FFCP PHASE1:Mm9::chr5:38550646..38550693,-: Difference between revisions
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{{FFCP|EntrezGene=18196|HGNC=|MCL_coexpression_id=13|UniProt=Q62092|association_with_transcript=12bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end|description=CAGE_peak_2_at_Nsg1_5end|id=chr5:38550646..38550693,-|ontology_enrichment_celltype=CL:0000393!7.99e-18!39;CL:0000211!7.99e-18!39;CL:0000540!2.46e-17!33;CL:0000047!2.46e-17!33;CL:0000031!2.46e-17!33;CL:0000404!2.46e-17!33;CL:0000055!4.25e-16!50;CL:0002319!7.29e-16!43;CL:0000117!9.57e-16!23;CL:0000337!9.57e-16!23;CL:0000221!1.40e-15!44;CL:0000133!1.40e-15!44|ontology_enrichment_celltype_v019_2=CL:0000393,2.05e-18,39;CL:0000211,2.05e-18,39;CL:0000540,6.57e-18,33;CL:0000047,6.57e-18,33;CL:0000031,6.57e-18,33;CL:0000404,6.57e-18,33;CL:0000117,2.92e-16,23;CL:0000337,2.92e-16,23;CL:0002319,3.90e-16,43;CL:0000221,7.61e-16,44;CL:0000133,7.61e-16,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.46e-32!73;UBERON:0005743!4.46e-32!73;UBERON:0000073!7.99e-31!75;UBERON:0001016!7.99e-31!75;UBERON:0002346!2.17e-27!71;UBERON:0003075!2.17e-27!71;UBERON:0007284!2.17e-27!71;UBERON:0004121!1.82e-26!102;UBERON:0000924!1.82e-26!102;UBERON:0006601!1.82e-26!102;UBERON:0001049!8.03e-25!52;UBERON:0005068!8.03e-25!52;UBERON:0006241!8.03e-25!52;UBERON:0007135!8.03e-25!52;UBERON:0000955!5.53e-23!50;UBERON:0006238!5.53e-23!50;UBERON:0002616!1.75e-22!49;UBERON:0000033!1.16e-21!63;UBERON:0002020!8.22e-20!34;UBERON:0003056!6.97e-19!49;UBERON:0003080!2.72e-18!40;UBERON:0002780!9.83e-18!39;UBERON:0001890!9.83e-18!39;UBERON:0006240!9.83e-18!39;UBERON:0002791!2.32e-16!29;UBERON:0003528!2.32e-16!29;UBERON:0001893!2.32e-16!29;UBERON:0000956!2.93e-11!21;UBERON:0001869!2.93e-11!21;UBERON:0000203!2.93e-11!21;UBERON:0007811!3.83e-10!86;UBERON:0000153!4.19e-10!94;UBERON:0002619!4.78e-09!17;UBERON:0003076!4.10e-07!12;UBERON:0003057!4.10e-07!12;UBERON:0000025!8.98e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.43e-33,73;UBERON:0001016,1.31e-31,75;UBERON:0002346,1.44e-27,64;UBERON:0003075,1.44e-27,64;UBERON:0007284,1.44e-27,64;UBERON:0000073,5.20e-27,54;UBERON:0001049,1.14e-25,52;UBERON:0005068,1.14e-25,52;UBERON:0006241,1.14e-25,52;UBERON:0007135,1.14e-25,52;UBERON:0004121,3.57e-25,95;UBERON:0000924,3.57e-25,95;UBERON:0006601,3.57e-25,95;UBERON:0000955,6.62e-22,47;UBERON:0006238,6.62e-22,47;UBERON:0010371,1.34e-21,73;UBERON:0002616,2.13e-21,46;UBERON:0002020,1.78e-20,34;UBERON:0003056,1.63e-19,49;UBERON:0003080,6.71e-19,40;UBERON:0010314,8.41e-19,92;UBERON:0002780,2.54e-18,39;UBERON:0001890,2.54e-18,39;UBERON:0006240,2.54e-18,39;UBERON:0003528,6.72e-17,29;UBERON:0002791,6.72e-17,29;UBERON:0001893,6.72e-17,29;UBERON:0000956,1.30e-11,21;UBERON:0001869,1.30e-11,21;UBERON:0000203,1.30e-11,21;UBERON:0002619,2.55e-09,17;UBERON:0003076,2.57e-07,12;UBERON:0003057,2.57e-07,12|phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,15.3077922271926,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,17.