FFCP PHASE1:Mm9::chr9:89804729..89804762,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=19417|HGNC=|MCL_coexpression_id=1|UniProt=Q9QZR7,P27671,B2RS27|association_with_transcript=116bp_to_ENSMUST00000034909,ENSMUST00000034912,NM_001039655,NM_011245,uc009qzr.1,uc009qzs.1,uc009qzt.1_5end|description=CAGE_peak_1_at_Rasgrf1_5end|id=chr9:89804729..89804762,+|ontology_enrichment_celltype=CL:0000117!1.98e-10!23;CL:0000337!1.98e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,6.90e-12,23;CL:0000337,6.90e-12,23;CL:0000540,9.07e-07,33;CL:0000047,9.07e-07,33;CL:0000031,9.07e-07,33;CL:0000404,9.07e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.01e-19!63;UBERON:0001049!7.26e-19!52;UBERON:0005068!7.26e-19!52;UBERON:0006241!7.26e-19!52;UBERON:0007135!7.26e-19!52;UBERON:0000955!5.13e-18!50;UBERON:0006238!5.13e-18!50;UBERON:0001017!1.33e-17!73;UBERON:0005743!1.33e-17!73;UBERON:0004121!1.63e-17!102;UBERON:0000924!1.63e-17!102;UBERON:0006601!1.63e-17!102;UBERON:0000073!2.52e-17!75;UBERON:0001016!2.52e-17!75;UBERON:0002616!2.62e-17!49;UBERON:0002346!9.51e-17!71;UBERON:0003075!9.51e-17!71;UBERON:0007284!9.51e-17!71;UBERON:0003056!4.92e-15!49;UBERON:0002020!2.01e-14!34;UBERON:0003080!4.80e-14!40;UBERON:0002780!2.37e-13!39;UBERON:0001890!2.37e-13!39;UBERON:0006240!2.37e-13!39;UBERON:0002791!1.01e-11!29;UBERON:0003528!1.01e-11!29;UBERON:0001893!1.01e-11!29;UBERON:0000956!3.44e-08!21;UBERON:0001869!3.44e-08!21;UBERON:0000203!3.44e-08!21;UBERON:0002021!1.82e-07!10;UBERON:0000411!1.82e-07!10;UBERON:0001950!1.82e-07!10;UBERON:0007811!2.46e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.22e-23,54;UBERON:0001049,9.07e-22,52;UBERON:0005068,9.07e-22,52;UBERON:0006241,9.07e-22,52;UBERON:0007135,9.07e-22,52;UBERON:0001017,1.89e-21,73;UBERON:0001016,2.80e-20,75;UBERON:0002346,1.78e-19,64;UBERON:0003075,1.78e-19,64;UBERON:0007284,1.78e-19,64;UBERON:0000955,2.74e-18,47;UBERON:0006238,2.74e-18,47;UBERON:0002020,1.46e-17,34;UBERON:0010371,1.76e-17,73;UBERON:0002616,1.90e-17,46;UBERON:0004121,3.24e-17,95;UBERON:0000924,3.24e-17,95;UBERON:0006601,3.24e-17,95;UBERON:0003080,8.29e-16,40;UBERON:0003056,1.76e-15,49;UBERON:0002780,5.82e-15,39;UBERON:0001890,5.82e-15,39;UBERON:0006240,5.82e-15,39;UBERON:0003528,3.57e-14,29;UBERON:0002791,3.57e-14,29;UBERON:0001893,3.57e-14,29;UBERON:0010314,6.68e-11,92;UBERON:0000956,9.44e-10,21;UBERON:0001869,9.44e-10,21;UBERON:0000203,9.44e-10,21;UBERON:0002021,5.56e-09,10;UBERON:0000411,5.56e-09,10;UBERON:0001950,5.56e-09,10;UBERON:0002619,1.94e-07,17|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.7152165005496,0,0,0.159992422793407,0,0,0,0,0.190023419456374,1.00812051903972,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0,1.25987779462826,1.43752564364972,0,0,0,0,0,0,2.83243045203437,3.70293685490423,3.1691570175309,0.338844532069132,0,0.449949858640699,0,0,1.19840044207362,1.53687322128622,4.97710139080693,4.05017814995072,6.52007380189284,55.7019419587417,60.0762431388389,2.20483438586917,1.72521847832825,0.919218786610021,179.488886029004,231.11408193419,232.099471750184,1.71452174049252,3.20206752608434,2.08365348222704,219.996203213088,180.084035210138,186.261064039932,40.6587447