FFCP PHASE1:Hg19::chr7:31855776..31855807,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:31855776..31855807,- | |||
|coexpression_cluster_id=C254 | |coexpression_cluster_id=C254 | ||
|description=CAGE_peak_at_chr7:31855776..31855807,- | |description=CAGE_peak_at_chr7:31855776..31855807,- | ||
|id=chr7:31855776..31855807,- | |id=chr7:31855776..31855807,- | ||
|ontology_enrichment_celltype=CL:0002139!5.32e-33!24;CL:0000115!6.65e-25!35;CL:0000071!1.82e-22!18;CL:0002546!1.82e-22!18;CL:0002078!8.53e-22!44;CL:0000213!1.34e-20!57;CL:0000215!1.34e-20!57;CL:0002618!4.67e-14!3;CL:0005020!2.28e-12!6;CL:0002138!2.28e-12!6;CL:0005022!2.28e-12!6;CL:0000076!2.73e-12!62;CL:0002543!5.53e-12!6;CL:0000222!4.02e-11!119;CL:1000413!6.51e-08!9;CL:0002144!7.75e-07!3 | |ontology_enrichment_celltype=CL:0002139!5.32e-33!24;CL:0000115!6.65e-25!35;CL:0000071!1.82e-22!18;CL:0002546!1.82e-22!18;CL:0002078!8.53e-22!44;CL:0000213!1.34e-20!57;CL:0000215!1.34e-20!57;CL:0002618!4.67e-14!3;CL:0005020!2.28e-12!6;CL:0002138!2.28e-12!6;CL:0005022!2.28e-12!6;CL:0000076!2.73e-12!62;CL:0002543!5.53e-12!6;CL:0000222!4.02e-11!119;CL:1000413!6.51e-08!9;CL:0002144!7.75e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002139;1.23e-30;24!CL:0002138;9.86e-24;6!CL:0002618;4.45e-21;3!CL:0000115;1.46e-14;36!CL:0000071;8.50e-14;18!CL:0000213;2.65e-11;58!CL:0000215;2.65e-11;58!CL:0002543;4.84e-11;6!CL:0002078;8.72e-11;45 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,1.18e-30,24;CL:0005020,7.83e-24,6;CL:0002138,7.83e-24,6;CL:0005022,7.83e-24,6;CL:0002618,4.94e-21,3;CL:0000115,2.46e-20,36;CL:0000213,3.03e-16,58;CL:0000215,3.03e-16,58;CL:0002078,3.40e-16,45;CL:0000071,9.09e-14,18;CL:0002546,9.09e-14,18;CL:0002543,5.09e-11,6;CL:0000222,1.99e-09,121;CL:0000076,1.97e-08,63 | |||
|ontology_enrichment_development_v019=CL:0005022;9.86e-24;6!UBERON:0005425;1.93e-16;1!CL:0002546;8.50e-14;18 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!1.82e-22!18;UBERON:0004638!1.82e-22!18;UBERON:0004852!1.82e-22!18;UBERON:0006914!7.32e-19!25;UBERON:0000487!5.14e-18!22;UBERON:0000055!2.30e-14!69;UBERON:0004111!1.31e-12!241;UBERON:0000477!3.79e-12!286;UBERON:0002049!4.84e-12!79;UBERON:0007798!4.84e-12!79;UBERON:0000025!2.48e-11!194;UBERON:0001981!2.03e-09!60;UBERON:0007500!2.03e-09!60;UBERON:0004537!2.03e-09!60;UBERON:0006965!2.03e-09!60;UBERON:0005162!2.31e-09!2;UBERON:0000122!2.31e-09!2;UBERON:0001473!2.79e-09!8;UBERON:0004536!2.79e-09!8;UBERON:0006558!2.79e-09!8;UBERON:0002066!1.32e-08!5;UBERON:0001638!5.32e-08!9;UBERON:0003920!5.32e-08!9;UBERON:0004582!5.32e-08!9;UBERON:0003915!6.51e-08!9;UBERON:0004700!6.51e-08!9;UBERON:0001917!6.51e-08!9;UBERON:0004535!1.43e-07!110;UBERON:0002465!2.01e-07!10;UBERON:0001009!2.84e-07!113;UBERON:0002420!3.14e-07!9;UBERON:0007245!3.14e-07!9;UBERON:0010009!3.14e-07!9;UBERON:0010011!3.14e-07!9;UBERON:0000454!3.14e-07!9;UBERON:0002308!3.25e-07!9;UBERON:0000125!3.25e-07!9;UBERON:0004872!5.29e-07!84;UBERON:0001915!7.75e-07!3;UBERON:0001982!7.75e-07!3 | |ontology_enrichment_uberon=UBERON:0001986!1.82e-22!18;UBERON:0004638!1.82e-22!18;UBERON:0004852!1.82e-22!18;UBERON:0006914!7.32e-19!25;UBERON:0000487!5.14e-18!22;UBERON:0000055!2.30e-14!69;UBERON:0004111!1.31e-12!241;UBERON:0000477!3.79e-12!286;UBERON:0002049!4.84e-12!79;UBERON:0007798!4.84e-12!79;UBERON:0000025!2.48e-11!194;UBERON:0001981!2.03e-09!60;UBERON:0007500!2.03e-09!60;UBERON:0004537!2.03e-09!60;UBERON:0006965!2.03e-09!60;UBERON:0005162!2.31e-09!2;UBERON:0000122!2.31e-09!2;UBERON:0001473!2.79e-09!8;UBERON:0004536!2.79e-09!8;UBERON:0006558!2.79e-09!8;UBERON:0002066!1.32e-08!5;UBERON:0001638!5.32e-08!9;UBERON:0003920!5.32e-08!9;UBERON:0004582!5.32e-08!9;UBERON:0003915!6.51e-08!9;UBERON:0004700!6.51e-08!9;UBERON:0001917!6.51e-08!9;UBERON:0004535!1.43e-07!110;UBERON:0002465!2.01e-07!10;UBERON:0001009!2.84e-07!113;UBERON:0002420!3.14e-07!9;UBERON:0007245!3.14e-07!9;UBERON:0010009!3.14e-07!9;UBERON:0010011!3.14e-07!9;UBERON:0000454!3.14e-07!9;UBERON:0002308!3.25e-07!9;UBERON:0000125!3.25e-07!9;UBERON:0004872!5.29e-07!84;UBERON:0001915!7.75e-07!3;UBERON:0001982!7.75e-07!3 | ||
|ontology_enrichment_uberon_v019=UBERON:0001473;5.57e-18;8!UBERON:0004536;5.57e-18;8!UBERON:0006558;5.57e-18;8!UBERON:0000941;1.93e-16;1!UBERON:0001785;1.93e-16;1!UBERON:0002464;1.93e-16;1!UBERON:0004904;1.93e-16;1!UBERON:0001021;1.93e-16;1!UBERON:0002465;1.61e-14;10!UBERON:0004638;8.50e-14;18!UBERON:0001986;8.50e-14;18!UBERON:0004852;8.50e-14;18!UBERON:0002066;4.66e-13;5!UBERON:0000487;2.40e-11;22!UBERON:0006914;5.09e-10;25!UBERON:0000055;2.12e-09;65!UBERON:0003714;6.93e-09;2!UBERON:0005162;6.93e-09;2!UBERON:0000122;6.93e-09;2!UBERON:0001638;1.16e-07;9!UBERON:0010260;1.16e-07;9!UBERON:0003920;1.16e-07;9!UBERON:0004582;1.16e-07;9!UBERON:0002049;1.51e-07;75!UBERON:0007798;1.51e-07;75!UBERON:0000490;4.42e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001473,4.69e-18,8;UBERON:0004536,4.69e-18,8;UBERON:0006558,4.69e-18,8;UBERON:0000941,1.93e-16,1;UBERON:0001785,1.93e-16,1;UBERON:0002464,1.93e-16,1;UBERON:0004904,1.93e-16,1;UBERON:0001021,1.93e-16,1;UBERON:0003902,1.93e-16,1;UBERON:0005425,1.93e-16,1;UBERON:0002465,1.41e-14,10;UBERON:0004638,9.09e-14,18;UBERON:0001986,9.09e-14,18;UBERON:0004852,9.09e-14,18;UBERON:0000055,9.77e-14,68;UBERON:0002066,4.96e-13,5;UBERON:0002049,6.79e-12,78;UBERON:0007798,6.79e-12,78;UBERON:0000487,2.53e-11,22;UBERON:0006914,5.34e-10,25;UBERON:0003714,6.94e-09,2;UBERON:0005162,6.94e-09,2;UBERON:0000122,6.94e-09,2;UBERON:0004535,2.56e-08,109;UBERON:0001009,4.47e-08,112;UBERON:0001638,1.20e-07,9;UBERON:0010260,1.20e-07,9;UBERON:0003920,1.20e-07,9;UBERON:0004582,1.20e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,1.25396979922086,1.8089173141853,8.89415656716776,5.35552980423472,0.402829317109147,2.28081631715554,0,0.735326160691737,0,1.7859945656816,1.12264686313085,0.563057402416611,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.63337622438398,0,0,0,0,0,0,3.77447074818773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15149118391667,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17388295717181,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.655087670040387,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0,14.0151566384007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.347140501607594,0,0.419499436209906,0,1.25396979922086,1.8089173141853,8.89415656716776,5.35552980423472,0.402829317109147,2.28081631