FFCP PHASE1:Hg19::chr2:102091566..102091581,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=731220 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37253 | |||
|TSSclassifier=weak | |||
|UniProt=Q6ZV50,E9PDA6 | |||
|association_with_transcript=-401bp_to_ENST00000428343,ENST00000481179,NM_001145664,uc002tbb.1,uc010yvx.1_5end | |||
|coexpression_cluster_id=C4110 | |||
|description=CAGE_peak_1_at_RFX8_5end | |||
|id=chr2:102091566..102091581,- | |||
|ontology_enrichment_celltype=CL:0000048!1.78e-36!430;CL:0000723!1.17e-34!436;CL:0000034!8.61e-34!444;CL:0000134!7.17e-26!358;CL:0002320!8.28e-25!365;CL:0000055!9.75e-25!180;CL:0000219!3.10e-23!390;CL:0000057!1.89e-18!75;CL:0002371!7.15e-17!591;CL:0002620!4.50e-14!23;CL:0000144!1.48e-12!625;CL:0002057!1.64e-09!42;CL:0000680!3.59e-09!57;CL:0000056!3.59e-09!57;CL:0000355!3.59e-09!57;CL:0000187!3.42e-08!54;CL:0000860!4.43e-08!45;CL:0000003!9.27e-08!722;CL:0000012!2.01e-07!682;CL:0000548!4.65e-07!679;CL:0000004!4.65e-07!679;CL:0000255!4.65e-07!679;CL:0000183!6.61e-07!59;CL:0000763!9.39e-07!112;CL:0000049!9.39e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0002620;4.89e-18;23!CL:0000860;3.94e-11;33!CL:0002057;3.94e-11;33!CL:0000057;8.45e-09;73!CL:0002551;3.11e-08;6!CL:0002539;7.96e-08;10!CL:0000576;3.21e-07;48!CL:0000473;3.38e-07;39!CL:0000234;3.38e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.06e-36,427;CL:0000723,3.68e-35,433;CL:0000034,4.93e-35,441;CL:0000134,6.66e-28,354;CL:0002320,1.74e-26,361;CL:0000219,5.36e-25,386;CL:0000057,2.24e-20,76;CL:0002620,2.25e-18,23;CL:0000860,8.26e-11,42;CL:0002057,8.26e-11,42;CL:0000763,2.09e-09,108;CL:0000049,2.09e-09,108;CL:0002009,7.03e-09,61;CL:0000473,1.88e-08,48;CL:0000234,1.88e-08,48;CL:0002551,2.94e-08,6;CL:0000557,4.22e-08,67;CL:0002194,5.81e-08,59;CL:0000576,5.81e-08,59;CL:0000040,5.81e-08,59;CL:0000559,5.81e-08,59;CL:0002539,8.10e-08,10;CL:0000839,2.58e-07,66;CL:0000680,4.04e-07,58;CL:0000056,4.04e-07,58;CL:0000355,4.04e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002057;2.03e-08;42 | |||
|ontology_enrichment_disease=DOID:2394!5.20e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.56e-08;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.63e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!6.25e-24!375;UBERON:0002204!1.61e-15!167;UBERON:0000914!1.42e-12!83;UBERON:0002329!1.42e-12!83;UBERON:0003077!1.42e-12!83;UBERON:0003059!1.42e-12!83;UBERON:0007282!1.42e-12!83;UBERON:0009618!1.42e-12!83;UBERON:0007285!1.42e-12!83;UBERON:0004290!5.99e-12!70;UBERON:0002199!1.68e-10!45;UBERON:0002416!1.68e-10!45;UBERON:0002097!3.26e-10!40;UBERON:0000486!2.20e-09!82;UBERON:0004765!6.97e-08!101;UBERON:0001434!6.97e-08!101;UBERON:0002067!1.07e-07!9;UBERON:0004016!1.07e-07!9;UBERON:0010083!1.07e-07!9;UBERON:0001134!1.17e-07!61;UBERON:0002036!1.17e-07!61;UBERON:0003082!1.17e-07!61;UBERON:0002371!3.17e-07!80;UBERON:0002385!5.36e-07!63;UBERON:0001015!5.36e-07!63;UBERON:0000383!5.36e-07!63;UBERON:0001474!9.68e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