FFCP PHASE1:Mm9::chr7:19661591..19661622,+: Difference between revisions
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{{FFCP|EntrezGene=13401|HGNC=|MCL_coexpression_id=398|UniProt=Q08274,E9Q6J8|association_with_transcript=0bp_to_ENSMUST00000032570,ENSMUST00000108479_5end|description=CAGE_peak_2_at_Dmwd_5end|id=chr7:19661591..19661622,+|ontology_enrichment_celltype=CL:0000221!2.43e-21!44;CL:0000133!2.43e-21!44;CL:0002319!8.38e-21!43;CL:0000055!4.76e-18!50;CL:0000540!8.08e-16!33;CL:0000047!8.08e-16!33;CL:0000031!8.08e-16!33;CL:0000404!8.08e-16!33;CL:0000117!6.13e-14!23;CL:0000337!6.13e-14!23;CL:0000393!2.08e-13!39;CL:0000211!2.08e-13!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.24e-21,44;CL:0000133,1.24e-21,44;CL:0002319,4.36e-21,43;CL:0000540,4.98e-16,33;CL:0000047,4.98e-16,33;CL:0000031,4.98e-16,33;CL:0000404,4.98e-16,33;CL:0000117,4.03e-14,23;CL:0000337,4.03e-14,23;CL:0000393,1.44e-13,39;CL:0000211,1.44e-13,39;CL:0002321,4.95e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.24e-27!75;UBERON:0001016!1.24e-27!75;UBERON:0001017!5.40e-27!73;UBERON:0005743!5.40e-27!73;UBERON:0004121!4.83e-23!102;UBERON:0000924!4.83e-23!102;UBERON:0006601!4.83e-23!102;UBERON:0002346!5.07e-20!71;UBERON:0003075!5.07e-20!71;UBERON:0007284!5.07e-20!71;UBERON:0001049!1.23e-18!52;UBERON:0005068!1.23e-18!52;UBERON:0006241!1.23e-18!52;UBERON:0007135!1.23e-18!52;UBERON:0002020!1.79e-17!34;UBERON:0000033!4.24e-17!63;UBERON:0002616!5.75e-17!49;UBERON:0000955!6.43e-17!50;UBERON:0006238!6.43e-17!50;UBERON:0003056!4.82e-16!49;UBERON:0002780!6.69e-16!39;UBERON:0001890!6.69e-16!39;UBERON:0006240!6.69e-16!39;UBERON:0003080!2.03e-15!40;UBERON:0002791!4.40e-14!29;UBERON:0003528!4.40e-14!29;UBERON:0001893!4.40e-14!29;UBERON:0000956!2.81e-10!21;UBERON:0001869!2.81e-10!21;UBERON:0000203!2.81e-10!21;UBERON:0000025!3.02e-10!114;UBERON:0004111!7.27e-09!122;UBERON:0002619!3.57e-08!17|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.90e-28,75;UBERON:0001017,3.08e-27,73;UBERON:0004121,7.85e-23,95;UBERON:0000924,7.85e-23,95;UBERON:0006601,7.85e-23,95;UBERON:0010314,3.48e-22,92;UBERON:0000073,1.66e-20,54;UBERON:0002346,2.69e-20,64;UBERON:0003075,2.69e-20,64;UBERON:0007284,2.69e-20,64;UBERON:0001049,9.20e-19,52;UBERON:0005068,9.20e-19,52;UBERON:0006241,9.20e-19,52;UBERON:0007135,9.20e-19,52;UBERON:0002020,1.04e-17,34;UBERON:0010371,5.53e-17,73;UBERON:0003056,4.89e-16,49;UBERON:0002780,5.53e-16,39;UBERON:0001890,5.53e-16,39;UBERON:0006240,5.53e-16,39;UBERON:0002616,7.87e-16,46;UBERON:0000955,8.80e-16,47;UBERON:0006238,8.80e-16,47;UBERON:0003080,1.70e-15,40;UBERON:0003528,2.88e-14,29;UBERON:0002791,2.88e-14,29;UBERON:0001893,2.88e-14,29;UBERON:0000956,2.09e-10,21;UBERON:0001869,2.09e-10,21;UBERON:0000203,2.09e-10,21;UBERON:0000025,8.55e-10,114;UBERON:0004111,2.52e-08,122;UBERON:0002619,2.86e-08,17|phase1_expression=9.76907967339243,0,0,0.30246421130683,0,0,0,0.129123323441576,0.140788722151667,0.234064526321993,0,0,0,0.0874204024189974,1.66554880907831,1.21485160433896,0.699561878128147,0.315462165358238,0.274228867211478,0.42438965179803,4.84746753861098,0.198581902401771,0.522399578277871,0,0.45881856213434,0,0.430761996159075,0,0,0.252030129759931,0,1.90509202037889,4.30545351309199,0,0,0.332469290716985,0.204169356262369,1.67412652294763,0.7813353445238,1.0470474879476,0.588231488031014,0.683045484958446,0.485510353031154,0.377690453926