MCL coexpression mm9:765: Difference between revisions
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{{MCL_coexpression_mm9 | {{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=-0.00747369524860643,-0.0523775221854545,-0.0776464963902867,-0.103296924977593,-0.069069894671502,-0.0733707059661016,-0.0333948797104838,0.280574478195345,1.23571316365661,1.2177501247267,0.684938755379209,0.636051581033037,0.144209953082441,0.203537097889116,0.173264196978547,0.157509320406639,0.0434385749645018,0.320134922194288,0.346567751488984,0.269206362643371,0.0983501551825071,0.399206542431342,0.417071647568684,0.148352240465731,0.14506536209947,-0.100362603715777,-0.10340435663128,-0.090268751597213,-0.032310989591851,-0.00516207190283881,0.0420818920835102,-0.192420558236586,-0.216145658737997,-0.0798620268481005,-0.123714640016075,-0.146882362817872,-0.0768778962630285,0.379847834452713,0.327690361596448,0.24227393932497,0.450744065645577,0.398788984296272,0.272582728086304,-0.0346990875164578,-0.03488424093536,-0.0769090794202469,-0.139339599663675,-0.171053583137379,-0.158557987636123,-0.154413027449806,-0.0958440288956903,-0.150781497084728,0.484599015146557,0.424138886740399,0.398071746558202,0.102570511141509,-0.0216711551046888,0.0845297607528372,-0.15387003786907,-0.0988918166819295,-0.152947245811872,-0.162603210797052,-0.185445688921532,0.177968746239149,0.231919459487809,0.156587212333055,0.133562044702431,0.028252682104415,-0.145604918850651,-0.137159081516178,-0.157862857089126,-0.0733568953050391,-0.0546072836173444,-0.145090032024454,-0.123425710827457,-0.101923835612096,-0.0961900552931561,-0.0491012962016161,-0.0437972983347477,-0.154274282473901,-0.102320891672079,-0.136287497205394,-0.0639672688352644,-0.0173494643394283,-0.0183800625007514,-0.0471778622559198,-0.0359983719616926,-0.106963148403097,0.0761283022365149,-0.08468864437865,0.538233603639154,0.143360046012233,-0.0919922684563926,-0.0903056818167868,-0.0911075422935327,-0.0873612796965054,0.0918162433156783,-0.150730690891555,-0.126555924932751,-0.125592527349544,-0.0875340179619728,-0.154785011354514,-0.155035655982662,-0.115139372892619,-0.0530026062856367,-0.0631937035647705,-0.0591868119169666,0.0970401859003645,0.599978626840131,0.0909228082322016,-0.0572082264480983,-0.0322341067205784,0.0138341876109307,0.0429108884633282,0.00949994075363427,0.0182655968058506,0.293454126111482,0.184748777365506,0.253033771464681,0.0689820233652131,0.167575347397345,0.132866373649863,-0.0640786399116738,-0.0468020072065442,-0.0316327762099687,0.0950816518900306,0.741744792455619,0.517328553993946,0.650235755763254,-0.0290479147958489,-0.0355368030522153,-0.133878490065458,-0.0411897456505635,-0.0337058598475024,-0.0514072425570869,-0.0648872145765381,0.0097275126019791,0.178106885368083,0.101704679379248,-0.00717607866913528,-0.0156733585604433,-0.0373983354238463,-0.0338090556085871,0.009573152679668,0.00530409664028489,0.030681383141403,0.0108694570285669,-0.00601723927785908,-0.0868203068318635,-0.0526229843811572,-0.0310948438182696,0.0335045280874578,0.0728764547499683,0.112427171364538,0.0971067945509305,-0.0386426819209481,0.566586520122628,0.576410033719152,0.678798052602502,-0.0511361794264187,-0.0305076912918369,-0.0712577436959635,-0.0466689116623748,-0.0834