FFCP PHASE1:Mm9::chrX:71070277..71070316,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=245469|HGNC=|MCL_coexpression_id=13|UniProt=Q9QY39,A2AFG3|association_with_transcript=0bp_to_ENSMUST00000002080,ENSMUST00000114438,NM_001029868,uc009tmt.1,uc009tmu.1_5end|description=CAGE_peak_1_at_Pdzd4_5end|id=chrX:71070277..71070316,-|ontology_enrichment_celltype=CL:0000117!1.51e-14!23;CL:0000337!1.51e-14!23;CL:0000540!1.61e-14!33;CL:0000047!1.61e-14!33;CL:0000031!1.61e-14!33;CL:0000404!1.61e-14!33;CL:0000393!9.14e-13!39;CL:0000211!9.14e-13!39;CL:0000221!6.66e-12!44;CL:0000133!6.66e-12!44;CL:0002319!8.42e-12!43;CL:0000055!2.93e-10!50|ontology_enrichment_celltype_v019_2=CL:0000117,6.55e-15,23;CL:0000337,6.55e-15,23;CL:0000540,6.98e-15,33;CL:0000047,6.98e-15,33;CL:0000031,6.98e-15,33;CL:0000404,6.98e-15,33;CL:0000393,4.45e-13,39;CL:0000211,4.45e-13,39;CL:0000221,2.37e-12,44;CL:0000133,2.37e-12,44;CL:0002319,3.00e-12,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!9.73e-29!73;UBERON:0005743!9.73e-29!73;UBERON:0000073!9.76e-28!75;UBERON:0001016!9.76e-28!75;UBERON:0004121!5.99e-26!102;UBERON:0000924!5.99e-26!102;UBERON:0006601!5.99e-26!102;UBERON:0002346!4.54e-25!71;UBERON:0003075!4.54e-25!71;UBERON:0007284!4.54e-25!71;UBERON:0001049!2.91e-24!52;UBERON:0005068!2.91e-24!52;UBERON:0006241!2.91e-24!52;UBERON:0007135!2.91e-24!52;UBERON:0000033!5.82e-24!63;UBERON:0000955!7.42e-23!50;UBERON:0006238!7.42e-23!50;UBERON:0002616!2.36e-22!49;UBERON:0003056!3.07e-21!49;UBERON:0003080!2.28e-19!40;UBERON:0002020!2.38e-19!34;UBERON:0002780!7.27e-19!39;UBERON:0001890!7.27e-19!39;UBERON:0006240!7.27e-19!39;UBERON:0000153!4.89e-17!94;UBERON:0002791!2.00e-16!29;UBERON:0003528!2.00e-16!29;UBERON:0001893!2.00e-16!29;UBERON:0007811!3.17e-16!86;UBERON:0000956!1.60e-11!21;UBERON:0001869!1.60e-11!21;UBERON:0000203!1.60e-11!21;UBERON:0002619!2.28e-09!17;UBERON:0002021!1.85e-07!10;UBERON:0000411!1.85e-07!10;UBERON:0001950!1.85e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-29,73;UBERON:0001016,1.13e-28,75;UBERON:0002346,1.67e-27,64;UBERON:0003075,1.67e-27,64;UBERON:0007284,1.67e-27,64;UBERON:0004121,3.05e-27,95;UBERON:0000924,3.05e-27,95;UBERON:0006601,3.05e-27,95;UBERON:0000073,3.78e-26,54;UBERON:0010371,2.86e-25,73;UBERON:0001049,6.75e-25,52;UBERON:0005068,6.75e-25,52;UBERON:0006241,6.75e-25,52;UBERON:0007135,6.75e-25,52;UBERON:0003056,8.66e-22,49;UBERON:0000955,9.59e-22,47;UBERON:0006238,9.59e-22,47;UBERON:0002616,3.09e-21,46;UBERON:0003080,7.27e-20,40;UBERON:0002020,7.57e-20,34;UBERON:0002780,2.39e-19,39;UBERON:0001890,2.39e-19,39;UBERON:0006240,2.39e-19,39;UBERON:0003528,7.69e-17,29;UBERON:0002791,7.69e-17,29;UBERON:0001893,7.69e-17,29;UBERON:0010314,2.34e-16,92;UBERON:0000956,8.42e-12,21;UBERON:0001869,8.42e-12,21;UBERON:0000203,8.42e-12,21;UBERON:0002619,1.38e-09,17;UBERON:0002021,1.27e-07,10;UBERON:0000411,1.27e-07,10;UBERON:0001950,1.27e-07,10|phase1_expression=8.0074423552397,0,0,0,0,0.16787927191189,0.934450562382103,0.258246646883153,0.281577444303333,0.936258105287974,0.171217968225505,0.0797721589953364,0.684802919724823,0.611942816932982,0.333109761815663,0.607425802169478,0,0.473193248037357,0.685572168028694,1.27316895539409,8.24919914465377,2.18440092641948,1.56719873483361,0,0,0.57423196411502,0,0.215471232685889,0,0,0.221730510655305,0,1.23012957516914,0,0,0,0.204169356262369,0,0,0,0.588231488031014,0,0,5.91