FFCP PHASE1:Hg19::chr8:122653648..122653661,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3037 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4819 | |||
|TSSclassifier=strong | |||
|UniProt=Q92819,E7ETI9 | |||
|association_with_transcript=-18bp_to_,18bp_to_ENST00000303924,ENST00000443194,NM_005328,uc003yph.2_5end | |||
|coexpression_cluster_id=C2007 | |||
|description=CAGE_peak_3_at_HAS2_5end | |||
|id=chr8:122653648..122653661,- | |||
|ontology_enrichment_celltype=CL:0000055!4.81e-40!180;CL:0000680!9.45e-21!57;CL:0000056!9.45e-21!57;CL:0000355!9.45e-21!57;CL:0000393!4.17e-20!60;CL:0000211!4.17e-20!60;CL:0000057!1.39e-19!75;CL:0000187!9.74e-19!54;CL:0000183!2.94e-17!59;CL:0000192!6.24e-15!42;CL:0000514!6.24e-15!42;CL:0000359!3.10e-13!32;CL:0002620!9.51e-12!23;CL:0000048!1.10e-09!430;CL:0000034!1.12e-09!444;CL:0000723!6.16e-09!436 | |||
|ontology_enrichment_celltype_v019=CL:0002620;2.34e-17;23!CL:0000359;3.60e-10;32!CL:0002570;1.09e-09;8!CL:0000723;1.63e-08;61!CL:0000192;3.22e-08;43!CL:0000057;8.99e-08;73!CL:0000048;1.95e-07;58!CL:0000134;2.17e-07;55!CL:0002595;2.55e-07;5!CL:0002320;2.81e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,3.15e-22,76;CL:0002620,9.62e-18,23;CL:0000048,1.79e-16,427;CL:0000723,7.63e-16,433;CL:0000034,1.09e-15,441;CL:0000680,2.72e-12,58;CL:0000056,2.72e-12,58;CL:0000355,2.72e-12,58;CL:0000187,8.55e-11,55;CL:0000393,8.95e-11,61;CL:0000211,8.95e-11,61;CL:0000359,1.68e-10,32;CL:0002570,1.48e-09,8;CL:0000192,1.87e-09,43;CL:0000514,1.87e-09,43;CL:0002595,2.06e-07,5;CL:0002320,4.67e-07,361;CL:0000134,8.34e-07,354 | |||
|ontology_enrichment_development_v019=CL:0000514;3.22e-08;43!CL:0000355;8.64e-08;58 | |||
|ontology_enrichment_disease=DOID:2394!6.82e-08!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;5.86e-12;14!DOID:17;4.91e-08;5!DOID:450;4.91e-08;5!DOID:66;4.91e-08;5!DOID:423;4.91e-08;5!DOID:0080000;4.91e-08;5!DOID:11722;4.91e-08;5 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,4.23e-12,14;DOID:17,4.99e-08,5;DOID:450,4.99e-08,5;DOID:66,4.99e-08,5;DOID:423,4.99e-08,5;DOID:0080000,4.99e-08,5;DOID:11722,4.99e-08,5 | |||
|ontology_enrichment_uberon=UBERON:0000914!9.39e-25!83;UBERON:0002329!9.39e-25!83;UBERON:0003077!9.39e-25!83;UBERON:0003059!9.39e-25!83;UBERON:0007282!9.39e-25!83;UBERON:0009618!9.39e-25!83;UBERON:0007285!9.39e-25!83;UBERON:0004290!2.12e-20!70;UBERON:0001134!4.00e-19!61;UBERON:0002036!4.00e-19!61;UBERON:0003082!4.00e-19!61;UBERON:0002385!8.33e-19!63;UBERON:0001015!8.33e-19!63;UBERON:0000383!8.33e-19!63;UBERON:0000486!2.05e-18!82;UBERON:0005256!1.15e-14!143;UBERON:0003102!1.95e-12!95;UBERON:0001637!2.82e-12!42;UBERON:0003509!2.82e-12!42;UBERON:0004572!2.82e-12!42;UBERON:0004573!2.29e-11!33;UBERON:0004571!2.29e-11!33;UBERON:0004872!5.39e-10!84;UBERON:0002199!7.72e-10!45;UBERON:0002416!7.72e-10!45;UBERON:0002097!4.38e-09!40;UBERON:0000490!7.10e-09!138;UBERON:0001981!2.24e-08!60;UBERON:0007500!2.24e-08!60;UBERON:0004537!2.24e-08!60;UBERON:0006965!2.24e-08!60;UBERON:0000475!7.54e-08!365;UBERON:0002100!9.22e-08!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0002199;7.75e-10;46!UBERON:0002416;7.75e-10;46!UBERON:0002097;1.17e-09;41!UBERON:0003102;3.79e-08;50!UBERON:0002118;5.14e-08;5!UBERON:0003834;2.55e-07;5!UBERON:0001533;2.55e-07;5!UBERON:0002384;3.34e-07;198!UBERON:0000992;5.19e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,2.14e-14,46;UBERON:0002416,2.14e-14,46;UBERON:0002329,2.90e-13,71;UBERON:0003059,2.90e-13,71;UBERON:0007282,2.90e-13,71;UBERON:0004290,2.90e-13,71;UBERON:0009618,2.90e-13,71;UBERON:0003077,5.97e-13,72;UBERON:0007285,5.97e-13,72;UBERON:0007524,1.20e-12,73;UBERON:0002097,1.56e-12,41;UBERON:0000486,1.89e-12,83;UBERON:0007503,2.97e-11,78;UBERON:0003102,4.98e-11,99;UBERON:0001134,5.38e-11,62;UBERON:0002036,5.38e-11,62;UBERON:0003082,5.38e-11,62;UBERON:0002385,2.05e-10,64;UBERON:0001015,2.05e-10,64;UBERON:0000383,2.05e-10,64;UBERON:0001637,8.26e-09,42;UBERON:0003509,8.26e-09,42;UBERON:0004572,8.26e-09,42;UBERON:0002384,1.79e-08,371;UBERON:0002118,3.68e-08,5;UBERON:0004573,8.56e-08,33;UBERON:0004571,8.56e-08,33;UBERON:0003834,2.06e-07,5;UBERON:0001533,2.06e-07,5;UBERON:0000992,4.26e-07,13;UBERON:0005256,8.48e-07,122 