164490337175,-0.0338440749732778,-0.0697390578319779,-0.0310300462615551,-0.0142647782750772,-0.0526121546051929,0.000666927269207368,0.034005491530033,0.0485456911047313,0.071667281655168,0.0706584261290324,-0.0497522709331199,-0.0778973158772724,0.0416166225832607,0.0322152421916812,-0.0372414553392832,-0.0577305814594105,0.00844728178998572,-0.0583128838669785,-0.0285330212756109,-0.0374108750659908,0.0686916056385742,-0.0372196648355433,-0.0346533588090486,-0.0201981366109671,-0.00893100021856258,0.00800043431658212,-0.00572421290605209,0.0342170678742545,-0.0403654824732141,-0.056252348260412,0.0104820229040606,-0.0603572757981437,0.0134769320265107,-0.0209740426883294,0.0328384735091743,0.0560808761393142,0.0522560415796778,0.098939435443946,0.0198550315197248,0.0709316500085982,0.072543197154973,0.0728370608353025,0.143765907908338,0.0857502362437258,0.0586980730144481,0.198789425689409,0.123788914214346,0.0673852191566894,0.117180955367287,0.0998773486003151,0.0266268018018522,-0.0266924836851273,0.00571948423945419,-0.0272596596252217,0.280269250794942,-0.0613541685874846,0.0241808822251831,-0.0434861473125999,-0.0150475815531093,0.0431850153316103,0.065463130640172,0.0921553680993295,0.0947339208352045,0.119382264716321,0.139857165201716,0.19861555023628,0.197783280378652,0.226725680314432,0.382836880817812,0.302184967551046,0.0465637004717331,0.0697484333460312,-0.0139489082230075,-0.0444322291870449,-0.142437040775982,0.0225105773564084,-0.0954788490467605,-0.127511383206261,-0.122481196059992,-0.147981013430021,-0.101876842414265,-0.101388235356345,-0.13429799824159,-0.111178787409675,-0.115719337973522,0.00901866100584357,0.0592172552991405,0.0421041038087294,0.0254711005554781,0.216610648711126,0.0720511646113433,-0.0670642477515943,-0.0736874797189048,-0.0154806745100622,0.00943750196638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cell secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0033366;protein localization in secretory granule;0.00143811976113516;19073!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00143811976113516;19073!GO:0033374;protein localization in T cell secretory granule;0.00143811976113516;19073!GO:0033365;protein localization in organelle;0.00143811976113516;19073!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00143811976113516;19073!GO:0033375;protease localization in T cell secretory granule;0.00143811976113516;19073!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033367;protein localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033364;mast cell secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0042629;mast cell granule;0.00143811976113516;19073!GO:0033368;protease localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033363;secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0033380;granzyme B localization in T cell secretory granule;0.00143811976113516;19073!