FFCP PHASE1:Hg19::chr18:40190226..40190230,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr18:40190226..40190230,+
|short_description=p@chr18:40190226..40190230,+
|description=CAGE_peak_at_chr18:40190226..40190230,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr18:40190226..40190230,+ | |||
|coexpression_cluster_id=C87 | |||
|description=CAGE_peak_at_chr18:40190226..40190230,+ | |||
|id=chr18:40190226..40190230,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002535;1.65e-12;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,1.65e-12,2 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.26e-30;3!UBERON:0005425;1.67e-23;1!UBERON:0006238;4.90e-09;10!UBERON:0006215;1.26e-08;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3093;2.33e-08;11!DOID:5409;8.85e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:3093,2.29e-08,11;DOID:5409,7.70e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0004732!1.11e-22!13;UBERON:0004733!8.01e-20!12;UBERON:0002028!8.01e-20!12;UBERON:0007277!8.01e-20!12;UBERON:0003076!1.73e-15!15;UBERON:0003057!1.73e-15!15;UBERON:0002298!2.44e-13!8;UBERON:0000073!3.50e-12!94;UBERON:0001016!3.50e-12!94;UBERON:0002680!3.54e-12!9;UBERON:0001895!3.54e-12!9;UBERON:0010092!3.54e-12!9;UBERON:0001049!5.04e-11!57;UBERON:0005068!5.04e-11!57;UBERON:0006241!5.04e-11!57;UBERON:0007135!5.04e-11!57;UBERON:0000955!6.71e-11!69;UBERON:0006238!6.71e-11!69;UBERON:0001017!6.73e-11!82;UBERON:0002346!1.03e-10!90;UBERON:0002616!1.61e-10!59;UBERON:0003075!3.25e-10!86;UBERON:0007284!3.25e-10!86;UBERON:0005743!3.62e-10!86;UBERON:0001896!3.98e-10!3;UBERON:0005290!3.98e-10!3;UBERON:0010096!3.98e-10!3;UBERON:0000988!1.30e-09!3;UBERON:0002148!2.80e-07!2;UBERON:0009662!2.80e-07!2;UBERON:0007023!3.17e-07!115;UBERON:0005162!4.59e-07!2;UBERON:0000122!4.59e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.67e-23;1!UBERON:0001785;1.67e-23;1!UBERON:0002464;1.67e-23;1!UBERON:0004904;1.67e-23;1!UBERON:0001021;1.67e-23;1!UBERON:0006955;1.65e-12;2!UBERON:0004801;1.65e-12;2!UBERON:0003714;1.85e-12;2!UBERON:0005162;1.85e-12;2!UBERON:0000122;1.85e-12;2!UBERON:0004732;9.35e-08;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.67e-23,1;UBERON:0001785,1.67e-23,1;UBERON:0002464,1.67e-23,1;UBERON:0004904,1.67e-23,1;UBERON:0001021,1.67e-23,1;UBERON:0003902,1.67e-23,1;UBERON:0005425,1.67e-23,1;UBERON:0000966,7.23e-16,6;UBERON:0005388,7.23e-16,6;UBERON:0001802,7.23e-16,6;UBERON:0006955,1.65e-12,2;UBERON:0004801,1.65e-12,2;UBERON:0003714,1.85e-12,2;UBERON:0005162,1.85e-12,2;UBERON:0000122,1.85e-12,2;UBERON:0004732,8.89e-08,13;UBERON:0001781,7.27e-07,4 | |||
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| ||
|short_description=p@chr18:40190226..40190230,+ | |||
}} | }} |
Latest revision as of 00:53, 26 July 2015
Short description: | p@chr18:40190226..40190230, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:40190226..40190230, + |
Coexpression cluster: | C87_retinoblastoma_left_nonsmall_heart_small_diaphragm_bronchogenic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 1.65e-12 | 2 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.67e-23 | 1 |
cranial nerve | 1.67e-23 | 1 |
nerve trunk | 1.67e-23 | 1 |
nerve connecting eye with brain | 1.67e-23 | 1 |
nerve | 1.67e-23 | 1 |
retinal neural layer | 1.67e-23 | 1 |
presumptive neural retina | 1.67e-23 | 1 |
retina | 7.23e-16 | 6 |
photoreceptor array | 7.23e-16 | 6 |
posterior segment of eyeball | 7.23e-16 | 6 |
uterine epithelium | 1.65e-12 | 2 |
cervix epithelium | 1.65e-12 | 2 |
neural tissue | 1.85e-12 | 2 |
multi cell component structure | 1.85e-12 | 2 |
neuron projection bundle | 1.85e-12 | 2 |
segmental subdivision of nervous system | 8.89e-08 | 13 |
layer of retina | 7.27e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
nervous system cancer | 2.29e-08 | 11 |
lung small cell carcinoma | 7.70e-07 | 4 |