FFCP PHASE1:Hg19::chr2:157292859..157292909,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2820 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4456 | |||
|TSSclassifier=strong | |||
|UniProt=P43304 | |||
|association_with_transcript=0bp_to_ENST00000438166,NM_000408,uc002tzd.3_5end | |||
|description=CAGE_peak_1_at_GPD2_5end | |||
|id=chr2:157292859..157292909,+ | |||
|ontology_enrichment_celltype=CL:0002009!2.64e-27!65;CL:0002194!1.45e-26!63;CL:0000576!1.45e-26!63;CL:0000040!1.45e-26!63;CL:0000559!1.45e-26!63;CL:0000557!6.61e-25!71;CL:0000839!8.47e-22!70;CL:0002057!5.05e-21!42;CL:0000860!1.14e-19!45;CL:0000766!1.70e-19!76;CL:0000763!7.37e-15!112;CL:0000049!7.37e-15!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.02e-20;33!CL:0002057;3.02e-20;33!CL:0000473;3.20e-20;39!CL:0000234;3.20e-20;39!CL:0000576;5.85e-16;48!CL:0000766;5.08e-10;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,2.47e-29,61;CL:0002194,1.33e-28,59;CL:0000576,1.33e-28,59;CL:0000040,1.33e-28,59;CL:0000559,1.33e-28,59;CL:0000557,1.29e-26,67;CL:0000473,8.41e-25,48;CL:0000234,8.41e-25,48;CL:0000839,2.49e-23,66;CL:0000860,4.93e-21,42;CL:0002057,4.93e-21,42;CL:0000766,8.15e-21,72;CL:0000763,1.20e-15,108;CL:0000049,1.20e-15,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.03e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!8.85e-25!101;UBERON:0001434!8.85e-25!101;UBERON:0002371!9.15e-24!80;UBERON:0001474!1.66e-21!86;UBERON:0000062!1.12e-17!511;UBERON:0002390!1.34e-16!102;UBERON:0003061!1.34e-16!102;UBERON:0000467!2.67e-16!625;UBERON:0000480!6.09e-16!626;UBERON:0000468!3.61e-15!659;UBERON:0002204!1.38e-14!167;UBERON:0002193!2.28e-14!112;UBERON:0002050!2.24e-12!605;UBERON:0005423!2.24e-12!605;UBERON:0000922!2.45e-12!612;UBERON:0000923!3.46e-12!604;UBERON:0005291!3.46e-12!604;UBERON:0006598!3.46e-12!604;UBERON:0002532!3.46e-12!604;UBERON:0003102!1.06e-10!95;UBERON:0002405!2.26e-10!115;UBERON:0000165!2.53e-10!28;UBERON:0000930!2.53e-10!28;UBERON:0000166!1.29e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;2.67e-10;28!UBERON:0000161;5.37e-07;19!UBERON:0000166;5.37e-07;19 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001434,1.29e-25,100;UBERON:0002371,3.17e-25,76;UBERON:0004765,1.30e-23,90;UBERON:0001474,9.46e-23,82;UBERON:0002405,5.74e-18,93;UBERON:0002390,1.79e-17,98;UBERON:0003061,1.79e-17,98;UBERON:0002193,5.00e-15,108;UBERON:0002204,6.38e-15,167;UBERON:0002050,2.02e-13,564;UBERON:0000923,1.61e-12,560;UBERON:0010316,1.61e-12,560;UBERON:0005291,1.61e-12,560;UBERON:0006598,1.61e-12,560;UBERON:0010317,1.61e-12,560;UBERON:0002532,1.61e-12,560;UBERON:0005423,1.08e-11,581;UBERON:0003102,2.36e-11,99;UBERON:0000922,3.29e-11,592;UBERON:0000165,1.17e-09,29;UBERON:0000930,1.17e-09,29;UBERON:0000166,5.44e-07,22 | |||
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| |||
|short_description=p1@GPD2 | |||
}} |
Revision as of 06:08, 21 January 2014
Short description: | p1@GPD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GPD2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000438166, NM_000408, uc002tzd.3_5end |
EntrezGene: | GPD2 |
HGNC: | 4456 |
UniProt: | P43304 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 2.47e-29 | 61 |
monopoietic cell | 1.33e-28 | 59 |
monocyte | 1.33e-28 | 59 |
monoblast | 1.33e-28 | 59 |
promonocyte | 1.33e-28 | 59 |
granulocyte monocyte progenitor cell | 1.29e-26 | 67 |
defensive cell | 8.41e-25 | 48 |
phagocyte | 8.41e-25 | 48 |
myeloid lineage restricted progenitor cell | 2.49e-23 | 66 |
classical monocyte | 4.93e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.93e-21 | 42 |
myeloid leukocyte | 8.15e-21 | 72 |
myeloid cell | 1.20e-15 | 108 |
common myeloid progenitor | 1.20e-15 | 108 |
Ontology term | p-value | n |
---|---|---|
skeletal system | 1.29e-25 | 100 |
bone marrow | 3.17e-25 | 76 |
skeletal element | 1.30e-23 | 90 |
bone element | 9.46e-23 | 82 |
immune system | 5.74e-18 | 93 |
hematopoietic system | 1.79e-17 | 98 |
blood island | 1.79e-17 | 98 |
hemolymphoid system | 5.00e-15 | 108 |
musculoskeletal system | 6.38e-15 | 167 |
embryonic structure | 2.02e-13 | 564 |
germ layer | 1.61e-12 | 560 |
germ layer / neural crest | 1.61e-12 | 560 |
embryonic tissue | 1.61e-12 | 560 |
presumptive structure | 1.61e-12 | 560 |
germ layer / neural crest derived structure | 1.61e-12 | 560 |
epiblast (generic) | 1.61e-12 | 560 |
developing anatomical structure | 1.08e-11 | 581 |
surface structure | 2.36e-11 | 99 |
embryo | 3.29e-11 | 592 |
mouth | 1.17e-09 | 29 |
stomodeum | 1.17e-09 | 29 |
oral opening | 5.44e-07 | 22 |