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00143811976113516;19073!GO:0050709;negative regulation of protein secretion;0.00383456581097931;19073!GO:0050710;negative regulation of cytokine secretion;0.00383456581097931;19073!GO:0050707;regulation of cytokine secretion;0.00605391414152312;19073!GO:0050663;cytokine secretion;0.00690108397284551;19073!GO:0045185;maintenance of protein localization;0.00940902219581238;19073!GO:0051605;protein maturation via proteolysis;0.00940902219581238;19073!GO:0051604;protein maturation;0.00999937901019018;19073!GO:0016050;vesicle organization and biogenesis;0.0110381045952215;19073!GO:0051048;negative regulation of secretion;0.0110381045952215;19073!GO:0050708;regulation of protein secretion;0.0123811320450737;19073!GO:0051235;maintenance of localization;0.0127734838112938;19073!GO:0005164;tumor necrosis factor receptor binding;0.014268718486589;21950!GO:0032813;tumor necrosis factor receptor superfamily binding;0.014268718486589;21950!GO:0045184;establishment of protein localization;0.0176249390066471;19386,19073!GO:0008104;protein localization;0.0192594749502943;19386,19073!GO:0051649;establishment of cellular localization;0.0192594749502943;19386,19073!GO:0051641;cellular localization;0.0192594749502943;19386,19073!GO:0033036;macromolecule localization;0.0192594749502943;19386,19073!GO:0009306;protein secretion;0.0196914644386767;19073!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0216923192976312;19386!GO:0016859;cis-trans isomerase activity;0.0217256151948936;19386!GO:0051028;mRNA transport;0.0271176221182818;19386!GO:0050658;RNA transport;0.0271176221182818;19386!GO:0051236;establishment of RNA localization;0.0271176221182818;19386!GO:0050657;nucleic acid transport;0.0271176221182818;19386!GO:0006403;RNA localization;0.0271176221182818;19386!GO:0005643;nuclear pore;0.0271176221182818;19386!GO:0051046;regulation of secretion;0.0271176221182818;19073!GO:0065002;intracellular protein transport across a membrane;0.027333537098526;19386!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.027333537098526;19386!GO:0046930;pore complex;0.027333537098526;19386!GO:0044453;nuclear membrane part;0.0291457452728465;19386!GO:0031965;nuclear membrane;0.0294837957638816;19386!GO:0001503;ossification;0.0421947015982399;19073!GO:0031214;biomineral formation;0.0421947015982399;19073!GO:0001816;cytokine production;0.0435725434786286;19073!GO:0046849;bone remodeling;0.0444679453359891;19073!GO:0005515;protein binding;0.0449187407769357;19386,19073,21950!GO:0005635;nuclear envelope;0.0449187407769357;19386!GO:0048771;tissue 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| |||
|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0.0997657817140535,1.00045482496686,0.963422225139964,0.552457650664006,0.476295886826461,0,0.0699790221274244,0.124865908594952,0.0800761525331175,0,0.12997579452189,0.149632666139897,0.153628809860867,0.0354470656487682,0.25390173974212,0.348225829090201,0.120568945209029,0.0896964873768703,0,0,0,0,0,0,0,0,0,0,0,0,0.264124112013994,0.168287667867397,0,0.337751283747623,0.0304690220785149,0.0894176656829266,0,0,0,0,0,0,0,0,0,0.264561190163111,0.236880264493592,0.223284998180554,0.0169668865757489,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0317017435824471,0,0.334344752642282,0,0,0,0,0,0.0570741246689917,0,0,0,0,0,0,0,0,0,0,0.0469568706916304,0.24964188216007,0.0601091194109999,0,0,0,0,0,0.0301137443548433,0.174463933976285,0.0586534975690397,0,0,0,0.0892319521621696,0,0,0,0,0.546063393855665,0.3423842760398,0.399432095736709,0,0,0,0,0,0,0,0,0.0929458998347565,0.0978549673988937,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0240888927100