;2.41e-10;9!UBERON:0002097;6.73e-09;41!UBERON:0002385;4.65e-08;31!UBERON:0001015;4.65e-08;31!UBERON:0000383;4.65e-08;31!UBERON:0004237;7.96e-08;10!UBERON:0004695;7.96e-08;10!UBERON:0002111;7.96e-08;10!UBERON:0004178;7.96e-08;10!UBERON:0002199;1.70e-07;46!UBERON:0002416;1.70e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,5.18e-26,371;UBERON:0002204,7.30e-16,167;UBERON:0002199,1.20e-12,46;UBERON:0002416,1.20e-12,46;UBERON:0002097,9.56e-12,41;UBERON:0002329,3.63e-11,71;UBERON:0003059,3.63e-11,71;UBERON:0007282,3.63e-11,71;UBERON:0004290,3.63e-11,71;UBERON:0009618,3.63e-11,71;UBERON:0003077,7.51e-11,72;UBERON:0007285,7.51e-11,72;UBERON:0007524,1.52e-10,73;UBERON:0002067,2.47e-10,9;UBERON:0004016,2.47e-10,9;UBERON:0010083,2.47e-10,9;UBERON:0002371,6.44e-10,76;UBERON:0001474,3.48e-09,82;UBERON:0007503,3.76e-09,78;UBERON:0001434,3.92e-09,100;UBERON:0000486,5.87e-08,83;UBERON:0004237,8.10e-08,10;UBERON:0004695,8.10e-08,10;UBERON:0002111,8.10e-08,10;UBERON:0004178,8.10e-08,10;UBERON:0000926,1.80e-07,315;UBERON:0004120,1.80e-07,315;UBERON:0006603,1.80e-07,315;UBERON:0004765,2.05e-07,90;UBERON:0002405,4.24e-07,93;UBERON:0003102,9.48e-07,99;UBERON:0002390,9.56e-07,98;UBERON:0003061,9.56e-07,98 | |||
|phase1_expression=0.54503513781167,0.642301571672949,0,0,0,0,0,1.89515962028049,0,1.22866968250754,0.697801167972428,0,0,0.123766352960047,0,3.36162573225888,3.01347264011988,2.92124036154949,1.46379839637152,0,0.204000691244253,0,0,0.547497700291537,0.251085279189606,0.0764134057479513,0.0821005894499457,0,1.18009283054671,0,0.309632246632152,0,0,0,0,0,3.52320527201817,3.32397245119126,6.01633342410425,2.82114131930607,0,0,0,1.16318591023652,0.755751887377619,0.485168122375632,7.20530014407622,11.5127008646111,9.91060386864331,2.01384674625505,1.0246428261164,0.709446689665756,4.48169384957604,7.10033151942209,6.77132432971709,5.27078550719293,4.36649840092553,3.59557575112135,5.20342617030534,5.45579346029359,4.47535988059329,0,0,0,9.28669563611469,9.64554881974938,6.85104473895132,5.02497330513487,2.08593167368081,3.47502151528187,1.81619850790011,5.15588690382591,4.74693581161327,0,0,0,0.22465726229299,0.300353785683013,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36305137788922,1.58030450865046,0.196709770113833,0.393010762749165,1.64481199199607,0,0.32592226663359,0.473447805734733,0,1.00269411196656,0,0.221533894583621,1.08321545506006,0.25618263945135,0.780356085359269,1.47994114143309,1.10540007114339,1.15921234294021,0,0.267540828089713,0,0.566546713487831,0.383220493601921,0.68725489096526,0.253019692019503,0,0,0,0.150575119077773,0.255973222308837,0,0,0,0,0.267440195783507,0,0,0,0,3.2529523714611,1.50401373190767,0.724232594804119,12.7245751528176,4.37971383272372,0,0,0,0.130979075497713,0,0,0,0,0.132957960518865,0.238490624305342,0.571994910780128,0,0,0.860234595106124,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0.25326102332916,3.97227542439656,4.01571269048339,1.77334191099179,0,1.06748995729705