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0.281908808191942,0,0,0,0,0,1.04474251279935,1.22866968250754,0,0,0,1.48519623552056,0.994192127183747,0,0.602694528023977,0.730310090387373,0.975865597581014,0,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.12786256184353,2.89151321907653,1.50401373190767,0.434539556882471,4.7717156823066,0,0.189069634328136,0,0.263504357079378,0,0,0,0,0,0,0,0,0,0,0,0,0.56530794192401,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.633152558322899,1.85372853138506,2.86836620748814,1.77334191099179,0,1.06748995729705,0.24666754841716,0.311211035399766,0.538842688278752,0.653847612453835,0,0.576175924479999,0.234321431833797,0,0,0.298897361103602,1.996386476944,2.42809416552197,1.96631129383148,0.408308342509787,0.122834317311768,1.54988671763648,3.56400857184616,1.48360157567134,0,0,0.505008341862199,0.750711119231785,3.3247693858102,2.63386572528503,5.51678032438235,1.65261864797256,0.453728732640084,2.33206526395521,2.34913127700424,4.02670612203168,3.90118424909723,4.225153698776,1.8034837803194,2.60563598864226,20.4219362011932,8.47701944902428,3.78650661366172,2.48534726334208,0.80823028409406,2.13005755509969,2.72030665214629,3.22165125389926,0,0.272746120590835,0,0.487894824518382,0.795178609928912,3.48581828608555,0.829288440122964,0.252320850875628,0.36497735907583,1.56449532329816,2.57296375277154,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,2.05881372358231,0,0,0,0,0,1.03993478527958,0,0,1.05667824812239,0,0,0,0,0,0,0,0,0.93733833986777,0.503946384596579,1.27597587518148,0,0.581267877027924,0,0,0,0,0,0.12624243342638,0,0,0,0,0.205654985406647,0,0,0,0,0,0.517086863031111,0,3.381211010224,0,0,0,0,0,0.57191197463259,0.542621605391443,0,4.56030658011229,0.355391948742546,4.75171123760058,0.301439377059586,0,0,0,0,0,0,0,12.8373214536647,9.84512885339539,0.821905290201534,20.0548278828683,0,0,0,0,0,1.30139853857622,0,0.502548796003046,1.27587750330633,0,0,0,1.47229790062968,0.500170521059677,0,0,0.356857977594324,0.157702415033935,0.585707074963566,0,0,1.03473071292505,9.29915837949611,4.97796755062599,0.60818530127658,0,0.343143423810856,0,0,0,0,0,0.30239029332968,0,1.84154367945675,0.561320188866147,0,0,0.160853921143607,0,10.6404688723832,11.8966355959795,12.6475820261266,2.07701771673448,14.177666172115,0,2.00506470303285,0,0.803701137152247,0.182091168006717,0.131124414959424,0,0.0770153371044148,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0.574265537996172,0,3.21367859688319,1.54673149267395,0.308097234229289,0.460511024178389,3.99726060205139,0.322260734604821,0.725083469571143,1.36362603865761,0.445160178233687,0,0.192190067365106,0,0,6.04299214086472,12.277681526395,13.2437081330514,0.924100740528266,2.12922412126809,8.69932992075073,0.74129687641568,2.57624796135584,0,0,0,1.02359116524534,0.42793898803392,0.95460974377781,0.78494864019923,0.899362287916574,0.274537029736055,1.17812402345686,1.2130948894399,1.58510321173008,0.421258456238981,0.48763373908959,5.60541026151954,1.05650146756755,0.818999468447914,0.282810863907425,2.26016233240486,1.65409603063837,3.98063385144732,2.63070531152258,0,0,1.01455188481352,2.16876448669825,1.69017361519345,2.58140433967293,0.196498082026242,0.7133421029625,4.25713276884717,1.05553817648832,1.31717957183961,0.75894634753143,0.349934720244983,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,3.97790605528978,0,0,0,0,0,0.111308705022906,0,0,0.796991953004279,0.276283915531148,0,0,0,13.6857418571195,0.0898683511473