961,0,0,0,0.381011483184416,0.34309338773475,0.514986871274194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0597943799295356,0,0.0510233793005545,0,0,0.076728683666374,0,0.0802151268900158,0,0,0.197388711530769,0.0652566657696677,0,0,0.137398724818722,0,0,0,0,0.136564059910207,0,0,0,0,0,0.0392393265413264,0.0774164737207147,0,0.086880916817156,0.209072578240206,0.152012874855143,0.128841727545421,0.110353348438991,0.399312438845857,0.319691257886324,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.13761880360807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655145700627541,0.463368629524805,0,0,0,0,0,0,0,0,0.143750852947046,0,0.164608181985266,0,0.055643654597214,0.0811673355566885,0.305323543600836,0.29580799910476,0.323375828709717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.119259559192106,0.0801664161057822,0.0811390825906054,0.0530480122014902,0.0424392903596726,0.0628511321465636,0.0512680919391904,0,0.0798802230592418,0.0616083799021044,0.0797788474440915,0.111388092060353,0.0611668977365523,0.091228504856109,0,0,0,0,0,0.796234903711059,0.107720914907388,0.0843504501108034,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0305868938606404,0.0156591491470049,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.000640441714053905,0.00569908482308,0,0,0,0.0100064782544562,0,0,0,0,0,0,0,0,0.0865703124974023,0.0830046395036668 | |||
|gostat_on_MCL_coexpression=GO:0033371;T cell secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0033366;protein localization in secretory granule;0.00143811976113516;19073!GO:0033377;maintenance of protein localization in T cell secretory granule;0.00143811976113516;19073!GO:0033374;protein localization in T cell secretory granule;0.00143811976113516;19073!GO:0033365;protein localization in organelle;0.00143811976113516;19073!GO:0033370;maintenance of protein localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033382;maintenance of granzyme B localization in T cell secretory granule;0.00143811976113516;19073!GO:0033375;protease localization in T cell secretory granule;0.00143811976113516;19073!GO:0033373;maintenance of protease localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033367;protein localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033364;mast cell secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0042629;mast cell granule;0.00143811976113516;19073!GO:0033368;protease localization in mast cell secretory granule;0.00143811976113516;19073!GO:0033363;secretory granule organization and biogenesis;0.00143811976113516;19073!GO:0033380;granzyme B localization in T cell secretory granule;0.00143811976113516;19073!GO:0033379;maintenance of protease localization in T cell secretory granule;0.00143811976113516;19073!GO:0050709;negative regulation of protein secretion;0.00383456581097931;19073!GO:0050710;negative regulation of cytokine secretion;0.00383456581097931;19073!GO:0050707;regulation of cytokine secretion;0.00605391414152312;19073!GO:0050663;cytokine secretion;0.00690108397284551;19073!GO:0045185;maintenance of protein localization;0.00940902219581238;19073!GO:0051605;protein maturation via proteolysis;0.00940902219581238;19073!GO:0051604;protein maturation;0.00999937901019018;19073!GO:0016050;vesicle organization and