FFCP PHASE1:Hg19::chr19:2819943..2819977,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=115196 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=26629 | |||
|TSSclassifier=strong | |||
|UniProt=Q86TJ5,B3KNM4 | |||
|association_with_transcript=71bp_to_ENST00000317243,NM_001102651,uc002lwl.2,uc002lwm.2_5end | |||
|description=CAGE_peak_2_at_ZNF554_5end | |||
|id=chr19:2819943..2819977,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3095!3.54e-07!22;DOID:2994!3.54e-07!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;8.73e-07;22!DOID:2994;8.73e-07;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.33e-07,22;DOID:2994,3.33e-07,22 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.13e-18!94;UBERON:0001016!1.13e-18!94;UBERON:0005743!1.39e-16!86;UBERON:0001017!3.96e-16!82;UBERON:0000955!5.77e-13!69;UBERON:0006238!5.77e-13!69;UBERON:0001049!2.24e-11!57;UBERON:0005068!2.24e-11!57;UBERON:0006241!2.24e-11!57;UBERON:0007135!2.24e-11!57;UBERON:0002616!8.06e-11!59;UBERON:0002346!1.34e-10!90;UBERON:0000924!3.01e-10!173;UBERON:0006601!3.01e-10!173;UBERON:0001893!7.54e-10!34;UBERON:0002619!1.19e-09!22;UBERON:0001869!1.35e-09!32;UBERON:0003075!1.98e-09!86;UBERON:0007284!1.98e-09!86;UBERON:0002791!2.80e-09!33;UBERON:0004121!2.87e-09!169;UBERON:0000956!3.00e-09!25;UBERON:0000203!3.00e-09!25;UBERON:0002780!5.19e-09!41;UBERON:0001890!5.19e-09!41;UBERON:0006240!5.19e-09!41;UBERON:0001950!5.97e-09!20;UBERON:0002020!6.21e-09!34;UBERON:0003528!6.21e-09!34;UBERON:0003080!2.03e-08!42;UBERON:0007023!7.89e-08!115;UBERON:0000153!3.60e-07!129;UBERON:0007811!3.60e-07!129;UBERON:0000033!9.36e-07!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.16e-13;22!UBERON:0001950;2.54e-13;20!UBERON:0000922;1.32e-11;49!UBERON:0000956;2.74e-11;25!UBERON:0000203;2.74e-11;25!UBERON:0001869;1.29e-10;32!UBERON:0001893;1.49e-10;34!UBERON:0002791;1.11e-09;32!UBERON:0002780;3.74e-09;41!UBERON:0001890;3.74e-09;41!UBERON:0000073;1.04e-08;53!UBERON:0002616;1.04e-08;53!UBERON:0003528;2.95e-08;34!UBERON:0002020;2.95e-08;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.71e-17,89;UBERON:0001017,2.19e-16,81;UBERON:0000073,5.78e-15,53;UBERON:0002616,5.78e-15,53;UBERON:0000955,4.67e-14,68;UBERON:0006238,4.67e-14,68;UBERON:0001049,1.04e-13,56;UBERON:0005068,1.04e-13,56;UBERON:0006241,1.04e-13,56;UBERON:0007135,1.04e-13,56;UBERON:0002619,1.26e-13,22;UBERON:0002346,1.65e-13,86;UBERON:0001950,1.76e-13,20;UBERON:0002780,1.58e-12,41;UBERON:0001890,1.58e-12,41;UBERON:0003080,1.58e-12,41;UBERON:0006240,1.58e-12,41;UBERON:0001893,2.88e-12,34;UBERON:0001869,5.15e-12,32;UBERON:0003075,1.07e-11,82;UBERON:0007284,1.07e-11,82;UBERON:0000956,1.72e-11,25;UBERON:0000203,1.72e-11,25;UBERON:0003056,7.00e-11,61;UBERON:0002791,1.80e-10,32;UBERON:0003528,1.42e-09,34;UBERON:0002020,1.42e-09,34;UBERON:0010371,3.33e-09,104;UBERON:0004121,7.86e-09,171;UBERON:0000924,7.86e-09,171;UBERON:0006601,7.86e-09,171;UBERON:0007023,2.91e-07,114;UBERON:0010314,8.46e-07,132 | |||
