FFCP PHASE1:Hg19::chr14:74960030..74960050,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10577 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=14537 | |||
|TSSclassifier=strong | |||
|UniProt=G3V3D1,G3V3E8 | |||
|association_with_transcript=0bp_to_ENST00000553490,ENST00000557510_5end | |||
|description=CAGE_peak_2_at_NPC2_5end | |||
|id=chr14:74960030..74960050,- | |||
|ontology_enrichment_celltype=CL:0000766!1.21e-26!76;CL:0002194!3.40e-25!63;CL:0000576!3.40e-25!63;CL:0000040!3.40e-25!63;CL:0000559!3.40e-25!63;CL:0000839!9.86e-25!70;CL:0002057!3.00e-24!42;CL:0000557!2.47e-23!71;CL:0002009!3.08e-23!65;CL:0000860!3.00e-20!45;CL:0000763!5.57e-11!112;CL:0000049!5.57e-11!112;CL:0000144!2.23e-08!625;CL:0002371!1.20e-07!591;CL:0002320!4.43e-07!365 | |||
|ontology_enrichment_celltype_v019=CL:0000473;2.46e-18;39!CL:0000234;2.46e-18;39!CL:0000860;1.08e-17;33!CL:0002057;1.08e-17;33!CL:0000576;5.92e-16;48!CL:0000766;5.31e-13;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,4.79e-30,72;CL:0002194,5.85e-29,59;CL:0000576,5.85e-29,59;CL:0000040,5.85e-29,59;CL:0000559,5.85e-29,59;CL:0000473,1.93e-28,48;CL:0000234,1.93e-28,48;CL:0000839,3.67e-28,66;CL:0002009,1.06e-26,61;CL:0000557,1.38e-26,67;CL:0000860,3.00e-24,42;CL:0002057,3.00e-24,42;CL:0000763,2.16e-12,108;CL:0000049,2.16e-12,108;CL:0002320,1.39e-07,361;CL:0000048,3.41e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;1.19e-17;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!3.35e-24!80;UBERON:0001474!2.15e-23!86;UBERON:0002405!2.07e-20!115;UBERON:0002193!2.55e-20!112;UBERON:0004765!7.08e-20!101;UBERON:0001434!7.08e-20!101;UBERON:0003081!3.13e-18!216;UBERON:0002390!4.84e-18!102;UBERON:0003061!4.84e-18!102;UBERON:0000926!5.80e-17!448;UBERON:0004120!5.80e-17!448;UBERON:0006603!5.80e-17!448;UBERON:0002204!1.73e-14!167;UBERON:0000062!2.44e-09!511;UBERON:0000468!1.53e-08!659;UBERON:0000922!8.75e-08!612;UBERON:0000480!5.63e-07!626;UBERON:0002050!5.75e-07!605;UBERON:0005423!5.75e-07!605;UBERON:0000467!6.38e-07!625;UBERON:0000923!6.62e-07!604;UBERON:0005291!6.62e-07!604;UBERON:0006598!6.62e-07!604;UBERON:0002532!6.62e-07!604 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.91e-27,76;UBERON:0001474,3.14e-26,82;UBERON:0004765,5.33e-26,90;UBERON:0002405,5.39e-26,93;UBERON:0000926,1.40e-24,315;UBERON:0004120,1.40e-24,315;UBERON:0006603,1.40e-24,315;UBERON:0001434,8.22e-23,100;UBERON:0002193,1.84e-22,108;UBERON:0002390,3.82e-20,98;UBERON:0003061,3.82e-20,98;UBERON:0003081,1.11e-18,203;UBERON:0002204,9.63e-17,167;UBERON:0000922,1.97e-07,592;UBERON:0005423,3.29e-07,581;UBERON:0002384,4.06e-07,371;UBERON:0000923,5.06e-07,560;UBERON:0010316,5.06e-07,560;UBERON:0005291,5.06e-07,560;UBERON:0006598,5.06e-07,560;UBERON:0010317,5.06e-07,560;UBERON:0002532,5.06e-07,560;UBERON:0002050,5.14e-07,564 | |||
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| |||
|short_description=p2@NPC2 | |||
}} |
Revision as of 21:00, 11 January 2014
Short description: | p2@NPC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NPC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000553490, ENST00000557510_5end |
EntrezGene: | NPC2 |
HGNC: | 14537 |
UniProt: | G3V3D1G3V3E8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 4.79e-30 | 72 |
monopoietic cell | 5.85e-29 | 59 |
monocyte | 5.85e-29 | 59 |
monoblast | 5.85e-29 | 59 |
promonocyte | 5.85e-29 | 59 |
defensive cell | 1.93e-28 | 48 |
phagocyte | 1.93e-28 | 48 |
myeloid lineage restricted progenitor cell | 3.67e-28 | 66 |
macrophage dendritic cell progenitor | 1.06e-26 | 61 |
granulocyte monocyte progenitor cell | 1.38e-26 | 67 |
classical monocyte | 3.00e-24 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.00e-24 | 42 |
myeloid cell | 2.16e-12 | 108 |
common myeloid progenitor | 2.16e-12 | 108 |
connective tissue cell | 1.39e-07 | 361 |
multi fate stem cell | 3.41e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.91e-27 | 76 |
bone element | 3.14e-26 | 82 |
skeletal element | 5.33e-26 | 90 |
immune system | 5.39e-26 | 93 |
mesoderm | 1.40e-24 | 315 |
mesoderm-derived structure | 1.40e-24 | 315 |
presumptive mesoderm | 1.40e-24 | 315 |
skeletal system | 8.22e-23 | 100 |
hemolymphoid system | 1.84e-22 | 108 |
hematopoietic system | 3.82e-20 | 98 |
blood island | 3.82e-20 | 98 |
lateral plate mesoderm | 1.11e-18 | 203 |
musculoskeletal system | 9.63e-17 | 167 |
embryo | 1.97e-07 | 592 |
developing anatomical structure | 3.29e-07 | 581 |
connective tissue | 4.06e-07 | 371 |
germ layer | 5.06e-07 | 560 |
germ layer / neural crest | 5.06e-07 | 560 |
embryonic tissue | 5.06e-07 | 560 |
presumptive structure | 5.06e-07 | 560 |
germ layer / neural crest derived structure | 5.06e-07 | 560 |
epiblast (generic) | 5.06e-07 | 560 |
embryonic structure | 5.14e-07 | 564 |