biogenesis;0.0110381045952215;19073!GO:0051048;negative regulation of secretion;0.0110381045952215;19073!GO:0050708;regulation of protein secretion;0.0123811320450737;19073!GO:0051235;maintenance of localization;0.0127734838112938;19073!GO:0005164;tumor necrosis factor receptor binding;0.014268718486589;21950!GO:0032813;tumor necrosis factor receptor superfamily binding;0.014268718486589;21950!GO:0045184;establishment of protein localization;0.0176249390066471;19386,19073!GO:0008104;protein localization;0.0192594749502943;19386,19073!GO:0051649;establishment of cellular localization;0.0192594749502943;19386,19073!GO:0051641;cellular localization;0.0192594749502943;19386,19073!GO:0033036;macromolecule localization;0.0192594749502943;19386,19073!GO:0009306;protein secretion;0.0196914644386767;19073!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.0216923192976312;19386!GO:0016859;cis-trans isomerase activity;0.0217256151948936;19386!GO:0051028;mRNA transport;0.0271176221182818;19386!GO:0050658;RNA transport;0.0271176221182818;19386!GO:0051236;establishment of RNA localization;0.0271176221182818;19386!GO:0050657;nucleic acid transport;0.0271176221182818;19386!GO:0006403;RNA localization;0.0271176221182818;19386!GO:0005643;nuclear pore;0.0271176221182818;19386!GO:0051046;regulation of secretion;0.0271176221182818;19073!GO:0065002;intracellular protein transport across a membrane;0.027333537098526;19386!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.027333537098526;19386!GO:0046930;pore complex;0.027333537098526;19386!GO:0044453;nuclear membrane part;0.0291457452728465;19386!GO:0031965;nuclear membrane;0.0294837957638816;19386!GO:0001503;ossification;0.0421947015982399;19073!GO:0031214;biomineral formation;0.0421947015982399;19073!GO:0001816;cytokine production;0.0435725434786286;19073!GO:0046849;bone remodeling;0.0444679453359891;19073!GO:0005515;protein binding;0.0449187407769357;19386,19073,21950!GO:0005635;nuclear envelope;0.0449187407769357;19386!GO:0048771;tissue remodeling;0.0493916889321265;19073! | |||
|ontology_enrichment_celltype=CL:0000988!1.19e-16!32;CL:0002032!1.19e-16!32;CL:0000037!1.19e-16!32;CL:0000566!1.19e-16!32;CL:0000837!1.19e-16!32;CL:0002031!2.12e-11!25;CL:0000838!6.08e-11!12;CL:0002320!3.34e-10!46;CL:0000134!3.34e-10!46;CL:0000738!5.72e-10!17;CL:0002087!5.72e-10!17;CL:0000084!5.72e-10!11;CL:0000827!5.72e-10!11;CL:0000542!7.90e-10!13;CL:0000051!7.90e-10!13;CL:0000049!2.98e-08!19;CL:0000219!3.62e-08!54;CL:0000791!5.71e-08!9;CL:0000789!5.71e-08!9;CL:0002420!5.71e-08!9;CL:0002419!5.71e-08!9;CL:0000790!5.71e-08!9;CL:0002242!2.37e-07!16;CL:0000624!4.65e-07!8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_uberon=UBERON:0002193!5.79e-18!48;UBERON:0002405!5.79e-18!48;UBERON:0002390!1.13e-15!45;UBERON:0003061!1.13e-15!45;UBERON:0000077!3.12e-13!35;UBERON:0004177!4.94e-11!29;UBERON:0005057!4.94e-11!29;UBERON:0002384!3.34e-10!46;UBERON:0003081!7.09e-10!87;UBERON:0002370!1.14e-09!23;UBERON:0000974!1.14e-09!23;UBERON:0004807!1.14e-09!23;UBERON:0005058!1.14e-09!23;UBERON:0003351!1.14e-09!23;UBERON:0009113!1.14e-09!23;UBERON:0003295!1.14e-09!23;UBERON:0009722!1.14e-09!23;UBERON:0005562!1.14e-09!23;UBERON:0007690!1.14e-09!23;UBERON:0000065!1.29e-09!41;UBERON:0001004!3.28e-09!42;UBERON:0006562!4.69e-09!24;UBERON:0003408!4.69e-09!24;UBERON:0001557!4.69e-09!24;UBERON:0001042!4.69e-09!24;UBERON:0008814!4.69e-09!24;UBERON:0009145!4.69e-09!24;UBERON:0000926!1.95e-08!120;UBERON:0004120!1.95e-08!120;UBERON:0006603!1.95e-08!120;UBERON:0000072!1.68e-07!27 | |||