732,1.62203089951223,2.56965453026354,18.7773922643529,9.81113203712009,17.1355222532888,7.58276606389705,4.75953833526233,18.6878333674463,0.167782606057736,0,0,3.8588915405392,4.01146815914259,5.15672092277442,16.9945827122062,14.2827564403449,13.9442908771359,13.5537812827653,9.78224275722253,0.899899717281399,0,2.1314403448383,14.6804054154018,22.6688800139717,15.1386833970377,12.0155285115205,12.8298226424343,19.9955689082663,15.2399293256613,11.3916443269907,10.8305382250607,13.7882817991503,8.8092704799511,8.2996769755372,5.83704826373725,11.8697658957174,13.7231465403614,15.6274011167028,5.30447698102624,10.6924895906019,11.0014738399303,18.8562294703147,15.3761415263031,15.6575534493252,5.75519069332199,6.42358260907677,3.47837386442013,3.44169550792555,1.3599426674155,0.539703191637817,0,0.896053774194671,1.12355536105401,1.87473354835864,1.03914401841148,3.88673531961374,9.15482228548423,3.84979432242953,0,0,1.08245520505607,0.760079596425296,2.02209778005913,0.91347103775248,0,3.11728492036132,6.24547176358089,2.74018930480927,4.84292544237723,4.22023393547343,3.88042733547826,3.89566433121994,2.71914464507811,0.86759614151947,0.884610551949874,5.50007289821191,2.42925670306433,0.969750506270444,1.86391761218122,2.34224637609238,6.0739544975902,0.510914110417183,1.31796636956512,0.599902730993408,1.39777249780371,2.39665023047716,5.94750783664214,16.2094114225595,7.30062144807561,7.41574826257959,3.74018480207208,7.46309810111685,7.23059483337246,1.49288364732112,1.26361379216837,0.631325567659422,6.24578126220978,6.66716102857071,5.76198815377118,6.93242162044289,7.75616090325138,5.89323113310309,7.12133106653939,1.03481348295606,7.11374376678379,5.29497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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:13401 | |||
|HGNC= | |||
|MCL_coexpression_id=398 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q08274,uniprot:E9Q6J8 | |||
|association_with_transcript=0bp_to_ENSMUST00000032570,ENSMUST00000108479_5end | |||
|cluster_id=chr7:19661591..19661622,+ | |||
|description=CAGE_peak_2_at_Dmwd_5end | |||
|id=chr7:19661591..19661622,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.43e-21!44;CL:0000133!2.43e-21!44;CL:0002319!8.38e-21!43;CL:0000055!4.76e-18!50;CL:0000540!8.08e-16!33;CL:0000047!8.08e-16!33;CL:0000031!8.08e-16!33;CL:0000404!8.08e-16!33;CL:0000117!6.13e-14!23;CL:0000337!6.13e-14!23;CL:0000393!2.08e-13!39;CL:0000211!2.08e-13!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.24e-21,44;CL:0000133,1.24e-21,44;CL:0002319,4.36e-21,43;CL:0000540,4.98e-16,33;CL:0000047,4.98e-16,33;CL:0000031,4.98e-16,33;CL:0000404,4.98e-16,33;CL:0000117,4.03e-14,23;CL:0000337,4.03e-14,23;CL:0000393,1.44e-13,39;CL:0000211,1.44e-13,39;CL:0002321,4.95e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.24e-27!75;UBERON:0001016!1.24e-27!75;UBERON:0001017!5.40e-27!73;UBERON:0005743!5.40e-27!73;UBERON:0004121!4.83e-23!102;UBERON:0000924!4.83e-23!102;UBERON:0006601!4.83e-23!102;UBERON:0002346!5.07e-20!71;UBERON:0003075!5.07e-20!71;UBERON:0007284!5.07e-20!71;UBERON:0001049!1.23e-18!52;UBERON:0005068!1.23e-18!52;UBERON:0006241!1.23e-18!52;UBERON:0007135!1.23e-18!52;UBERON:0002020!1.79e-17!34;UBERON:0000033!4.24e-17!63;UBERON:0002616!5.75e-17!49;UBERON:0000955!6.43e-17!50;UBERON:0006238!6.43e-17!50;UBERON:0003056!4.82e-16!49;UBERON:0002780!6.69e-16!39;UBERON:0001