2478640626541,16.7271936512199,35.9751634236896,9.38869613217647,9.3750817243592,12.5221124158649,6.80504646759992,12.1788186814065,2.87505128729943,0,0,0,9.51859913333004,4.58453503902011,4.64104883049698,145.66785181891,157.110320843794,176.838961578224,13.2149367506962,8.89294796111139,8.99899717281399,6.92206453796882,7.104801149461,8.38880309451533,9.98967593836042,97.3645459576605,118.805225731888,117.361328434071,151.109370749612,160.571429271823,137.312185919963,122.586357432324,147.075005857603,57.2602581196821,101.128371763469,93.5463787530523,154.834501795248,178.858343242711,158.357664649255,120.048689570594,117.054622886589,90.150966188318,131.993606292203,154.473273667027,140.358782706451,0.681535739998656,2.34271836331035,0.289864488701678,0.860423876981386,0,0,0,0,4.35377702408431,9.88495870952735,11.950156211732,9.18682893726885,3.23939865486365,10.2661181931454,2.54805239706646,7.11066703153331,0,0,0.505524445014783,2.62622923353838,0.258937883647172,6.97678053604676,12.3174582003956,14.6143429589828,8.76338889573022,15.5244319769201,13.4051126134703,4.27266410520897,0.494389935468748,0.289198713839823,1.76922110389975,3.558870698843,0.441683036920787,2.42437626567611,0,92.2259510586373,105.770586940795,0.510914110417183,0.239630249011841,0,0.127070227073065,74.2961571447921,66.3375874087008,220.397733605964,56.6667283826821,44.7502050328078,83.115217823824,79.660460166269,4.78645010096487,1.8661045591514,0,2.52530227063769,7.026503919986,13.5642241615749,11.7040384373477,14.3169576943929,15.3082123090488,13.9643955110486,15.2733811032358,9.05461797586555,8.191583731448,9.45530400839096,10.7330185740009,8.98702502953057,7.22922847986555,2.43776516565517,2.67516777330327,4.57778813682534,0,0,0,1.86413195281952,2.57978665979206,1.2604344302271,2.84093682702252,0.787056926989615,0.925602677324269,0.697601834251224,1.07309360559848,0.934122738937356,1.31647879930784,2.13417703302824,0.972825714550269,0.438599962275997,1.09775057645525,0.939444931322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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:18196 | |||
|HGNC= | |||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q62092 | |||
|association_with_transcript=12bp_to_ENSMUST00000031009,NM_010942,uc008xga.1_5end | |||
|cluster_id=chr5:38550646..38550693,- | |||
|description=CAGE_peak_2_at_Nsg1_5end | |||
|id=chr5:38550646..38550693,- | |||
|ontology_enrichment_celltype=CL:0000393!7.99e-18!39;CL:0000211!7.99e-18!39;CL:0000540!2.46e-17!33;CL:0000047!2.46e-17!33;CL:0000031!2.46e-17!33;CL:0000404!2.46e-17!33;CL:0000055!4.25e-16!50;CL:0002319!7.29e-16!43;CL:0000117!9.57e-16!23;CL:0000337!9.57e-16!23;CL:0000221!1.40e-15!44;CL:0000133!1.40e-15!