}} |
Latest revision as of 15:51, 17 September 2013
Phase1 CAGE Peaks
Short description | |
---|---|
Mm9::chr10:57909488..57909491,+ | p3@Ranbp2 |
Mm9::chr10:61957572..61957584,- | p@chr10:61957572..61957584 - |
Mm9::chr10:61957587..61957611,- | p@chr10:61957587..61957611 - |
Mm9::chr10:61957621..61957632,- | p@chr10:61957621..61957632 - |
Mm9::chr10:61957717..61957729,- | p@chr10:61957717..61957729 - |
Mm9::chr10:61960605..61960621,- | p@chr10:61960605..61960621 - |
Mm9::chr10:61970485..61970512,- | p1@Srgn |
Mm9::chr17:57244824..57244844,+ | p1@Tnfsf9 |
Mm9::chr2:167877446..167877452,- | p@chr2:167877446..167877452 - |
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0033371 | T cell secretory granule organization and biogenesis | 0.00143811976113516 |
GO:0033366 | protein localization in secretory granule | 0.00143811976113516 |
GO:0033377 | maintenance of protein localization in T cell secretory granule | 0.00143811976113516 |
GO:0033374 | protein localization in T cell secretory granule | 0.00143811976113516 |
GO:0033365 | protein localization in organelle | 0.00143811976113516 |
GO:0033370 | maintenance of protein localization in mast cell secretory granule | 0.00143811976113516 |
GO:0033382 | maintenance of granzyme B localization in T cell secretory granule | 0.00143811976113516 |
GO:0033375 | protease localization in T cell secretory granule | 0.00143811976113516 |
GO:0033373 | maintenance of protease localization in mast cell secretory granule | 0.00143811976113516 |
GO:0033367 | protein localization in mast cell secretory granule | 0.00143811976113516 |
GO:0033364 | mast cell secretory granule organization and biogenesis | 0.00143811976113516 |
GO:0042629 | mast cell granule | 0.00143811976113516 |
GO:0033368 | protease localization in mast cell secretory granule | 0.00143811976113516 |
GO:0033363 | secretory granule organization and biogenesis | 0.00143811976113516 |
GO:0033380 | granzyme B localization in T cell secretory granule | 0.00143811976113516 |
GO:0033379 | maintenance of protease localization in T cell secretory granule | 0.00143811976113516 |
GO:0050709 | negative regulation of protein secretion | 0.00383456581097931 |
GO:0050710 | negative regulation of cytokine secretion | 0.00383456581097931 |
GO:0050707 | regulation of cytokine secretion | 0.00605391414152312 |
GO:0050663 | cytokine secretion | 0.00690108397284551 |
GO:0045185 | maintenance of protein localization | 0.00940902219581238 |
GO:0051605 | protein maturation via proteolysis | 0.00940902219581238 |
GO:0051604 | protein maturation | 0.00999937901019018 |
GO:0016050 | vesicle organization and biogenesis | 0.0110381045952215 |
GO:0051048 | negative regulation of secretion | 0.0110381045952215 |
GO:0050708 | regulation of protein secretion | 0.0123811320450737 |
GO:0051235 | maintenance of localization | 0.0127734838112938 |
GO:0005164 | tumor necrosis factor receptor binding | 0.014268718486589 |
GO:0032813 | tumor necrosis factor receptor superfamily binding | 0.014268718486589 |
GO:0045184 | establishment of protein localization | 0.0176249390066471 |