|phase1_expression=0.181678379270557,0,0.704772020479856,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0.263766978228454,0.37129905888014,0.994192127183747,0,1.20538905604795,0,0.487932798790507,0.861847406537515,0.612002073732759,1.88072832886853,0.286235987131057,0.410623275218653,0.376627918784408,0.0764134057479513,0,0.0787107813136792,0,0.383829398097213,0.154816123316076,0,0.30120591877825,0,0.697204805222715,0.142169232487422,1.76160263600908,0,0.401088894940283,0,0.223915474239924,0.32389366601898,0.257575567634187,0,0.377875943688809,0.242584061187816,0.232429036905685,0,0,0.28769239232215,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150176892841506,0,0,0,0,1.75996244461323,1.63841583378639,0,1.28019066769952,0.400395987036012,0.574752439954483,0,0.954053754535364,0.569212969109448,0,1.14681968437569,1.32171328579026,5.04457706683382,2.37045676297569,0.786839080455332,1.17903228824749,0.616804496998528,0,1.30368906653436,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0,0,0.889719378972363,0,1.04535523804977,0,0,0,0,1.27426165729639,3.25541726928209,0.950452044448374,0.752875595388864,0.76791966692651,1.24930726552346,0.236777252044017,0,0.403213486449465,0.267440195783507,1.59306844271079,0,0,0.255725123687061,0.361439152384566,0,0,0,0,0.472674085820339,1.10864698731282,0.87834785693126,1.37528029272598,0,0,0,0,0,0.953962497221368,1.14398982156026,0.371457501329565,0.198762407366705,1.72046919021225,0,0,0,0,0,0.516833518338658,1.06729878806013,0.33472061276467,0.805658634218294,0.760272105718513,0.976248230192678,0,0.81014194788176,0.0892997282840798,0.22452937262617,0.337834441449967,0,0.949265659568129,0.183201743930407,0,0,0.436094052142534,0.496971951695318,0,0.529636723252875,0,0,0,0,0.74000264525148,0.933633106199299,0.67355336034844,0.163461903113459,0.605429710579726,0.576175924479999,0,0,0,0,0.23486899728753,0.161872944368132,0,0.204154171254893,0.122834317311768,0.206651562351531,0,0.247266929278557,0,0,0.505008341862199,0.125118519871964,0,0,0,0,0.113432183160021,0.358779271377724,0.427114777637135,0,0.300091096084402,0.103052529238439,0.257640540045629,0.37223371266318,0.168776332241266,0.0974370051611986,0.504867548488229,0.368199594569197,0.646584227275248,0,0,0,0.193260853163297,0,0.860413786167011,1.46368447355514,1.19276791489337,0.929551542956147,0.829288440122964,1.26160425437814,1.45990943630332,0,0,0,0.928735856063958,0.721879481669586,0.118306800039844,0,0.241011029883482,0,0.217879444092406,0,0,0,0,0,0,1.2347220339942,0,1.26755034821831,0,0,2.20731549707325,0.614942192715568,0,0.439001141634502,0,0.100528972411631,0.0925884451585296,0,2.07986957055916,0,0.463721619900307,0.352226082707465,0.288732895522148,0,0.380508304469197,0.790204397959275,0,0,0,0,0,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0.264145302039678,0.207328115540772,0.144119953416961,0.37872730027914,0.380987365753014,0.381988425558278,1.17217447210047,0,0.102827492703324,0,0,0.336393253036082,1.30788020649984,0.2933531432838,0,0,0,0.797814349754612,0,0.257207374262142,0,0,0.428933980974443,0,0,0,1.42156779497018,0,0.602878754119172,0,0.99972991182057,0,0,0,0,0,0,0,0,0,0.112085143993527,0.394061520403854,0.431255149719035,0.641715181398742,0,1.30139853857622,4.63973287666617,1.84267891867784,5.74144876487847,0,0,0,0.613457458595699,1.00034104211935,0,1.24782516918484,0.356857977594324,0.157702415033935,0.585707074963566,0.601892199455438,0,0,0,0.737476674166813,0.0868836144680828,1.95801157462741,1.02943027143257,0.206768026122887,0.215