FFCP PHASE1:Hg19::chr1:151162606..151162682,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6944 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11644 | |||
|TSSclassifier=strong | |||
|UniProt=A6PW55,Q15906 | |||
|association_with_transcript=0bp_to_ENST00000354473,ENST00000471423,ENST00000491094,ENST00000496809,NM_005997,uc001exe.1,uc001exf.1_5end | |||
|description=CAGE_peak_1_at_VPS72_5end | |||
|id=chr1:151162606..151162682,- | |||
|ontology_enrichment_celltype=CL:0000066!2.08e-16!254;CL:1000449!1.01e-07!16;CL:1000497!1.29e-07!18;CL:0002518!1.29e-07!18;CL:0000115!1.36e-07!35;CL:0002078!2.75e-07!44 | |||
|ontology_enrichment_celltype_v019=CL:1000449;1.56e-07;15!CL:1000497;2.13e-07;17!CL:0002518;2.13e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.51e-16,253;CL:0000115,7.56e-08,36;CL:0002078,1.56e-07,45;CL:1000449,1.64e-07,15;CL:1000497,2.14e-07,17;CL:0002518,2.14e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!8.60e-14!143;DOID:162!2.43e-13!235;DOID:14566!1.41e-12!239;DOID:305!2.92e-09!106;DOID:3095!2.35e-08!22;DOID:2994!2.35e-08!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;2.18e-08;22!DOID:2994;2.18e-08;22 | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,8.60e-14,143;DOID:162,2.43e-13,235;DOID:14566,1.41e-12,239;DOID:305,2.92e-09,106;DOID:3095,2.35e-08,22;DOID:2994,2.35e-08,22 | |||
|ontology_enrichment_uberon=UBERON:0000483!4.21e-10!309;UBERON:0000119!4.53e-10!312;UBERON:0000064!5.88e-10!219;UBERON:0000073!5.52e-09!94;UBERON:0001016!5.52e-09!94;UBERON:0000924!1.15e-08!173;UBERON:0006601!1.15e-08!173;UBERON:0000489!3.32e-08!32;UBERON:0004121!5.68e-08!169;UBERON:0000025!6.38e-08!194;UBERON:0002346!7.08e-08!90;UBERON:0000481!8.50e-08!347;UBERON:0004211!1.01e-07!16;UBERON:0001285!1.01e-07!16;UBERON:0007684!1.01e-07!16;UBERON:0003220!1.01e-07!16;UBERON:0004208!1.01e-07!16;UBERON:0005743!1.42e-07!86;UBERON:0002113!2.16e-07!27;UBERON:0003918!2.16e-07!27;UBERON:0005095!2.16e-07!27;UBERON:0007687!2.16e-07!27;UBERON:0005177!2.19e-07!107;UBERON:0001017!2.83e-07!82;UBERON:0000080!3.04e-07!18;UBERON:0002120!3.04e-07!18;UBERON:0004875!3.04e-07!18;UBERON:0005721!3.04e-07!18;UBERON:0005754!3.04e-07!18;UBERON:0007297!3.04e-07!18;UBERON:0006555!3.23e-07!17;UBERON:0005103!3.23e-07!17;UBERON:0000083!3.23e-07!17;UBERON:0009201!3.23e-07!17;UBERON:0004819!3.23e-07!17;UBERON:0006553!3.23e-07!17;UBERON:0003074!3.23e-07!17;UBERON:0003060!3.23e-07!17;UBERON:0003075!4.19e-07!86;UBERON:0007284!4.19e-07!86;UBERON:0000058!5.45e-07!26;UBERON:0004876!5.88e-07!20;UBERON:0000475!6.22e-07!365;UBERON:0004111!6.71e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;2.53e-08;30!UBERON:0001008;2.53e-08;30!UBERON:0000489;3.26e-08;29!UBERON:0006555;1.56e-07;15!UBERON:0004819;1.56e-07;15!UBERON:0001285;1.56e-07;15!UBERON:0007684;1.56e-07;15!UBERON:0002113;2.00e-07;24!UBERON:0011143;2.00e-07;24!UBERON:0000353;8.03e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000483,5.36e-10,306;UBERON:0000119,5.78