715044485213,4.46058497365864,3.30384153891027,3.12956537739216,3.2703773457067,2.85592037554813,2.72201858703997,2.37976916763116,0,0.167782606057736,0.725362142011344,0.672187598284928,1.02903774414379,2.29226751951005,1.54701627683233,77.6895209700856,87.8125025591575,70.9891171926921,4.74382344896785,1.77858959222228,0.449949858640699,0,0,7.49000276296012,11.9107674649682,41.683224148008,44.0119358961312,46.9024663813582,38.8485338789173,36.2224407160646,52.0585896663555,59.2325010892701,43.203282970671,35.2370819198044,35.6247673257674,32.8717981168361,83.7477927086731,92.676982969241,68.7605649134923,24.5681039121215,37.1423322620909,35.6019917319968,42.4265163082082,40.5759290277443,64.494208255554,1.06016670666458,2.11600368298999,2.6087803983151,0.860423876981386,0,0,0.649776417447669,0,2.10666630197628,2.04516387093669,3.11743205523443,0.70667914902068,6.4787973097273,2.56652954828636,15.2883143823987,21.3320010945999,0.216491041011214,1.52015919285059,0,1.37020655662872,0.776813650941515,2.82040064223167,3.64319186208885,4.26251669636998,2.30615497256059,3.3158980921577,2.70454026412121,1.75933227861546,0.494389935468748,1.01219549843938,1.76922110389975,1.94120219936891,1.54589062922275,1.45462575940567,0,26.9358333250623,29.3225389538837,0,0.958520996047362,0,0.889491589511453,29.2091746839404,48.952564501593,96.1255793663413,35.6339856394167,59.8374170152973,29.7136903720171,46.5632425004464,6.31404055871961,1.49288364732112,0,3.15662783829711,5.72529949035896,6.66716102857071,6.84236093260327,10.0972227949929,10.9538763633638,13.9643955110486,13.6804517857204,10.3481348295606,4.95806383745537,8.1315614472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| ||
|EntrezGene=245469 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|UniProt=Q9QY39,A2AFG3 | |||
|association_with_transcript=0bp_to_ENSMUST00000002080,ENSMUST00000114438,NM_001029868,uc009tmt.1,uc009tmu.1_5end | |||
|description=CAGE_peak_1_at_Pdzd4_5end | |||
|id=chrX:71070277..71070316,- | |||
|ontology_enrichment_celltype=CL:0000117!1.51e-14!23;CL:0000337!1.51e-14!23;CL:0000540!1.61e-14!33;CL:0000047!1.61e-14!33;CL:0000031!1.61e-14!33;CL:0000404!1.61e-14!33;CL:0000393!9.14e-13!39;CL:0000211!9.14e-13!39;CL:0000221!6.66e-12!44;CL:0000133!6.66e-12!44;CL:0002319!8.42e-12!43;CL:0000055!2.93e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.55e-15,23;CL:0000337,6.55e-15,23;CL:0000540,6.98e-15,33;CL:0000047,6.98e-15,33;CL:0000031,6.98e-15,33;CL:0000404,6.98e-15,33;CL:0000393,4.45e-13,39;CL:0000211,4.45e-13,39;CL:0000221,2.37e-12,44;CL:0000133,2.37e-12,44;CL:0002319,3.00e-12,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.73e-29!73;UBERON:0005743!9.73e-29!73;UBERON:0000073!9.76e-28!75;UBERON:0001016!9.76e-28!75;UBERON:0004121!5.99e-26!102;UBERON:0000924!5.99e-26!102;UBERON:0006601!5.99e-26!102;UBERON:0002346!4.54e-25!71;UBERON:0003075!4.54e-25!71;UBERON:0007284!4.54e-25!71;UBERON:0001049!2.91e-24!52;UBERON:0005068!2.91e-24!52;UBERON:0006241!2.91e-24!52;UBERON:0007135!2.91e-24!52;UBERON:0000033!5.82e-24!63;UBERON:0000955!7.42e-23!50;UBERON:0006238!7.42e-23!50;UBERON:0002616!2.36e-22!49;UBERON:0003056!3.07e-21!49;UBERON:0003080!2.28e-19!40;UBERON:0002020!2.38e-19!34;UBERON:0002780!7.27e-19!39;UBERON:0001890!7.27e-19!39;UBERON:0006240!7.27e-19!39;UBERON:0000153!4.89e-17!94;UBERON:0002791!2.00e-16!29;UBERON:0003528!2.00e-16!29;