714200818617,0.213455115606889,1.21251028578504,3.32870879020994,0.907170879989041,0.248107807818777,0,0.280660094433074,0.384417447767103,0.511707249066704,0.64341568457443,0,0.154209693802656,0.177561725313127,0.0821271560138091,0,0,1.45031339509947,0.40101294060657,0.184161977871793,0.114814448164607,0.182091168006717,0.655622074797121,0.451199612907412,0.0770153371044148,0,0,0.105551628892876,0,0.340187410553031,0,0,0.270946437543853,2.00675909541941,0.254876273045038,0,0.223874754722178,0,0,0.256450125116389,0.656029291399411,0.325378394664303,1.23649213977267,0.183138929636687,0.165018999841176,0.574265537996172,0,0,0.290012154876366,0,0.15350367472613,0,0.214840489736547,0.145016693914229,0.0852266274161009,0.801288320820636,0,0.192190067365106,0.510450849978337,0.10115778085555,0,0.31481234683064,0,0.616067160352178,0,0.869932992075073,0,0.143124886741991,0.744316738719335,0.316379424718726,0,0,0,0.636406495851874,0,0.179872457583315,0,0.235624804691373,0.202182481573316,0,0,0.48763373908959,0.487426979262569,0,0.272999822815972,0,0,0.551365343546124,0,0,0,0,0,0.30982349809975,0,0.286822704408103,0.589494246078727,0,0,0.633322905892992,0,0,0,0,0,0,1.22386941009813,0.43050537267123,1.68471475667626,0,0.229723400206959,0,0,0.569647187174163,0,0.822724546172388,0,0,0,2.02965735142199,1.92495971052672,0,0.557409525377156,1.00988449083511,0.426851060090485,1.4348364545594,0.997896857164083,0.766021480529467,0.8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| |||
|short_description=p2@ZNF554 | |||
}} |
Revision as of 20:26, 20 January 2014
Short description: | p2@ZNF554 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ZNF554_5end |
Coexpression cluster: | NA |
Association with transcript: | 71bp_to_ENST00000317243, NM_001102651, uc002lwl.2, uc002lwm.2_5end |
EntrezGene: | ZNF554 |
HGNC: | 26629 |
UniProt: | Q86TJ5B3KNM4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
nervous system | 5.71e-17 | 89 |
central nervous system | 2.19e-16 | 81 |
regional part of nervous system | 5.78e-15 | 53 |
regional part of brain | 5.78e-15 | 53 |
brain | 4.67e-14 | 68 |
future brain | 4.67e-14 | 68 |
neural tube | 1.04e-13 | 56 |
neural rod | 1.04e-13 | 56 |
future spinal cord | 1.04e-13 | 56 |
neural keel | 1.04e-13 | 56 |
regional part of cerebral cortex | 1.26e-13 | 22 |
neurectoderm | 1.65e-13 | 86 |
neocortex | 1.76e-13 | 20 |
regional part of forebrain | 1.58e-12 | 41 |
forebrain | 1.58e-12 | 41 |
anterior neural tube | 1.58e-12 | 41 |
future forebrain | 1.58e-12 | 41 |
telencephalon | 2.88e-12 | 34 |
cerebral hemisphere | 5.15e-12 | 32 |
neural plate | 1.07e-11 | 82 |
presumptive neural plate | 1.07e-11 | 82 |
cerebral cortex | 1.72e-11 | 25 |
pallium | 1.72e-11 | 25 |
pre-chordal neural plate | 7.00e-11 | 61 |
regional part of telencephalon | 1.80e-10 | 32 |
brain grey matter | 1.42e-09 | 34 |
gray matter | 1.42e-09 | 34 |
ecto-epithelium | 3.33e-09 | 104 |
ectoderm-derived structure | 7.86e-09 | 171 |
ectoderm | 7.86e-09 | 171 |
presumptive ectoderm | 7.86e-09 | 171 |
adult organism | 2.91e-07 | 114 |
structure with developmental contribution from neural crest | 8.46e-07 | 132 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.33e-07 | 22 |
germ cell cancer | 3.33e-07 | 22 |