FFCP PHASE1:Mm9::chrX:147451769..147451792,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=237107|HGNC=|MCL_coexpression_id=1|UniProt=Q6PGG6|association_with_transcript=43bp_to_NM_001168600,uc009uov.2_5end|description=CAGE_peak_2_at_Gnl3l_5end|id=chrX:147451769..147451792,-|ontology_enrichment_celltype=CL:0000540!5.53e-14!33;CL:0000047!5.53e-14!33;CL:0000031!5.53e-14!33;CL:0000404!5.53e-14!33;CL:0000393!3.97e-12!39;CL:0000211!3.97e-12!39;CL:0000117!4.76e-11!23;CL:0000337!4.76e-11!23;CL:0000221!2.54e-07!44;CL:0000133!2.54e-07!44;CL:0002319!2.63e-07!43|ontology_enrichment_celltype_v019_2=CL:0000540,5.53e-14,33;CL:0000047,5.53e-14,33;CL:0000031,5.53e-14,33;CL:0000404,5.53e-14,33;CL:0000393,3.97e-12,39;CL:0000211,3.97e-12,39;CL:0000117,4.76e-11,23;CL:0000337,4.76e-11,23;CL:0000221,2.54e-07,44;CL:0000133,2.54e-07,44;CL:0002319,2.63e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.16e-24!73;UBERON:0005743!1.16e-24!73;UBERON:0002346!2.49e-24!71;UBERON:0003075!2.49e-24!71;UBERON:0007284!2.49e-24!71;UBERON:0004121!2.82e-24!102;UBERON:0000924!2.82e-24!102;UBERON:0006601!2.82e-24!102;UBERON:0000073!5.03e-23!75;UBERON:0001016!5.03e-23!75;UBERON:0007811!3.25e-21!86;UBERON:0000153!3.44e-21!94;UBERON:0000033!1.54e-20!63;UBERON:0001049!1.67e-20!52;UBERON:0005068!1.67e-20!52;UBERON:0006241!1.67e-20!52;UBERON:0007135!1.67e-20!52;UBERON:0000955!6.44e-20!50;UBERON:0006238!6.44e-20!50;UBERON:0002616!2.31e-19!49;UBERON:0003056!9.69e-19!49;UBERON:0003080!2.00e-17!40;UBERON:0002780!9.61e-17!39;UBERON:0001890!9.61e-17!39;UBERON:0006240!9.61e-17!39;UBERON:0002020!1.49e-15!34;UBERON:0002791!3.43e-13!29;UBERON:0003528!3.43e-13!29;UBERON:0001893!3.43e-13!29;UBERON:0000956!9.66e-09!21;UBERON:0001869!9.66e-09!21;UBERON:0000203!9.66e-09!21;UBERON:0002619!3.70e-08!17;UBERON:0000475!1.00e-07!200;UBERON:0002021!1.84e-07!10;UBERON:0000411!1.84e-07!10;UBERON:0001950!1.84e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-24,73;UBERON:0002346,3.97e-23,64;UBERON:0003075,3.97e-23,64;UBERON:0007284,3.97e-23,64;UBERON:0001016,5.03e-23,75;UBERON:0004121,1.06e-22,95;UBERON:0000924,1.06e-22,95;UBERON:0006601,1.06e-22,95;UBERON:0000073,6.41e-22,54;UBERON:0010371,1.10e-21,73;UBERON:0001049,1.67e-20,52;UBERON:0005068,1.67e-20,52;UBERON:0006241,1.67e-20,52;UBERON:0007135,1.67e-20,52;UBERON:0003056,9.69e-19,49;UBERON:0000955,5.28e-18,47;UBERON:0006238,5.28e-18,47;UBERON:0002616,1.84e-17,46;UBERON:0003080,2.00e-17,40;UBERON:0010314,9.53e-17,92;UBERON:0002780,9.61e-17,39;UBERON:0001890,9.61e-17,39;UBERON:0006240,9.61e-17,39;UBERON:0002020,1.49e-15,34;UBERON:0003528,3.43e-13,29;UBERON:0002791,3.43e-13,29;UBERON:0001893,3.43e-13,29;UBERON:0000956,9.66e-09,21;UBERON:0001869,9.66e-09,21;UBERON:0000203,9.66e-09,21;UBERON:0002619,3.70e-08,17;UBERON:0002021,1.84e-07,10;UBERON:0000411,1.84e-07,10;UBERON:0001950,1.84e-07,10|phase1_expression=7.20669811971573,2.44282785347553,1.81999695755814,2.11724947914781,2.50447864973174,3.18970616632591,4.43864017131499,15.8821687833139,31.25509631767,39.0887758957729,27.3948749160808,16.2735204350486,15.4080656938085,10.5778686926987,7.32841475994458,6.47920855647443,4.19737126876888,6.78243655520211,7.95263714913285,2.97072756258621,8.92954546586233,11.6170412905036,11.7539905112521,4.47978783821539,4.35877634027623,4.01962374880514,1.7230479846363,4.09395342103189,2.66032787238923