953661,43.2809909629273,12.3023634244698,0.37863096666592,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0,7.44355426698285,0,0,0,8.87313544593087,0,0,0,0,0,0,6.73684890342454,0,40.3762618256323,0,0.608930956624282,0,0.150722640552623,0.823120949949934,4.77533047052767,0.741584903203122,0.722996784599558,0,0,0,0,0,122.96793474485,110.378414490691,1.78819938646014,0.838705871541442,0,0.254140454146129,365.938532065982,279.075367719362,25.5078334789115,239.356088904765,170.817925496661,259.319479610331,231.842764923826,0.101839363850316,8.45967400148633,49.0282151361329,8.62811609134543,0.260240885925407,0.689706313300419,0.720248519221397,1.80845781402858,1.15662048557257,1.2811372028485,1.40552586839593,19.9201595469042,0.215567992932842,0,0.351902248327898,0.43839146485515,1.11218899690239,1.0447564995665,0.205782136407943,0.199034266818493,0,0.257347907114715,0,0.207125772535502,0.234526059981096,0,0.473489471170421,0.590292695242212,0,0,0,0,0.16455984991348,0,0,0,0,0,425.206275996665,2.77842453424068,4.62586296177317,1.05780226665418,0.213288250535234,0,0,1.00841762311671,0.22237804384487,0.190225626112559,0,0,0.502670417600539,0.198956472041151,0.38992817423824,0,0,0,0.569003702859245,0.342745537829186,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0,0,0,0.312037673114561,0.252578877947112,0,0,2.40179147216586,0.189491411770485,0.488894929326078,1.01847051465113,0.938760993154008,0.502518772325447,0.238043640886014,0.585400943573396,1.10344600874334,1.55025282754142,0.637819074629948,0.491589944147214,0.345369963731791,0.289298117163023,0,9.24639662491806,0,0.551873492609465,336.6745872044,268.180338922961,0,0,0,0,0,0,0,0,0,0.292255857911312,0.395287777946524,271.195191060005,1.41940085208269,0.712262414669021,0.488660878060728,2.47455184458803,0,2.42780636154981,3.02323556964751,3.20628635585027,3.54362271456927,3.07435147943927,5.42699415653264,3.99887102425256,4.63446591900138,2.21225730555071,0,1.03135543248187,39.4909942674394,0.18006109403131,0.258717367565509,0.643011105094777,2.48276327099183,1.24858172321449,1.31639216481697,3.65357938937519,0.23467170806371,4.2366414172764,0.661585194164886,1.97863503529776,0.968786560175433,0.482503399425247,0.119372344003136,0.492422699235184,0.291480836629851,283.515286774069,0.170870880797853,0.619160603889667,0.370389054739423,0,0,0,3.0596117398894,4.61839792668071,4.14599921413271,0,0.158167996790568,0.203319467126849,0.648032044930808,0.209088296014469,0.218362563746178,0.404593039154462,0.330613822901344,0.26175594198403,0,0,0,0,0,0.583353565032143,0.129159823477731,0.675824501963113,0.234714477291508,0,0,0,1.15212002503146,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0.350630706544707,0.226730383615211,0.665957860122194,0,0.335769232728157,1.54551675225752,1.50145980360946,6.77661009788881,2.78678892802786,2.00628841614145,110.126609310328,117.38293530933,118.589371281955,97.4407543888709,180.176702699679,215.287260756065,156.605220053779,186.883299338052,180.803821184698,203.479802518465,0,0,1.02440163452481,1.21553358534147,0.419226325255965,3.12533964365024,3.33370091702423,2.88449080134452,2.88827288632634,2.52697211763797,3.29523