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,2.05e-18,39;CL:0000211,2.05e-18,39;CL:0000540,6.57e-18,33;CL:0000047,6.57e-18,33;CL:0000031,6.57e-18,33;CL:0000404,6.57e-18,33;CL:0000117,2.92e-16,23;CL:0000337,2.92e-16,23;CL:0002319,3.90e-16,43;CL:0000221,7.61e-16,44;CL:0000133,7.61e-16,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.46e-32!73;UBERON:0005743!4.46e-32!73;UBERON:0000073!7.99e-31!75;UBERON:0001016!7.99e-31!75;UBERON:0002346!2.17e-27!71;UBERON:0003075!2.17e-27!71;UBERON:0007284!2.17e-27!71;UBERON:0004121!1.82e-26!102;UBERON:0000924!1.82e-26!102;UBERON:0006601!1.82e-26!102;UBERON:0001049!8.03e-25!52;UBERON:0005068!8.03e-25!52;UBERON:0006241!8.03e-25!52;UBERON:0007135!8.03e-25!52;UBERON:0000955!5.53e-23!50;UBERON:0006238!5.53e-23!50;UBERON:0002616!1.75e-22!49;UBERON:0000033!1.16e-21!63;UBERON:0002020!8.22e-20!34;UBERON:0003056!6.97e-19!49;UBERON:0003080!2.72e-18!40;UBERON:0002780!9.83e-18!39;UBERON:0001890!9.83e-18!39;UBERON:0006240!9.83e-18!39;UBERON:0002791!2.32e-16!29;UBERON:0003528!2.32e-16!29;UBERON:0001893!2.32e-16!29;UBERON:0000956!2.93e-11!21;UBERON:0001869!2.93e-11!21;UBERON:0000203!2.93e-11!21;UBERON:0007811!3.83e-10!86;UBERON:0000153!4.19e-10!94;UBERON:0002619!4.78e-09!17;UBERON:0003076!4.10e-07!12;UBERON:0003057!4.10e-07!12;UBERON:0000025!8.98e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.43e-33,73;UBERON:0001016,1.31e-31,75;UBERON:0002346,1.44e-27,64;UBERON:0003075,1.44e-27,64;UBERON:0007284,1.44e-27,64;UBERON:0000073,5.20e-27,54;UBERON:0001049,1.14e-25,52;UBERON:0005068,1.14e-25,52;UBERON:0006241,1.14e-25,52;UBERON:0007135,1.14e-25,52;UBERON:0004121,3.57e-25,95;UBERON:0000924,3.57e-25,95;UBERON:0006601,3.57e-25,95;UBERON:0000955,6.62e-22,47;UBERON:0006238,6.62e-22,47;UBERON:0010371,1.34e-21,73;UBERON:0002616,2.13e-21,46;UBERON:0002020,1.78e-20,34;UBERON:0003056,1.63e-19,49;UBERON:0003080,6.71e-19,40;UBERON:0010314,8.41e-19,92;UBERON:0002780,2.54e-18,39;UBERON:0001890,2.54e-18,39;UBERON:0006240,2.54e-18,39;UBERON:0003528,6.72e-17,29;UBERON:0002791,6.72e-17,29;UBERON:0001893,6.72e-17,29;UBERON:0000956,1.30e-11,21;UBERON:0001869,1.30e-11,21;UBERON:0000203,1.30e-11,21;UBERON:0002619,2.55e-09,17;UBERON:0003076,2.57e-07,12;UBERON:0003057,2.57e-07,12 | |||
|phase1_expression=4.96461426024861,0,0,0,0,0,0,0,0,0.234064526321993,0,0,0,0,0,0.202475267389826,0,0,0,0,15.3077922271926,0,0,0.159992422793407,0,0,0,0,0,0,0,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,17.2478640626541,16.7271936512199,35.9751634236896,9.38869613217647,9.3750817243592,12.5221124158649,6.80504646759992,12.1788186814065,2.87505128729943,0,0,0,9.51859913333004,4.58453503902011,4.64104883049698,145.66785181891,157.110320843794,176.838961578224,13.2149367506962,8.89294796111139,8.99899717281399,6.92206453796882,7.104801149461,8.38880309451533,9.98967593836042,97.3645459576605,118.805225731888,117.361328434071,151.109370749612,160.571429271823,137.312185919963,122.586357432324,147.075005857603,57.2602581196821,101.128371763469,93.5463787530523,154.834501795248,178.858343242711,158.357664649255,120.048689570594,117.054622886589,90.150966188318,131.993606292203,154.473273667027,140.358782706451,0.681535739998656,2.34271836331035,0.289864488701678,0.860423876981386,0,0,0,0,4.35377702408431,9.88495870952735,11.950156211732,9.18682