268,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,2.04828206913899,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,3.57230614267263,0,0,0,0,0,0,0,0,0,0,0,0,0.432777279484182,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0.832048038078832,0,0.391969589657511,0.522355239482415,0,0,0,0,0,0,0,0.677942222341597,0.274083849293502,0.794858446811959,0,0,0.320635281006135,0.213452994739353,0,0.144090417154106,0,0,0.14405479798815,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0.558564802544508,0,0,0.199679000498991,0,0,0.53746777989381,2.16179930125442,0,0,0,0,0,0,0,0,1.28602518772015,0.962776056180637,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0.542999601753713,0,6.53174720218818,0,0.246277562248017,44.9824377513513,1.13312091520126,0,0,0,0.13223260174269,0,0,0.320362237703084,2.20086027139532,0,0,0,0,0,0,0.2506898940227,0.306345576763462,0.327872630709804,0,0,0,0,0,0.110929051536852,0.18628920882415,0,1.62474530350739,0,0,0,0,0,17.0150475291036,3.03827302801392,2.21922344601045,3.4092540949516,1.25783950876288,0.889811221596536,0.457680136793847,1.05861646634267,16.4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| |||
|short_description=p3@HAS2 | |||
}} |
Revision as of 23:34, 22 January 2014
Short description: | p3@HAS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HAS2_5end |
Coexpression cluster: | C2007_liposarcoma_Fibroblast_Myoblast_Preadipocyte_mesenchymal_basal_Smooth |
Association with transcript: | -18bp_to_, 18bp_to_ENST00000303924, ENST00000443194, NM_005328, uc003yph.2_5end |
EntrezGene: | HAS2 |
HGNC: | 4819 |
UniProt: | Q92819E7ETI9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 3.15e-22 | 76 |
skin fibroblast | 9.62e-18 | 23 |
multi fate stem cell | 1.79e-16 | 427 |
somatic stem cell | 7.63e-16 | 433 |
stem cell | 1.09e-15 | 441 |
muscle precursor cell | 2.72e-12 | 58 |
myoblast | 2.72e-12 | 58 |
multi-potent skeletal muscle stem cell | 2.72e-12 | 58 |
muscle cell | 8.55e-11 | 55 |
electrically responsive cell | 8.95e-11 | 61 |
electrically active cell | 8.95e-11 | 61 |
vascular associated smooth muscle cell | 1.68e-10 | 32 |
mesenchymal stem cell of adipose | 1.48e-09 | 8 |
smooth muscle cell | 1.87e-09 | 43 |
smooth muscle myoblast | 1.87e-09 | 43 |
smooth muscle cell of the subclavian artery | 2.06e-07 | 5 |
connective tissue cell | 4.67e-07 | 361 |
mesenchymal cell | 8.34e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
integument | 2.14e-14 | 46 |
integumental system | 2.14e-14 | 46 |
somite | 2.90e-13 | 71 |
presomitic mesoderm | 2.90e-13 | 71 |
presumptive segmental plate | 2.90e-13 | 71 |
dermomyotome | 2.90e-13 | 71 |
trunk paraxial mesoderm | 2.90e-13 | 71 |
paraxial mesoderm | 5.97e-13 | 72 |
presumptive paraxial mesoderm | 5.97e-13 | 72 |
dense mesenchyme tissue | 1.20e-12 | 73 |
skin of body | 1.56e-12 | 41 |
multilaminar epithelium | 1.89e-12 | 83 |
epithelial vesicle | 2.97e-11 | 78 |
surface structure | 4.98e-11 | 99 |
skeletal muscle tissue | 5.38e-11 | 62 |
striated muscle tissue | 5.38e-11 | 62 |
myotome | 5.38e-11 | 62 |
muscle tissue | 2.05e-10 | 64 |
musculature | 2.05e-10 | 64 |
musculature of body | 2.05e-10 | 64 |
artery | 8.26e-09 | 42 |
arterial blood vessel | 8.26e-09 | 42 |
arterial system | 8.26e-09 | 42 |
connective tissue | 1.79e-08 | 371 |
right ovary | 3.68e-08 | 5 |
systemic artery | 8.56e-08 | 33 |
systemic arterial system | 8.56e-08 | 33 |
thoracic segment blood vessel | 2.06e-07 | 5 |
subclavian artery | 2.06e-07 | 5 |
female gonad | 4.26e-07 | 13 |
trunk mesenchyme | 8.48e-07 | 122 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 4.23e-12 | 14 |
musculoskeletal system disease | 4.99e-08 | 5 |
myotonic disease | 4.99e-08 | 5 |
muscle tissue disease | 4.99e-08 | 5 |
myopathy | 4.99e-08 | 5 |
muscular disease | 4.99e-08 | 5 |
myotonic dystrophy | 4.99e-08 | 5 |