FFCP PHASE1:Hg19::chr5:140887716..140887759,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:140887716..140887759,+ | |||
|description=CAGE_peak_at_chr5:140887716..140887759,+ | |description=CAGE_peak_at_chr5:140887716..140887759,+ | ||
|id=chr5:140887716..140887759,+ | |id=chr5:140887716..140887759,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.77e-37!180;CL:0000057!7.54e-21!75;CL:0000183!8.02e-14!59;CL:0000680!5.25e-13!57;CL:0000056!5.25e-13!57;CL:0000355!5.25e-13!57;CL:0000187!7.79e-12!54;CL:0000393!4.00e-09!60;CL:0000211!4.00e-09!60;CL:0000048!4.23e-08!430;CL:0000723!2.47e-07!436;CL:0000192!3.20e-07!42;CL:0000514!3.20e-07!42;CL:0000499!6.04e-07!27;CL:0000034!6.22e-07!444;CL:0002620!6.69e-07!23 | |ontology_enrichment_celltype=CL:0000055!2.77e-37!180;CL:0000057!7.54e-21!75;CL:0000183!8.02e-14!59;CL:0000680!5.25e-13!57;CL:0000056!5.25e-13!57;CL:0000355!5.25e-13!57;CL:0000187!7.79e-12!54;CL:0000393!4.00e-09!60;CL:0000211!4.00e-09!60;CL:0000048!4.23e-08!430;CL:0000723!2.47e-07!436;CL:0000192!3.20e-07!42;CL:0000514!3.20e-07!42;CL:0000499!6.04e-07!27;CL:0000034!6.22e-07!444;CL:0002620!6.69e-07!23 | ||
|ontology_enrichment_celltype_v019=CL:0000499;1.20e-09;28!CL:0000327;2.24e-08;15!CL:0002320;4.83e-08;188!CL:0000723;9.26e-08;61!CL:0000134;1.40e-07;55!CL:0002540;2.21e-07;6!CL:0000057;2.74e-07;73!CL:0000680;5.96e-07;7!CL:0000153;7.35e-07;9!CL:0000447;7.35e-07;9!CL:0002556;7.98e-07;6!CL:0000048;9.70e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.52e-19,76;CL:0000048,3.29e-14,427;CL:0000723,1.69e-13,433;CL:0000034,1.37e-12,441;CL:0002320,2.57e-10,361;CL:0000680,6.13e-10,58;CL:0000056,6.13e-10,58;CL:0000355,6.13e-10,58;CL:0000499,1.26e-09,28;CL:0000187,1.49e-08,55;CL:0000327,1.67e-08,15;CL:0000219,9.28e-08,386;CL:0000134,1.45e-07,354;CL:0002540,1.90e-07,6;CL:0000393,5.92e-07,61;CL:0000211,5.92e-07,61;CL:0000153,6.87e-07,9;CL:0000447,6.87e-07,9;CL:0002556,9.16e-07,6 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!9.46e-19!83;UBERON:0002329!9.46e-19!83;UBERON:0003077!9.46e-19!83;UBERON:0003059!9.46e-19!83;UBERON:0007282!9.46e-19!83;UBERON:0009618!9.46e-19!83;UBERON:0007285!9.46e-19!83;UBERON:0004290!3.79e-15!70;UBERON:0005256!3.73e-14!143;UBERON:0000486!3.21e-12!82;UBERON:0002385!4.16e-12!63;UBERON:0001015!4.16e-12!63;UBERON:0000383!4.16e-12!63;UBERON:0001134!9.80e-12!61;UBERON:0002036!9.80e-12!61;UBERON:0003082!9.80e-12!61;UBERON:0000475!2.47e-11!365;UBERON:0002100!1.58e-08!216;UBERON:0000481!1.49e-07!347;UBERON:0003102!1.59e-07!95 | |||
|ontology_enrichment_uberon_v019=UBERON:0001434;6.01e-11;36!UBERON:0002384;4.36e-09;198!UBERON:0000075;5.04e-09;16!UBERON:0002204;7.20e-09;70!UBERON:0004905;1.08e-08;8!UBERON:0000982;1.08e-08;8!UBERON:0004770;1.08e-08;8!UBERON:0004765;1.83e-08;26!UBERON:0011135;9.53e-08;5!UBERON:0002216;9.53e-08;5!UBERON:0011134;9.53e-08;5!UBERON:0002209;9.53e-08;5!UBERON:0002213;9.53e-08;5!UBERON:0007844;9.53e-08;5!UBERON:0011138;9.53e-08;5!UBERON:0001130;9.53e-08;5!UBERON:0001066;9.53e-08;5!UBERON:0001468;9.53e-08;5!UBERON:0001758;7.98e-07;6!UBERON:0003672;7.98e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,3.96e-11,73;UBERON:0002329,4.38e-11,71;UBERON:0003059,4.38e-11,71;UBERON:0007282,4.38e-11,71;UBERON:0004290,4.38e-11,71;UBERON:0009618,4.38e-11,71;UBERON:0002384,5.65e-11,371;UBERON:0003077,8.85e-11,72;UBERON:0007285,8.85e-11,72;UBERON:0007503,1.65e-10,78;UBERON:0000486,1.19