,0.24666754841716,0.311211035399766,1.34710672069688,1.47115712802113,0,0,0.234321431833797,10.9256026890612,11.9799082524334,11.5075484024887,11.978318861664,11.8167249388736,14.4664330903316,10.0035543914898,4.54486974053541,2.37649296704261,5.94001428641027,1.23633464639278,0.910161361938026,0.718618141816238,9.25848626747364,13.1374445865562,12.4678851967882,1.75591048352335,3.0648779579902,1.95309476578576,0,24.755769725063,2.98980344345994,3.60284231971255,14.7044637081357,6.90451945897541,5.66809188100384,1.8611685633159,20.7594888656757,3.99491721160914,13.8838575834263,4.60249493211497,0.969876340912871,11.3603069605317,3.52632343796741,1.52604533079439,0,0,0,0,0,0,0,0,0,3.12899064659632,2.57296375277154,9.66944449467364,2.78620756819187,1.44375896333917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,26.0463228654644,0,0,0,0,0,0,0.651616610620649,0,0,0,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0.144119953416961,0,0.063497894292169,0,0,1.71072446022705,0.308482478109971,0,0,0.336393253036082,0,0.8800594298514,1.03417372606222,0,4.22651376278,0,0,1.80045161983499,0,4.26275486425759,0,0,0,6.5147236858747,0,0.791951872933429,0.301439377059586,0,0.099972991182057,0,0,0,0.479249710983165,0,4.27910715122155,2.31650090668127,2.05476322550383,2.86497541183833,0.112085143993527,0.394061520403854,0.215627574859517,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0,0.500170521059677,0,0.207970861530807,1.07057393278297,0.157702415033935,1.05427273493442,0.300946099727719,2.27407504055985,3.10419213877515,1.99267679560631,2.76553752812555,6.86380554297854,0,0,0.206768026122887,3.8828556147351,0.640365346820666,0,0,0.30239029332968,0,1.2276957863045,0.561320188866147,0.128139149255701,0.511707249066704,0,0,8.17311377154074,5.68197521002007,8.62335138144996,12.4621063004069,3.95115286763861,0,0,0,0.918515585316854,2.00300284807389,0,0,0,0,0,0.316654886678627,0,0,0,0,0,0.501689773854853,0,0,0,1.31555925987561,1.5686127061494,0,0,0,0.103041011647722,0,0,0.574265537996172,0.650060246036521,0,3.48014585851639,1.69453478826109,2.30255512089194,14.7485132558448,5.47843248828196,3.33538396002726,5.96586391912706,0.356128142586949,0,0,0.127612712494584,0,1.85938219718914,6.2962469366128,11.8496335927302,1.54016790088044,1.06461206063404,8.69932992075073,0,0.572499546967965,0,0.632758849437452,0,0.511795582622668,0,7.31867470229655,0.78494864019923,0.359744915166629,0.54907405947211,0.706874414074119,0.404364963146632,0,2.52755073743389,0,7.31140468893853,5.28250733783777,0.818999468447914,0.141405431953713,0,2.2054613741845,0,0,0,0.655894752046633,1.01455188481352,2.16876448669825,3.3803472303869,1.57752487424457,0,0.35667105148125,1.77380532035299,0.633322905892992,0.658589785919804,1.13841952129715,0.349934720244983,0,0,0,0,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0,0,0,0,0,0,0.782560276832555,4.3045093636782,1.99579371432817,3.63860203251497,1.2700414963433,0,8.70471252151722,3.65175486453108,0.626719583092093,7.51903431270201,0,8.83234413070347,8.27378799483295,8.94277099149685,12.0226870664518,7.06653757909453,5.36822658941798,2.66958626739054,6.44780714826733,0,0,0,0,0,0,0.146508179271894,0,0,7.95581211057957,0,0,0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| |||