UBERON:0001893!2.00e-16!29;UBERON:0007811!3.17e-16!86;UBERON:0000956!1.60e-11!21;UBERON:0001869!1.60e-11!21;UBERON:0000203!1.60e-11!21;UBERON:0002619!2.28e-09!17;UBERON:0002021!1.85e-07!10;UBERON:0000411!1.85e-07!10;UBERON:0001950!1.85e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.04e-29,73;UBERON:0001016,1.13e-28,75;UBERON:0002346,1.67e-27,64;UBERON:0003075,1.67e-27,64;UBERON:0007284,1.67e-27,64;UBERON:0004121,3.05e-27,95;UBERON:0000924,3.05e-27,95;UBERON:0006601,3.05e-27,95;UBERON:0000073,3.78e-26,54;UBERON:0010371,2.86e-25,73;UBERON:0001049,6.75e-25,52;UBERON:0005068,6.75e-25,52;UBERON:0006241,6.75e-25,52;UBERON:0007135,6.75e-25,52;UBERON:0003056,8.66e-22,49;UBERON:0000955,9.59e-22,47;UBERON:0006238,9.59e-22,47;UBERON:0002616,3.09e-21,46;UBERON:0003080,7.27e-20,40;UBERON:0002020,7.57e-20,34;UBERON:0002780,2.39e-19,39;UBERON:0001890,2.39e-19,39;UBERON:0006240,2.39e-19,39;UBERON:0003528,7.69e-17,29;UBERON:0002791,7.69e-17,29;UBERON:0001893,7.69e-17,29;UBERON:0010314,2.34e-16,92;UBERON:0000956,8.42e-12,21;UBERON:0001869,8.42e-12,21;UBERON:0000203,8.42e-12,21;UBERON:0002619,1.38e-09,17;UBERON:0002021,1.27e-07,10;UBERON:0000411,1.27e-07,10;UBERON:0001950,1.27e-07,10 | |||
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| |||
|short_description=p1@Pdzd4 | |||
}} |
Revision as of 20:04, 14 September 2013
Short description: | p1@Pdzd4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pdzd4_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 0bp_to_ENSMUST00000002080, ENSMUST00000114438, NM_001029868, uc009tmt.1, uc009tmu.1_5end |
EntrezGene: | Pdzd4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.55e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.55e-15 | 23 |
neuron | 6.98e-15 | 33 |
neuronal stem cell | 6.98e-15 | 33 |
neuroblast | 6.98e-15 | 33 |
electrically signaling cell | 6.98e-15 | 33 |
electrically responsive cell | 4.45e-13 | 39 |
electrically active cell | 4.45e-13 | 39 |
ectodermal cell | 2.37e-12 | 44 |
neurectodermal cell | 2.37e-12 | 44 |
neural cell | 3.00e-12 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.04e-29 | 73 |
nervous system | 1.13e-28 | 75 |
neurectoderm | 1.67e-27 | 64 |
neural plate | 1.67e-27 | 64 |
presumptive neural plate | 1.67e-27 | 64 |
ectoderm-derived structure | 3.05e-27 | 95 |
ectoderm | 3.05e-27 | 95 |
presumptive ectoderm | 3.05e-27 | 95 |
regional part of nervous system | 3.78e-26 | 54 |
ecto-epithelium | 2.86e-25 | 73 |
neural tube | 6.75e-25 | 52 |
neural rod | 6.75e-25 | 52 |
future spinal cord | 6.75e-25 | 52 |
neural keel | 6.75e-25 | 52 |
pre-chordal neural plate | 8.66e-22 | 49 |
brain | 9.59e-22 | 47 |
future brain | 9.59e-22 | 47 |
regional part of brain | 3.09e-21 | 46 |
anterior neural tube | 7.27e-20 | 40 |
gray matter | 7.57e-20 | 34 |
regional part of forebrain | 2.39e-19 | 39 |
forebrain | 2.39e-19 | 39 |
future forebrain | 2.39e-19 | 39 |
brain grey matter | 7.69e-17 | 29 |
regional part of telencephalon | 7.69e-17 | 29 |
telencephalon | 7.69e-17 | 29 |
structure with developmental contribution from neural crest | 2.34e-16 | 92 |
cerebral cortex | 8.42e-12 | 21 |
cerebral hemisphere | 8.42e-12 | 21 |
pallium | 8.42e-12 | 21 |
regional part of cerebral cortex | 1.38e-09 | 17 |
occipital lobe | 1.27e-07 | 10 |
visual cortex | 1.27e-07 | 10 |
neocortex | 1.27e-07 | 10 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.