089857312,2.26351609663291,2.43467919421694,2.62503124859964,2.5845961030026,2.85776214769844,3.82418275618023,1.92909220463705,2.47251540481984,1.76638704161277,1.37147700954166,1.95223386775271,2.86123427936785,3.48831399917588,1.97629698872194,2.70766745253365,2.37806364734604,3.94604567156764,2.17286582153379,2.80571135828869,2.13543032623513,2.26560309463796,3.27384834535751,2.94379998253335,2.70069255373598,3.74715866906919,2.10538447600868,1.71896843238639,2.86932498103265,1.76473135295612,3.47801753430632|short_description=p1@Rasgrf1}} | ||
|EntrezGene=19417 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q9QZR7,P27671,B2RS27 | |||
|association_with_transcript=116bp_to_ENSMUST00000034909,ENSMUST00000034912,NM_001039655,NM_011245,uc009qzr.1,uc009qzs.1,uc009qzt.1_5end | |||
|description=CAGE_peak_1_at_Rasgrf1_5end | |||
|id=chr9:89804729..89804762,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.98e-10!23;CL:0000337!1.98e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.90e-12,23;CL:0000337,6.90e-12,23;CL:0000540,9.07e-07,33;CL:0000047,9.07e-07,33;CL:0000031,9.07e-07,33;CL:0000404,9.07e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.01e-19!63;UBERON:0001049!7.26e-19!52;UBERON:0005068!7.26e-19!52;UBERON:0006241!7.26e-19!52;UBERON:0007135!7.26e-19!52;UBERON:0000955!5.13e-18!50;UBERON:0006238!5.13e-18!50;UBERON:0001017!1.33e-17!73;UBERON:0005743!1.33e-17!73;UBERON:0004121!1.63e-17!102;UBERON:0000924!1.63e-17!102;UBERON:0006601!1.63e-17!102;UBERON:0000073!2.52e-17!75;UBERON:0001016!2.52e-17!75;UBERON:0002616!2.62e-17!49;UBERON:0002346!9.51e-17!71;UBERON:0003075!9.51e-17!71;UBERON:0007284!9.51e-17!71;UBERON:0003056!4.92e-15!49;UBERON:0002020!2.01e-14!34;UBERON:0003080!4.80e-14!40;UBERON:0002780!2.37e-13!39;UBERON:0001890!2.37e-13!39;UBERON:0006240!2.37e-13!39;UBERON:0002791!1.01e-11!29;UBERON:0003528!1.01e-11!29;UBERON:0001893!1.01e-11!29;UBERON:0000956!3.44e-08!21;UBERON:0001869!3.44e-08!21;UBERON:0000203!3.44e-08!21;UBERON:0002021!1.82e-07!10;UBERON:0000411!1.82e-07!10;UBERON:0001950!1.82e-07!10;UBERON:0007811!2.46e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.22e-23,54;UBERON:0001049,9.07e-22,52;UBERON:0005068,9.07e-22,52;UBERON:0006241,9.07e-22,52;UBERON:0007135,9.07e-22,52;UBERON:0001017,1.89e-21,73;UBERON:0001016,2.80e-20,75;UBERON:0002346,1.78e-19,64;UBERON:0003075,1.78e-19,64;UBERON:0007284,1.78e-19,64;UBERON:0000955,2.74e-18,47;UBERON:0006238,2.74e-18,47;UBERON:0002020,1.46e-17,34;UBERON:0010371,1.76e-17,73;UBERON:0002616,1.90e-17,46;UBERON:0004121,3.24e-17,95;UBERON:0000924,3.24e-17,95;UBERON:0006601,3.24e-17,95;UBERON:0003080,8.29e-16,40;UBERON:0003056,1.76e-15,49;UBERON:0002780,5.82e-15,39;UBERON:0001890,5.82e-15,39;UBERON:0006240,5.82e-15,39;UBERON:0003528,3.57e-14,29;UBERON:0002791,3.57e-14,29;UBERON:0001893,3.57e-14,29;UBERON:0010314,6.68e-11,92;UBERON:0000956,9.44e-10,21;UBERON:0001869,9.44e-10,21;UBERON:0000203,9.44e-10,21;UBERON:0002021,5.56e-09,10;UBERON:0000411,5.56e-09,10;UBERON:0001950,5.56e-09,10;UBERON:0002619,1.94e-07,17 | |||