,2.77233142735924,2.88249663851896,4.44521471421742,3.07532393792285,0,3.75507105676657,2.65975432573588,3.47087905646027,1.67412652294763,2.3440060335714,2.61761871986899,4.70585190424811,0,3.39857247121808,6.29484089877886,5.87986201073184,5.68994931701213,3.12956537739216,3.70642765846759,4.39372365468944,7.77719596297134,5.17949760013841,5.75010257459886,13.7581736967344,11.6057942721815,16.4685961579807,10.0331180054019,5.15760191889762,7.73508138416164,21.4455448511174,25.9205579843296,26.6209189472595,2.71075625655306,1.77858959222228,0,0,1.4209602298922,1.19840044207362,1.15265491596466,9.12468588314603,9.85543349821342,6.30974884054146,12.5686433137674,16.1234034894678,11.6366259254206,11.4056110511701,12.8690630125403,25.3266526298594,31.5387725070414,34.715076515911,26.9048026969595,34.9482798561205,27.0874952689515,27.080750903134,28.138130501584,29.0316670775939,20.9186295686304,27.7624777558251,19.7583412574819,3.86203585999239,4.91215140694106,9.27566363845369,2.58127163094416,1.3599426674155,4.31762553310254,1.94932925234301,1.34408066129201,5.75822122540183,4.60161870960756,5.71529210126311,3.5333957451034,7.32385782838739,0,2.54805239706646,0,6.49473123033642,4.81383744402687,5.56076889516262,4.22480354960522,8.2860122767095,11.875371125186,9.54169297213747,9.43842982767638,6.6878494204257,9.04335843315735,10.7005723493491,6.91166252313215,3.70792451601561,2.89198713839823,6.19227386364912,5.50007289821191,5.07935492458905,7.27312879702833,7.45567044872489,16.6885054296582,15.7085030110091,4.08731288333746,6.58983184782562,6.59893004092748,4.06624726633807,34.1522657842996,29.7375391832107,21.7382029155255,32.678972196148,30.94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| ||
|EntrezGene=237107 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|UniProt=Q6PGG6 | |||
|association_with_transcript=43bp_to_NM_001168600,uc009uov.2_5end | |||
|description=CAGE_peak_2_at_Gnl3l_5end | |||
|id=chrX:147451769..147451792,- | |||
|ontology_enrichment_celltype=CL:0000540!5.53e-14!33;CL:0000047!5.53e-14!33;CL:0000031!5.53e-14!33;CL:0000404!5.53e-14!33;CL:0000393!3.97e-12!39;CL:0000211!3.97e-12!39;CL:0000117!4.76e-11!23;CL:0000337!4.76e-11!23;CL:0000221!2.54e-07!44;CL:0000133!2.54e-07!44;CL:0002319!2.63e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,5.53e-14,33;CL:0000047,5.53e-14,33;CL:0000031,5.53e-14,33;CL:0000404,5.53e-14,33;CL:0000393,3.97e-12,39;CL:0000211,3.97e-12,39;CL:0000117,4.76e-11,23;CL:0000337,4.76e-11,23;CL:0000221,2.54e-07,44;CL:0000133,2.54e-07,44;CL:0002319,2.63e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.16e-24!73;UBERON:0005743!1.16e-24!73;UBERON:0002346!2.49e-24!71;UBERON:0003075!2.49e-24!71;UBERON:0007284!2.49e-24!71;UBERON:0004121!2.82e-24!102;UBERON:0000924!2.82e-24!102;UBERON:0006601!2.82e-24!102;UBERON:0000073!5.03e-23!75;UBERON:0001016!5.03e-23!75;UBERON:0007811!3.25e-21!86;UBERON:0000153!3.44e-21!94;UBERON:0000033!1.54e-20!63;UBERON:0001049!1.67e-20!52;UBERON:0005068!1.67e-20!52;UBERON:0006241!1.67e-20!52;UBERON:0007135!1.67e-20!52;UBERON:0000955!6.44e-20!50;UBERON:0006238!6.44e-20!50;UBERON:0002616!2.31e-19!49;UBERON:0003056!9.69e-19!49;UBERON:0003080!2.00e-17!40;UBERON:0002780!9.61e-17!39;UBERON:0001890!9.61e-17!39;UBERON:0006240!9.61e-17!39;UBERON:0002020!1.49e-15!34;UBERON:0002791!3.43e-13!29;UBERON:0003528!3.43e