715554,0,0.735326160691737,0,1.7859945656816,1.12264686313085,0.563057402416611,0,0,0.366403487860815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438977620880838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.433099343283221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,0,0,0,0,0,1.58510321173008,0,0,0,0,0,0,0,0,0,0.438450885253763,0,0,0,0,0,0,0,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140669416410513,0,0,0.63337622438398,0,0,0,0,0,0,3.77447074818773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0633107959558787,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15149118391667,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.17388295717181,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0.655087670040387,0,0,0,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0.177404740325278,0,0,0,0,0,14.0151566384007,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169927114687817,0,0,0,0,0,0.0802413666891683,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829169439458779,0,0.213233981900981,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr7:31855776..31855807,- | |short_description=p@chr7:31855776..31855807,- | ||
}} | }} |
Latest revision as of 09:28, 31 July 2015
Short description: | p@chr7:31855776..31855807, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:31855776..31855807, - |
Coexpression cluster: | C254_prostate_rhabdomyosarcoma_seminal_Fibroblast_transitionalcell_Smooth_Iris |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 1.18e-30 | 24 |
lymphangioblast | 7.83e-24 | 6 |
endothelial cell of lymphatic vessel | 7.83e-24 | 6 |
vascular lymphangioblast | 7.83e-24 | 6 |
endothelial cell of umbilical vein | 4.94e-21 | 3 |
endothelial cell | 2.46e-20 | 36 |
lining cell | 3.03e-16 | 58 |
barrier cell | 3.03e-16 | 58 |
meso-epithelial cell | 3.40e-16 | 45 |
blood vessel endothelial cell | 9.09e-14 | 18 |
embryonic blood vessel endothelial progenitor cell | 9.09e-14 | 18 |
vein endothelial cell | 5.09e-11 | 6 |
mesodermal cell | 1.99e-09 | 121 |
squamous epithelial cell | 1.97e-08 | 63 |
Ontology term | p-value | n |
---|---|---|
lymphatic vessel | 4.69e-18 | 8 |
lymph vasculature | 4.69e-18 | 8 |
lymphatic part of lymphoid system | 4.69e-18 | 8 |
cranial nerve II | 1.93e-16 | 1 |
cranial nerve | 1.93e-16 | 1 |
nerve trunk | 1.93e-16 | 1 |
nerve connecting eye with brain | 1.93e-16 | 1 |
nerve | 1.93e-16 | 1 |
retinal neural layer | 1.93e-16 | 1 |
presumptive neural retina | 1.93e-16 | 1 |
lymphoid system | 1.41e-14 | 10 |
blood vessel endothelium | 9.09e-14 | 18 |
endothelium | 9.09e-14 | 18 |
cardiovascular system endothelium | 9.09e-14 | 18 |
vessel | 9.77e-14 | 68 |
umbilical vein | 4.96e-13 | 5 |
vasculature | 6.79e-12 | 78 |
vascular system | 6.79e-12 | 78 |
simple squamous epithelium | 2.53e-11 | 22 |
squamous epithelium | 5.34e-10 | 25 |
neural tissue | 6.94e-09 | 2 |
multi cell component structure | 6.94e-09 | 2 |
neuron projection bundle | 6.94e-09 | 2 |
cardiovascular system | 2.56e-08 | 109 |
circulatory system | 4.47e-08 | 112 |
vein | 1.20e-07 | 9 |
umbilical blood vessel | 1.20e-07 | 9 |
venous blood vessel | 1.20e-07 | 9 |
venous system | 1.20e-07 | 9 |