|phase1_expression=4.32401887182944,0,0,0,0,0.33575854382378,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.7152165005496,0,0,0.159992422793407,0,0,0,0,0.190023419456374,1.00812051903972,0.443461021310609,0,0,0,0,0,0,0,0,0,0,0,0,0,0.101376931219515,0,0,0.218025156380447,0,0,1.25987779462826,1.43752564364972,0,0,0,0,0,0,2.83243045203437,3.70293685490423,3.1691570175309,0.338844532069132,0,0.449949858640699,0,0,1.19840044207362,1.53687322128622,4.97710139080693,4.05017814995072,6.52007380189284,55.7019419587417,60.0762431388389,2.20483438586917,1.72521847832825,0.919218786610021,179.488886029004,231.11408193419,232.099471750184,1.71452174049252,3.20206752608434,2.08365348222704,219.996203213088,180.084035210138,186.261064039932,40.6587447953661,43.2809909629273,12.3023634244698,0.37863096666592,0.302286240427142,0.289864488701678,0,0,0.539703191637817,0,0,7.44355426698285,0,0,0,8.87313544593087,0,0,0,0,0,0,6.73684890342454,0,40.3762618256323,0,0.608930956624282,0,0.150722640552623,0.823120949949934,4.77533047052767,0.741584903203122,0.722996784599558,0,0,0,0,0,122.96793474485,110.378414490691,1.78819938646014,0.838705871541442,0,0.254140454146129,365.938532065982,279.075367719362,25.5078334789115,239.356088904765,170.817925496661,259.319479610331,231.842764923826,0.101839363850316,8.45967400148633,49.0282151361329,8.62811609134543,0.260240885925407,0.689706313300419,0.720248519221397,1.80845781402858,1.15662048557257,1.2811372028485,1.40552586839593,19.9201595469042,0.215567992932842,0,0.351902248327898,0.43839146485515,1.11218899690239,1.0447564995665,0.205782136407943,0.199034266818493,0,0.257347907114715,0,0.207125772535502,0.234526059981096,0,0.473489471170421,0.590292695242212,0,0,0,0,0.16455984991348,0,0,0,0,0,425.206275996665,2.77842453424068,4.62586296177317,1.05780226665418,0.213288250535234,0,0,1.00841762311671,0.22237804384487,0.190225626112559,0,0,0.502670417600539,0.198956472041151,0.38992817423824,0,0,0,0.569003702859245,0.342745537829186,0,0,0.193952487167626,0.140271639780637,0.0632365371242573,0,0.156998727841375,0,0,0,0,0,0,0,0,0.287696137450811,0.324270453550071,0,0,0,0.312037673114561,0.252578877947112,0,0,2.40179147216586,0.189491411770485,0.488894929326078,1.01847051465113,0.938760993154008,0.502518772325447,0.238043640886014,0.585400943573396,1.10344600874334,1.55025282754142,0.637819074629948,0.491589944147214,0.345369963731791,0.289298117163023,0,9.24639662491806,0,0.551873492609465,336.6745872044,268.180338922961,0,0,0,0,0,0,0,0,0,0.292255857911312,0.395287777946524,271.195191060005,1.41940085208269,0.712262414669021,0.488660878060728,2.47455184458803,0,2.42780636154981,3.02323556964751,3.20628635585027,3.54362271456927,3.07435147943927,5.42699415653264,3.99887102425256,4.63446591900138,2.21225730555071,0,1.03135543248187,39.4909942674394,0.18006109403131,0.258717367565509,0.643011105094777,2.48276327099183,1.24858172321449,1.31639216481697,3.65357938937519,0.23467170806371,4.2366414172764,0.661585194164886,1.97863503529776,0.968786560175433,0.482503399425247,0.119372344003136,0.492422699235184,0.291480836629851,283.515286774069,0.170870880797853,0.619160603889667,0.370389054739423,0,0,0,3.0596117398894,4.61839792668071,4.14599921413271,0,0.158167996790568,0.203319467126849,0.648032044930808,0.209088296014469,0.