e-09,83;UBERON:0005256,6.96e-09,122;UBERON:0000075,7.40e-09,16;UBERON:0001134,1.01e-08,62;UBERON:0002036,1.01e-08,62;UBERON:0003082,1.01e-08,62;UBERON:0004905,1.10e-08,8;UBERON:0000982,1.10e-08,8;UBERON:0004770,1.10e-08,8;UBERON:0003102,1.72e-08,99;UBERON:0003104,2.12e-08,160;UBERON:0009142,2.12e-08,160;UBERON:0002385,3.50e-08,64;UBERON:0001015,3.50e-08,64;UBERON:0000383,3.50e-08,64;UBERON:0011135,9.72e-08,5;UBERON:0002216,9.72e-08,5;UBERON:0011134,9.72e-08,5;UBERON:0002209,9.72e-08,5;UBERON:0002213,9.72e-08,5;UBERON:0005856,9.72e-08,5;UBERON:0005866,9.72e-08,5;UBERON:0005863,9.72e-08,5;UBERON:0007844,9.72e-08,5;UBERON:0011138,9.72e-08,5;UBERON:0001130,9.72e-08,5;UBERON:0001066,9.72e-08,5;UBERON:0001468,9.72e-08,5;UBERON:0002204,6.16e-07,167;UBERON:0011137,8.48e-07,14;UBERON:0001758,9.16e-07,6;UBERON:0003672,9.16e-07,6 | |||
|phase1_expression=0.181678379270557,0.856402095563933,0.563817616383885,1.0007329835313,0.893922188854576,0.872338524100369,0,1.89515962028049,2.35067065379855,0.491467873003018,0,0,0,26.9810649452902,27.505982185417,0.672325146451775,0.602694528023977,0,0,1.47745269692145,4.28401451612931,1.25381888591235,0,0.136874425072884,0,0.229240217243854,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,4.69490601792545,0.383587685530591,9.03597880961416,14.5387994084408,19.2645870217896,2.3858578411533,4.86634870302636,0,0.443458794925128,0.175669571386252,0.196468613246569,0,0,0,0,0,0,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367663080345869,0,0,0,0,0,0,0,0,0,0,1.49091585508596,0.379891534993739,1.05927344650575,1.72101972449288,3.19201543978521,2.24271040056923,0,0.24666754841716,6.22422070799533,0.67355336034844,0.653847612453835,3.17850598054356,1.72852777344,1.64025002283658,5.61888138294577,3.4228309292667,3.28787097213962,0.939475989150119,0.809364721840658,0.280901613404497,8.9827835352153,3.19369225010597,23.351626545723,2.37600571456411,1.97813543422845,9.10161361938026,3.59309070908119,2.35670559535693,2.25213335769535,1.38532057742091,7.46261955497424,6.12975591598039,6.00952235626387,0.340296549480063,0.179389635688862,2.77624605464138,3.39091041855299,0,2.06105058476878,1.54584324027377,3.35010341396862,0.168776332241266,0.974370051611986,0.757301322732344,3.22174645248048,6.7891343863901,0,1.41052937518696,2.03472710772585,0,0,0,0,0,0.116193942869518,0.207322110030741,0,0,1.56449532329816,9.64861407289328,1.38134921352481,2.3218396401599,16.6032280784005,0,0,0,0,0,0,0,0,0,0,0,2.4694440679884,2.94017422771084,1.26755034821831,0,0.590789906681404,0,0,0.514703430895577,0,0,0,0,1.95484983186195,4.15973914111831,1.44331342025273,0.579652024875384,0.469634776943287,0,0,0,0,0,0,0,0.148631162288728,0,0.16798212819886,0,0,0,0.766765358330422,0,0,0,0,0.25248486685276,0.063497894292169,0.763976851116555,0,0,0.205654985406647,0,0,4.26098120512371,0,3.74025257686845,0.129271715757778,89.4141114629706,0.845302752556,0,0,5.40135485950498,1.41849132023278,2.93064396917709,1.85871391755592,5.42621605391443,0,2.60588947434988,1.42156779497018,0,2.41151501647669,0.871533458600294,0.299918973546171,0,0,0,0.958499421966331,0,8.5582143024431,1.01346914667305,3.28762116080613,1.79060963239896,0,0,0,0,0,0,0,0,0,0,0,0,23.1886919349174,23.5080144898048,11.1218659716892,0.831883446123229,1.96271887676878,0,2.10854546986884,2.10662269809403,2.27407504055985,5.17365356462525,0.664225598535437,1.65932251