890!6.69e-16!39;UBERON:0006240!6.69e-16!39;UBERON:0003080!2.03e-15!40;UBERON:0002791!4.40e-14!29;UBERON:0003528!4.40e-14!29;UBERON:0001893!4.40e-14!29;UBERON:0000956!2.81e-10!21;UBERON:0001869!2.81e-10!21;UBERON:0000203!2.81e-10!21;UBERON:0000025!3.02e-10!114;UBERON:0004111!7.27e-09!122;UBERON:0002619!3.57e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.90e-28,75;UBERON:0001017,3.08e-27,73;UBERON:0004121,7.85e-23,95;UBERON:0000924,7.85e-23,95;UBERON:0006601,7.85e-23,95;UBERON:0010314,3.48e-22,92;UBERON:0000073,1.66e-20,54;UBERON:0002346,2.69e-20,64;UBERON:0003075,2.69e-20,64;UBERON:0007284,2.69e-20,64;UBERON:0001049,9.20e-19,52;UBERON:0005068,9.20e-19,52;UBERON:0006241,9.20e-19,52;UBERON:0007135,9.20e-19,52;UBERON:0002020,1.04e-17,34;UBERON:0010371,5.53e-17,73;UBERON:0003056,4.89e-16,49;UBERON:0002780,5.53e-16,39;UBERON:0001890,5.53e-16,39;UBERON:0006240,5.53e-16,39;UBERON:0002616,7.87e-16,46;UBERON:0000955,8.80e-16,47;UBERON:0006238,8.80e-16,47;UBERON:0003080,1.70e-15,40;UBERON:0003528,2.88e-14,29;UBERON:0002791,2.88e-14,29;UBERON:0001893,2.88e-14,29;UBERON:0000956,2.09e-10,21;UBERON:0001869,2.09e-10,21;UBERON:0000203,2.09e-10,21;UBERON:0000025,8.55e-10,114;UBERON:0004111,2.52e-08,122;UBERON:0002619,2.86e-08,17 | |||
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| |||
|short_description=p2@Dmwd | |||
}} |
Revision as of 17:25, 4 August 2015
Short description: | p2@Dmwd |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Dmwd_5end |
Coexpression cluster: | MCL_coexpression_mm9:398 |
Association with transcript: | 0bp_to_ENSMUST00000032570, ENSMUST00000108479_5end |
EntrezGene: | 13401 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.24e-21 | 44 |
neurectodermal cell | 1.24e-21 | 44 |
neural cell | 4.36e-21 | 43 |
neuron | 4.98e-16 | 33 |
neuronal stem cell | 4.98e-16 | 33 |
neuroblast | 4.98e-16 | 33 |
electrically signaling cell | 4.98e-16 | 33 |
CNS neuron (sensu Vertebrata) | 4.03e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.03e-14 | 23 |
electrically responsive cell | 1.44e-13 | 39 |
electrically active cell | 1.44e-13 | 39 |
embryonic cell | 4.95e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.90e-28 | 75 |
central nervous system | 3.08e-27 | 73 |
ectoderm-derived structure | 7.85e-23 | 95 |
ectoderm | 7.85e-23 | 95 |
presumptive ectoderm | 7.85e-23 | 95 |
structure with developmental contribution from neural crest | 3.48e-22 | 92 |
regional part of nervous system | 1.66e-20 | 54 |
neurectoderm | 2.69e-20 | 64 |
neural plate | 2.69e-20 | 64 |
presumptive neural plate | 2.69e-20 | 64 |
neural tube | 9.20e-19 | 52 |
neural rod | 9.20e-19 | 52 |
future spinal cord | 9.20e-19 | 52 |
neural keel | 9.20e-19 | 52 |
gray matter | 1.04e-17 | 34 |
ecto-epithelium | 5.53e-17 | 73 |
pre-chordal neural plate | 4.89e-16 | 49 |
regional part of forebrain | 5.53e-16 | 39 |
forebrain | 5.53e-16 | 39 |
future forebrain | 5.53e-16 | 39 |
regional part of brain | 7.87e-16 | 46 |
brain | 8.80e-16 | 47 |
future brain | 8.80e-16 | 47 |
anterior neural tube | 1.70e-15 | 40 |
brain grey matter | 2.88e-14 | 29 |
regional part of telencephalon | 2.88e-14 | 29 |
telencephalon | 2.88e-14 | 29 |
cerebral cortex | 2.09e-10 | 21 |
cerebral hemisphere | 2.09e-10 | 21 |
pallium | 2.09e-10 | 21 |
tube | 8.55e-10 | 114 |
anatomical conduit | 2.52e-08 | 122 |
regional part of cerebral cortex | 2.86e-08 | 17 |