GO:0008104 | protein localization | 0.0192594749502943 |
GO:0051649 | establishment of cellular localization | 0.0192594749502943 |
GO:0051641 | cellular localization | 0.0192594749502943 |
GO:0033036 | macromolecule localization | 0.0192594749502943 |
GO:0009306 | protein secretion | 0.0196914644386767 |
GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | 0.0216923192976312 |
GO:0016859 | cis-trans isomerase activity | 0.0217256151948936 |
GO:0051028 | mRNA transport | 0.0271176221182818 |
GO:0050658 | RNA transport | 0.0271176221182818 |
GO:0051236 | establishment of RNA localization | 0.0271176221182818 |
GO:0050657 | nucleic acid transport | 0.0271176221182818 |
GO:0006403 | RNA localization | 0.0271176221182818 |
GO:0005643 | nuclear pore | 0.0271176221182818 |
GO:0051046 | regulation of secretion | 0.0271176221182818 |
GO:0065002 | intracellular protein transport across a membrane | 0.027333537098526 |
GO:0015931 | nucleobase, nucleoside, nucleotide and nucleic acid transport | 0.027333537098526 |
GO:0046930 | pore complex | 0.027333537098526 |
GO:0044453 | nuclear membrane part | 0.0291457452728465 |
GO:0031965 | nuclear membrane | 0.0294837957638816 |
GO:0001503 | ossification | 0.0421947015982399 |
GO:0031214 | biomineral formation | 0.0421947015982399 |
GO:0001816 | cytokine production | 0.0435725434786286 |
GO:0046849 | bone remodeling | 0.0444679453359891 |
GO:0005515 | protein binding | 0.0449187407769357 |
GO:0005635 | nuclear envelope | 0.0449187407769357 |
GO:0048771 | tissue remodeling | 0.0493916889321265 |
Relative expression of the co-expression cluster over median <br>Analyst:
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 1.19e-16 | 32 |
hematopoietic oligopotent progenitor cell | 1.19e-16 | 32 |
hematopoietic stem cell | 1.19e-16 | 32 |
angioblastic mesenchymal cell | 1.19e-16 | 32 |
hematopoietic multipotent progenitor cell | 1.19e-16 | 32 |
hematopoietic lineage restricted progenitor cell | 2.12e-11 | 25 |
lymphoid lineage restricted progenitor cell | 6.08e-11 | 12 |
connective tissue cell | 3.34e-10 | 46 |
mesenchymal cell | 3.34e-10 | 46 |
leukocyte | 5.72e-10 | 17 |
nongranular leukocyte | 5.72e-10 | 17 |
T cell | 5.72e-10 | 11 |
pro-T cell | 5.72e-10 | 11 |
lymphocyte | 7.90e-10 | 13 |
common lymphoid progenitor | 7.90e-10 | 13 |
common myeloid progenitor | 2.98e-08 | 19 |
motile cell | 3.62e-08 | 54 |
mature alpha-beta T cell | 5.71e-08 | 9 |
alpha-beta T cell | 5.71e-08 | 9 |
immature T cell | 5.71e-08 | 9 |
mature T cell | 5.71e-08 | 9 |
immature alpha-beta T cell | 5.71e-08 | 9 |
nucleate cell | 2.37e-07 | 16 |
CD4-positive, alpha-beta T cell | 4.65e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 5.79e-18 | 48 |
immune system | 5.79e-18 | 48 |
hematopoietic system | 1.13e-15 | 45 |
blood island | 1.13e-15 | 45 |
mixed endoderm/mesoderm-derived structure | 3.12e-13 | 35 |
hemopoietic organ | 4.94e-11 | 29 |
immune organ | 4.94e-11 | 29 |
connective tissue | 3.34e-10 | 46 |
lateral plate mesoderm | 7.09e-10 | 87 |
thymus | 1.14e-09 | 23 |
neck | 1.14e-09 | 23 |
respiratory system epithelium | 1.14e-09 | 23 |
hemolymphoid system gland | 1.14e-09 | 23 |
pharyngeal epithelium | 1.14e-09 | 23 |
thymic region | 1.14e-09 | 23 |
pharyngeal gland | 1.14e-09 | 23 |