687533,1.21637060255316,19.5801157462741,7.20601190002797,0,0,0,0,0,0,1.48864684691266,0.153461973288062,0.561320188866147,1.15325234330131,1.53512174720011,0.482561763430822,0,0.154209693802656,1.77561725313127,0.492762936082855,2.07701771673448,1.04589340613963,0,0,0,1.60740227430449,1.0925470080403,2.09799063935079,0,0,0.784349769176855,1.46139224653261,0,0,0.170093705276516,0,0,1.89662506280697,1.50506932156456,0,0,0.223874754722178,0,0,0,0,0.325378394664303,0.515205058238611,0.732555718546747,1.15513299888823,0,0,4.82051789532479,1.7400729292582,1.84858340537573,1.68854042198743,0.689182862422653,4.83391101907231,3.0453505721988,1.96021243057032,0.801288320820636,0,0,0,0,0.464845549297286,0.62962469366128,2.0911118104818,0.616067160352178,3.72614221221915,0,1.11194531462352,0.429374660225974,2.232950216158,2.53103539774981,0.953150969619124,2.303080121802,4.2793898803392,4.45484547096312,0.78494864019923,2.15846949099978,3.84351841630477,2.00281083987667,1.2130948894399,0,0,1.95053495635836,0.487426979262569,0,0.272999822815972,4.24216295861138,9.04064932961942,0.551365343546124,1.99031692572366,0,9.83918408253369,5.24715801637306,0,0.30982349809975,1.12678241012897,0.286822704408103,0.392996164052485,0,1.06428319221179,24.2773780592314,30.6244250452709,6.07157078025144,12.9475846490644,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0.213648142254946,0,0,0,0.28853842595289,0,0,0,0,0,0,0,7.53174440809534,0,0,0,0.321176150207399,0,0,0,0.307240764308458,0.671028323677248,0.500547425135725,0,0,0,0,0,0,0,2.3441308683503,0,0,0,0,0,0,0,0.281338832821026,0,0,0,1.59398390600856,0,0,0,0,1.24415835064723,0,0,0.511572370226872,1.08507746200627,0,4.44547960578548,0,0,0,0,0,2.17499872630438,0,0,0,0,0,0.173624994933292,0.885741385813839,0.241192877250816,0,0.442317039724898,0,0,0,0,1.15425387755696,2.27884111694002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.796118080530053,0.611030144933625,0,0,0,0,0,0,0,0,0,0.789168805698781,0,0.61214552326098,4.10712767585172,0,0,0,0,0,0,0,0.138674673013139,0,0,0,1.39781334593624,0.171986032471617,0,0,0,1.64881328030313,0,1.35588444468319,1.50746117111426,0.397429223405979,0.189932387867636,0,0,0.426905989478705,0,0,0,0,0,0,0,2.98989253361951,2.196659772559,3.36594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| ||
|short_description=p@chr5:140887716..140887759,+ | |short_description=p@chr5:140887716..140887759,+ | ||
}} | }} |
Latest revision as of 10:42, 30 July 2015
Short description: | p@chr5:140887716..140887759, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:140887716..140887759, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.52e-19 | 76 |
multi fate stem cell | 3.29e-14 | 427 |
somatic stem cell | 1.69e-13 | 433 |
stem cell | 1.37e-12 | 441 |
connective tissue cell | 2.57e-10 | 361 |
muscle precursor cell | 6.13e-10 | 58 |
myoblast | 6.13e-10 | 58 |
multi-potent skeletal muscle stem cell | 6.13e-10 | 58 |
stromal cell | 1.26e-09 | 28 |
muscle cell | 1.49e-08 | 55 |
extracellular matrix secreting cell | 1.67e-08 | 15 |
motile cell | 9.28e-08 | 386 |
mesenchymal cell | 1.45e-07 | 354 |
mesenchymal stem cell of the bone marrow | 1.90e-07 | 6 |
electrically responsive cell | 5.92e-07 | 61 |
electrically active cell | 5.92e-07 | 61 |
GAG secreting cell | 6.87e-07 | 9 |
carbohydrate secreting cell | 6.87e-07 | 9 |
fibroblast of periodontium | 9.16e-07 | 6 |