218362563746178,0.404593039154462,0.330613822901344,0.26175594198403,0,0,0,0,0,0.583353565032143,0.129159823477731,0.675824501963113,0.234714477291508,0,0,0,1.15212002503146,0,0,0,0,0,0,0,0,0,0,0.100826185136841,0.0974578807397524,0,0.350630706544707,0.226730383615211,0.665957860122194,0,0.335769232728157,1.54551675225752,1.50145980360946,6.77661009788881,2.78678892802786,2.00628841614145,110.126609310328,117.38293530933,118.589371281955,97.4407543888709,180.176702699679,215.287260756065,156.605220053779,186.883299338052,180.803821184698,203.479802518465,0,0,1.02440163452481,1.21553358534147,0.419226325255965,3.12533964365024,3.33370091702423,2.88449080134452,2.88827288632634,2.52697211763797,3.29523089857312,2.26351609663291,2.43467919421694,2.62503124859964,2.5845961030026,2.85776214769844,3.82418275618023,1.92909220463705,2.47251540481984,1.76638704161277,1.37147700954166,1.95223386775271,2.86123427936785,3.48831399917588,1.97629698872194,2.70766745253365,2.37806364734604,3.94604567156764,2.17286582153379,2.80571135828869,2.13543032623513,2.26560309463796,3.27384834535751,2.94379998253335,2.70069255373598,3.74715866906919,2.10538447600868,1.71896843238639,2.86932498103265,1.76473135295612,3.47801753430632 | |||
|short_description=p1@Rasgrf1 | |||
}} |
Revision as of 18:57, 14 September 2013
Short description: | p1@Rasgrf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rasgrf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 116bp_to_ENSMUST00000034909, ENSMUST00000034912, NM_001039655, NM_011245, uc009qzr.1, uc009qzs.1, uc009qzt.1_5end |
EntrezGene: | Rasgrf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.90e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.90e-12 | 23 |
neuron | 9.07e-07 | 33 |
neuronal stem cell | 9.07e-07 | 33 |
neuroblast | 9.07e-07 | 33 |
electrically signaling cell | 9.07e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.22e-23 | 54 |
neural tube | 9.07e-22 | 52 |
neural rod | 9.07e-22 | 52 |
future spinal cord | 9.07e-22 | 52 |
neural keel | 9.07e-22 | 52 |
central nervous system | 1.89e-21 | 73 |
nervous system | 2.80e-20 | 75 |
neurectoderm | 1.78e-19 | 64 |
neural plate | 1.78e-19 | 64 |
presumptive neural plate | 1.78e-19 | 64 |
brain | 2.74e-18 | 47 |
future brain | 2.74e-18 | 47 |
gray matter | 1.46e-17 | 34 |
ecto-epithelium | 1.76e-17 | 73 |
regional part of brain | 1.90e-17 | 46 |
ectoderm-derived structure | 3.24e-17 | 95 |
ectoderm | 3.24e-17 | 95 |
presumptive ectoderm | 3.24e-17 | 95 |
anterior neural tube | 8.29e-16 | 40 |
pre-chordal neural plate | 1.76e-15 | 49 |
regional part of forebrain | 5.82e-15 | 39 |
forebrain | 5.82e-15 | 39 |
future forebrain | 5.82e-15 | 39 |
brain grey matter | 3.57e-14 | 29 |
regional part of telencephalon | 3.57e-14 | 29 |
telencephalon | 3.57e-14 | 29 |
structure with developmental contribution from neural crest | 6.68e-11 | 92 |
cerebral cortex | 9.44e-10 | 21 |
cerebral hemisphere | 9.44e-10 | 21 |
pallium | 9.44e-10 | 21 |
occipital lobe | 5.56e-09 | 10 |
visual cortex | 5.56e-09 | 10 |
neocortex | 5.56e-09 | 10 |
regional part of cerebral cortex | 1.94e-07 | 17 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.