e-10,309;UBERON:0001016,1.17e-08,89;UBERON:0002346,2.62e-08,86;UBERON:0004121,3.26e-08,171;UBERON:0000924,3.26e-08,171;UBERON:0006601,3.26e-08,171;UBERON:0000489,5.69e-08,31;UBERON:0000025,1.02e-07,192;UBERON:0004211,1.64e-07,15;UBERON:0009773,1.64e-07,15;UBERON:0001231,1.64e-07,15;UBERON:0001285,1.64e-07,15;UBERON:0007684,1.64e-07,15;UBERON:0004208,1.64e-07,15;UBERON:0003075,1.64e-07,82;UBERON:0007284,1.64e-07,82;UBERON:0005177,1.79e-07,101;UBERON:0011216,2.32e-07,223;UBERON:0001017,2.95e-07,81;UBERON:0002113,3.70e-07,26;UBERON:0003918,3.70e-07,26;UBERON:0011143,3.70e-07,26;UBERON:0005095,3.70e-07,26;UBERON:0007687,3.70e-07,26;UBERON:0010371,4.85e-07,104;UBERON:0006555,5.37e-07,16;UBERON:0004819,5.37e-07,16;UBERON:0001008,5.83e-07,48;UBERON:0000353,8.37e-07,15;UBERON:0006554,8.73e-07,47;UBERON:0004111,9.32e-07,240 | |||
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| |||
|short_description=p1@VPS72 | |||
}} |
Revision as of 20:48, 10 January 2014
Short description: | p1@VPS72 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_VPS72_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000354473, ENST00000471423, ENST00000491094, ENST00000496809, NM_005997, uc001exe.1, uc001exf.1_5end |
EntrezGene: | VPS72 |
HGNC: | 11644 |
UniProt: | A6PW55Q15906 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.51e-16 | 253 |
endothelial cell | 7.56e-08 | 36 |
meso-epithelial cell | 1.56e-07 | 45 |
epithelial cell of nephron | 1.64e-07 | 15 |
kidney cell | 2.14e-07 | 17 |
kidney epithelial cell | 2.14e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
epithelium | 5.36e-10 | 306 |
cell layer | 5.78e-10 | 309 |
nervous system | 1.17e-08 | 89 |
neurectoderm | 2.62e-08 | 86 |
ectoderm-derived structure | 3.26e-08 | 171 |
ectoderm | 3.26e-08 | 171 |
presumptive ectoderm | 3.26e-08 | 171 |
cavitated compound organ | 5.69e-08 | 31 |
tube | 1.02e-07 | 192 |
nephron epithelium | 1.64e-07 | 15 |
renal tubule | 1.64e-07 | 15 |
nephron tubule | 1.64e-07 | 15 |
nephron | 1.64e-07 | 15 |
uriniferous tubule | 1.64e-07 | 15 |
nephrogenic mesenchyme | 1.64e-07 | 15 |
neural plate | 1.64e-07 | 82 |
presumptive neural plate | 1.64e-07 | 82 |
trunk region element | 1.79e-07 | 101 |
organ system subdivision | 2.32e-07 | 223 |
central nervous system | 2.95e-07 | 81 |
kidney | 3.70e-07 | 26 |
kidney mesenchyme | 3.70e-07 | 26 |
upper urinary tract | 3.70e-07 | 26 |
kidney rudiment | 3.70e-07 | 26 |
kidney field | 3.70e-07 | 26 |
ecto-epithelium | 4.85e-07 | 104 |
excretory tube | 5.37e-07 | 16 |
kidney epithelium | 5.37e-07 | 16 |
renal system | 5.83e-07 | 48 |
parenchyma | 8.37e-07 | 15 |
urinary system structure | 8.73e-07 | 47 |
anatomical conduit | 9.32e-07 | 240 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 8.60e-14 | 143 |
cancer | 2.43e-13 | 235 |
disease of cellular proliferation | 1.41e-12 | 239 |
carcinoma | 2.92e-09 | 106 |
germ cell and embryonal cancer | 2.35e-08 | 22 |
germ cell cancer | 2.35e-08 | 22 |