebrain | 9.17e-10 | 39 |
forebrain | 9.17e-10 | 39 |
future forebrain | 9.17e-10 | 39 |
brain grey matter | 4.07e-08 | 29 |
regional part of telencephalon | 4.07e-08 | 29 |
telencephalon | 4.07e-08 | 29 |
peripheral nervous system | 1.07e-07 | 11 |
tube | 1.33e-07 | 114 |
anatomical conduit | 3.75e-07 | 122 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.