entire pharyngeal arch endoderm | 1.14e-09 | 23 |
thymus primordium | 1.14e-09 | 23 |
early pharyngeal endoderm | 1.14e-09 | 23 |
respiratory tract | 1.29e-09 | 41 |
respiratory system | 3.28e-09 | 42 |
pharynx | 4.69e-09 | 24 |
gland of gut | 4.69e-09 | 24 |
upper respiratory tract | 4.69e-09 | 24 |
chordate pharynx | 4.69e-09 | 24 |
pharyngeal arch system | 4.69e-09 | 24 |
pharyngeal region of foregut | 4.69e-09 | 24 |
mesoderm | 1.95e-08 | 120 |
mesoderm-derived structure | 1.95e-08 | 120 |
presumptive mesoderm | 1.95e-08 | 120 |
segment of respiratory tract | 1.68e-07 | 27 |
TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 0.00972621 |
MA0004.1 | 1.02263 |
MA0006.1 | 0.238555 |
MA0007.1 | 0.38073 |
MA0009.1 | 0.82278 |
MA0014.1 | 0.0421798 |
MA0017.1 | 0.26239 |
MA0019.1 | 0.642876 |
MA0024.1 | 0.779446 |
MA0025.1 | 1.05446 |
MA0027.1 | 2.46647 |
MA0028.1 | 1.28203 |
MA0029.1 | 0.757957 |
MA0030.1 | 0.764448 |
MA0031.1 | 0.729293 |
MA0038.1 | 0.534262 |
MA0040.1 | 0.835181 |
MA0041.1 | 0.323687 |
MA0042.1 | 0.311486 |
MA0043.1 | 0.918718 |
MA0046.1 | 0.858391 |
MA0048.1 | 0.0824771 |
MA0050.1 | 0.431976 |
MA0051.1 | 0.542972 |
MA0052.1 | 0.84317 |
MA0055.1 | 0.0198867 |
MA0056.1 | 0 |
MA0057.1 | 0.549903 |
MA0058.1 | 1.49242 |
MA0059.1 | 0.849123 |
MA0060.1 | 0.169058 |
MA0061.1 | 0.194456 |
MA0063.1 | 0 |
MA0066.1 | 0.523573 |
MA0067.1 | 1.16502 |
MA0068.1 | 0.266547 |
MA0069.1 | 0.843506 |
MA0070.1 | 0.833895 |
MA0071.1 | 0.431174 |
MA0072.1 | 0.825495 |
MA0073.1 | 0.662187 |
MA0074.1 | 0.488775 |
MA0076.1 | 1.40007 |
MA0077.1 | 0.804033 |
MA0078.1 | 0.575205 |
MA0081.1 | 0.338098 |
MA0083.1 | 0.917931 |
MA0084.1 | 1.49188 |
MA0087.1 | 0.87515 |
MA0088.1 | 0.0492918 |
MA0089.1 | 0 |
MA0090.1 | 0.362551 |
MA0091.1 | 0.407455 |
MA0092.1 | 0.362847 |
MA0093.1 | 1.30984 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.477594 |
MA0101.1 | 0.324888 |
MA0103.1 | 0.272167 |
MA0105.1 | 0.35523 |
MA0106.1 | 0.582805 |
MA0107.1 | 0.266586 |
MA0108.2 | 0.665343 |
MA0109.1 | 0 |
MA0111.1 | 0.980871 |
MA0113.1 | 0.555251 |
MA0114.1 | 0.19245 |
MA0115.1 | 0.921497 |
MA0116.1 | 0.238371 |
MA0117.1 | 0.88947 |
MA0119.1 | 0.325434 |
MA0122.1 | 0.909168 |
MA0124.1 | 2.51361 |
MA0125.1 | 1.03833 |
MA0130.1 | 0 |
MA0131.1 | 0.638414 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 0.954884 |
MA0136.1 | 0.508047 |
MA0139.1 | 0.441109 |
MA0140.1 | 0.477483 |
MA0141.1 | 0.29014 |
MA0142.1 | 0.714976 |
MA0143.1 | 0.571221 |
MA0144.1 | 0.568165 |
MA0145.1 | 0.0543321 |
MA0146.1 | 0.0111657 |
MA0147.1 | 0.205697 |
MA0148.1 | 0.410398 |
MA0149.1 | 0.330018 |
MA0062.2 | 1.7688 |
MA0035.2 | 0.482026 |
MA0039.2 | 0.0156581 |
MA0138.2 | 1.52535 |
MA0002.2 | 0.447007 |
MA0137.2 | 0.783415 |
MA0104.2 | 0.476119 |
MA0047.2 | 0.533516 |
MA0112.2 | 0.0543294 |
MA0065.2 | 0.200864 |
MA0150.1 | 0.380623 |
MA0151.1 | 0 |
MA0152.1 | 0.53362 |
MA0153.1 | 0.971406 |
MA0154.1 | 0.0809407 |
MA0155.1 | 0.0631765 |
MA0156.1 | 1.39718 |
MA0157.1 | 0.683365 |
MA0158.1 | 0 |
MA0159.1 | 0.214506 |
MA0160.1 | 0.413266 |
MA0161.1 | 0 |
MA0162.1 | 0.0672805 |
MA0163.1 | 0.160428 |
MA0164.1 | 0.508398 |
MA0080.2 | 0.267388 |
MA0018.2 | 0.51781 |
MA0099.2 | 0.624421 |
MA0079.2 | 0.0340753 |
MA0102.2 | 1.5442 |
MA0258.1 | 0.180934 |
MA0259.1 | 0.196451 |
MA0442.1 | 0 |