893726885,3.23939865486365,10.2661181931454,2.54805239706646,7.11066703153331,0,0,0.505524445014783,2.62622923353838,0.258937883647172,6.97678053604676,12.3174582003956,14.6143429589828,8.76338889573022,15.5244319769201,13.4051126134703,4.27266410520897,0.494389935468748,0.289198713839823,1.76922110389975,3.558870698843,0.441683036920787,2.42437626567611,0,92.2259510586373,105.770586940795,0.510914110417183,0.239630249011841,0,0.127070227073065,74.2961571447921,66.3375874087008,220.397733605964,56.6667283826821,44.7502050328078,83.115217823824,79.660460166269,4.78645010096487,1.8661045591514,0,2.52530227063769,7.026503919986,13.5642241615749,11.7040384373477,14.3169576943929,15.3082123090488,13.9643955110486,15.2733811032358,9.05461797586555,8.191583731448,9.45530400839096,10.7330185740009,8.98702502953057,7.22922847986555,2.43776516565517,2.67516777330327,4.57778813682534,0,0,0,1.86413195281952,2.57978665979206,1.2604344302271,2.84093682702252,0.787056926989615,0.925602677324269,0.697601834251224,1.07309360559848,0.934122738937356,1.31647879930784,2.13417703302824,0.972825714550269,0.438599962275997,1.09775057645525,0.939444931322602,42.2682796613896,151.06397097279,0,0.793351699990633,6.61193576659225,5.80591679651096,4.76809606891745,3.42861991859682,4.22518283305254,2.28270751335071,1.42358718463353,2.63518327558417,2.26201687920243,3.18330355265841,1.55971269695296,0,0.648414149624083,0.796565093017469,8.53505554288868,7.42615331963237,4.50830942692322,3.66572390121566,3.29719228184964,2.24434623649019,1.13825766823663,0.147610147979602,0,0.246794327843601,0,1.66845105716094,0.196558995113203,0.674586337154561,0.811440485554012,0,0.763877555344259,0,0.648540907100142,0.274561413188081,0,0.744281895337007,0.312037673114561,0.505157755894224,0.179397413521912,0.482443521363367,5.35784251483154,8.7166049414423,4.88894929326078,4.75286240170527,4.69380496577004,4.02015017860358,2.61848004974615,3.31727201358258,5.04432461139811,5.97954662051692,4.30527875375215,3.76885623846197,3.7990696010497,2.89298117163023,0,0,0,0.275936746304732,67.2706972048848,69.3893184625843,11.4754461763673,0.757412781613119,20.1925260426404,17.1793047490521,19.3881057959519,10.7535959078648,12.2539270745317,9.6246020468203,19.4309136803949,20.4579100537918,18.9738133414331,46.591590881162,2.6968616189571,9.25941139069727,5.53815661802159,1.81467135269789,2.65490276679926,6.06951590387454,4.23252979750651,2.45186603682668,2.95301892880773,1.84461088766356,2.58428293168221,1.81766864738753,3.20847640546249,0.948110273807448,2.10837217149998,1.03135543248187,6.46835250932197,9.18311579559682,14.6175312674513,9.00215547132688,8.6896714484714,14.2695054081656,14.6448628335888,11.2652031172402,0.704015124191131,0.21183207086382,3.52845436887939,0.8244312647074,1.77610869365496,2.41251699712623,0.954978752025092,0.328281799490123,0,60.0777978514051,0.170870880797853,4.12773735926445,1.85194527369712,0.376736914009382,0,0,0.679913719975421,0.419854356970974,0.552799895217695,0.954