|short_description=p1@RFX8 | |||
}} |
Revision as of 04:39, 21 January 2014
Short description: | p1@RFX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RFX8_5end |
Coexpression cluster: | C4110_schwannoma_Fibroblast_Hodgkin_Skeletal_biphenotypic_myxofibrosarcoma_Preadipocyte |
Association with transcript: | -401bp_to_ENST00000428343, ENST00000481179, NM_001145664, uc002tbb.1, uc010yvx.1_5end |
EntrezGene: | RFX8 |
HGNC: | 37253 |
UniProt: | Q6ZV50E9PDA6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.06e-36 | 427 |
somatic stem cell | 3.68e-35 | 433 |
stem cell | 4.93e-35 | 441 |
mesenchymal cell | 6.66e-28 | 354 |
connective tissue cell | 1.74e-26 | 361 |
motile cell | 5.36e-25 | 386 |
fibroblast | 2.24e-20 | 76 |
skin fibroblast | 2.25e-18 | 23 |
classical monocyte | 8.26e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.26e-11 | 42 |
myeloid cell | 2.09e-09 | 108 |
common myeloid progenitor | 2.09e-09 | 108 |
macrophage dendritic cell progenitor | 7.03e-09 | 61 |
defensive cell | 1.88e-08 | 48 |
phagocyte | 1.88e-08 | 48 |
fibroblast of dermis | 2.94e-08 | 6 |
granulocyte monocyte progenitor cell | 4.22e-08 | 67 |
monopoietic cell | 5.81e-08 | 59 |
monocyte | 5.81e-08 | 59 |
monoblast | 5.81e-08 | 59 |
promonocyte | 5.81e-08 | 59 |
aortic smooth muscle cell | 8.10e-08 | 10 |
myeloid lineage restricted progenitor cell | 2.58e-07 | 66 |
muscle precursor cell | 4.04e-07 | 58 |
myoblast | 4.04e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.18e-26 | 371 |
musculoskeletal system | 7.30e-16 | 167 |
integument | 1.20e-12 | 46 |
integumental system | 1.20e-12 | 46 |
skin of body | 9.56e-12 | 41 |
somite | 3.63e-11 | 71 |
presomitic mesoderm | 3.63e-11 | 71 |
presumptive segmental plate | 3.63e-11 | 71 |
dermomyotome | 3.63e-11 | 71 |
trunk paraxial mesoderm | 3.63e-11 | 71 |
paraxial mesoderm | 7.51e-11 | 72 |
presumptive paraxial mesoderm | 7.51e-11 | 72 |
dense mesenchyme tissue | 1.52e-10 | 73 |
dermis | 2.47e-10 | 9 |
dermatome | 2.47e-10 | 9 |
future dermis | 2.47e-10 | 9 |
bone marrow | 6.44e-10 | 76 |
bone element | 3.48e-09 | 82 |
epithelial vesicle | 3.76e-09 | 78 |
skeletal system | 3.92e-09 | 100 |
multilaminar epithelium | 5.87e-08 | 83 |
blood vessel smooth muscle | 8.10e-08 | 10 |
arterial system smooth muscle | 8.10e-08 | 10 |
artery smooth muscle tissue | 8.10e-08 | 10 |
aorta smooth muscle tissue | 8.10e-08 | 10 |
mesoderm | 1.80e-07 | 315 |
mesoderm-derived structure | 1.80e-07 | 315 |
presumptive mesoderm | 1.80e-07 | 315 |
skeletal element | 2.05e-07 | 90 |
immune system | 4.24e-07 | 93 |
surface structure | 9.48e-07 | 99 |
hematopoietic system | 9.56e-07 | 98 |
blood island | 9.56e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.63e-08 | 14 |