-13!29;UBERON:0001893!3.43e-13!29;UBERON:0000956!9.66e-09!21;UBERON:0001869!9.66e-09!21;UBERON:0000203!9.66e-09!21;UBERON:0002619!3.70e-08!17;UBERON:0000475!1.00e-07!200;UBERON:0002021!1.84e-07!10;UBERON:0000411!1.84e-07!10;UBERON:0001950!1.84e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.16e-24,73;UBERON:0002346,3.97e-23,64;UBERON:0003075,3.97e-23,64;UBERON:0007284,3.97e-23,64;UBERON:0001016,5.03e-23,75;UBERON:0004121,1.06e-22,95;UBERON:0000924,1.06e-22,95;UBERON:0006601,1.06e-22,95;UBERON:0000073,6.41e-22,54;UBERON:0010371,1.10e-21,73;UBERON:0001049,1.67e-20,52;UBERON:0005068,1.67e-20,52;UBERON:0006241,1.67e-20,52;UBERON:0007135,1.67e-20,52;UBERON:0003056,9.69e-19,49;UBERON:0000955,5.28e-18,47;UBERON:0006238,5.28e-18,47;UBERON:0002616,1.84e-17,46;UBERON:0003080,2.00e-17,40;UBERON:0010314,9.53e-17,92;UBERON:0002780,9.61e-17,39;UBERON:0001890,9.61e-17,39;UBERON:0006240,9.61e-17,39;UBERON:0002020,1.49e-15,34;UBERON:0003528,3.43e-13,29;UBERON:0002791,3.43e-13,29;UBERON:0001893,3.43e-13,29;UBERON:0000956,9.66e-09,21;UBERON:0001869,9.66e-09,21;UBERON:0000203,9.66e-09,21;UBERON:0002619,3.70e-08,17;UBERON:0002021,1.84e-07,10;UBERON:0000411,1.84e-07,10;UBERON:0001950,1.84e-07,10 | |||
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| |||
|short_description=p2@Gnl3l | |||
}} |
Revision as of 19:29, 14 September 2013
Short description: | p2@Gnl3l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gnl3l_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 43bp_to_NM_001168600, uc009uov.2_5end |
EntrezGene: | Gnl3l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 5.53e-14 | 33 |
neuronal stem cell | 5.53e-14 | 33 |
neuroblast | 5.53e-14 | 33 |
electrically signaling cell | 5.53e-14 | 33 |
electrically responsive cell | 3.97e-12 | 39 |
electrically active cell | 3.97e-12 | 39 |
CNS neuron (sensu Vertebrata) | 4.76e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.76e-11 | 23 |
ectodermal cell | 2.54e-07 | 44 |
neurectodermal cell | 2.54e-07 | 44 |
neural cell | 2.63e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.16e-24 | 73 |
neurectoderm | 3.97e-23 | 64 |
neural plate | 3.97e-23 | 64 |
presumptive neural plate | 3.97e-23 | 64 |
nervous system | 5.03e-23 | 75 |
ectoderm-derived structure | 1.06e-22 | 95 |
ectoderm | 1.06e-22 | 95 |
presumptive ectoderm | 1.06e-22 | 95 |
regional part of nervous system | 6.41e-22 | 54 |
ecto-epithelium | 1.10e-21 | 73 |
neural tube | 1.67e-20 | 52 |
neural rod | 1.67e-20 | 52 |
future spinal cord | 1.67e-20 | 52 |
neural keel | 1.67e-20 | 52 |
pre-chordal neural plate | 9.69e-19 | 49 |
brain | 5.28e-18 | 47 |
future brain | 5.28e-18 | 47 |
regional part of brain | 1.84e-17 | 46 |
anterior neural tube | 2.00e-17 | 40 |
structure with developmental contribution from neural crest | 9.53e-17 | 92 |
regional part of forebrain | 9.61e-17 | 39 |
forebrain | 9.61e-17 | 39 |
future forebrain | 9.61e-17 | 39 |
gray matter | 1.49e-15 | 34 |
brain grey matter | 3.43e-13 | 29 |
regional part of telencephalon | 3.43e-13 | 29 |
telencephalon | 3.43e-13 | 29 |
cerebral cortex | 9.66e-09 | 21 |
cerebral hemisphere | 9.66e-09 | 21 |
pallium | 9.66e-09 | 21 |
regional part of cerebral cortex | 3.70e-08 | 17 |
occipital lobe | 1.84e-07 | 10 |
visual cortex | 1.84e-07 | 10 |
neocortex | 1.84e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.