670618015114,11.2299277721303,4.67634774391752,4.53622431451565,4.39085421630384,2.83871332870031,3.10187996685088,2.97552440611209,1.83229159388821,1.29614973291793,0,8.45539408026285,4.63501292736334,3.64008679005615,2.91676782516071,4.26227417476513,3.54807863530634,2.34714477291508,2.47388331203505,0.838874755405687,3.38217769156408,2.88030006257865,0,3.64905387522296,1.33524244314275,0.389762468933385,1.9692936523423,0.596044064343795,0.480781798079875,0.443068581523732,0.403865799792591,0.457240839929999,0.201652370273681,0.194915761479505,0.288635524920988,0.116876902181569,1.58711268530648,1.10992976687032,0.179427713218951,0.503653849092235,1.54551675225752,1.50145980360946,2.56412273974171,0.428736758158132,0,113.51512036603,91.144396828421,83.6427449621519,62.726411555446,62.3425092991284,55.1437545094481,53.3267775183127,55.3895079965791,53.9239466691203,64.7200389689775,6.2272408550506,19.5522187966505,22.1953687480374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| |||
|short_description=p2@Nsg1 | |||
}} |
Revision as of 09:39, 4 August 2015
Short description: | p2@Nsg1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nsg1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 12bp_to_ENSMUST00000031009, NM_010942, uc008xga.1_5end |
EntrezGene: | 18196 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 2.05e-18 | 39 |
electrically active cell | 2.05e-18 | 39 |
neuron | 6.57e-18 | 33 |
neuronal stem cell | 6.57e-18 | 33 |
neuroblast | 6.57e-18 | 33 |
electrically signaling cell | 6.57e-18 | 33 |
CNS neuron (sensu Vertebrata) | 2.92e-16 | 23 |
neuroblast (sensu Vertebrata) | 2.92e-16 | 23 |
neural cell | 3.90e-16 | 43 |
ectodermal cell | 7.61e-16 | 44 |
neurectodermal cell | 7.61e-16 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.43e-33 | 73 |
nervous system | 1.31e-31 | 75 |
neurectoderm | 1.44e-27 | 64 |
neural plate | 1.44e-27 | 64 |
presumptive neural plate | 1.44e-27 | 64 |
regional part of nervous system | 5.20e-27 | 54 |
neural tube | 1.14e-25 | 52 |
neural rod | 1.14e-25 | 52 |
future spinal cord | 1.14e-25 | 52 |
neural keel | 1.14e-25 | 52 |
ectoderm-derived structure | 3.57e-25 | 95 |
ectoderm | 3.57e-25 | 95 |
presumptive ectoderm | 3.57e-25 | 95 |
brain | 6.62e-22 | 47 |
future brain | 6.62e-22 | 47 |
ecto-epithelium | 1.34e-21 | 73 |
regional part of brain | 2.13e-21 | 46 |
gray matter | 1.78e-20 | 34 |
pre-chordal neural plate | 1.63e-19 | 49 |
anterior neural tube | 6.71e-19 | 40 |
structure with developmental contribution from neural crest | 8.41e-19 | 92 |
regional part of forebrain | 2.54e-18 | 39 |
forebrain | 2.54e-18 | 39 |
future forebrain | 2.54e-18 | 39 |
brain grey matter | 6.72e-17 | 29 |
regional part of telencephalon | 6.72e-17 | 29 |
telencephalon | 6.72e-17 | 29 |
cerebral cortex | 1.30e-11 | 21 |
cerebral hemisphere | 1.30e-11 | 21 |
pallium | 1.30e-11 | 21 |
regional part of cerebral cortex | 2.55e-09 | 17 |
posterior neural tube | 2.57e-07 | 12 |
chordal neural plate | 2.57e-07 | 12 |