FFCP PHASE1:Mm9::chr2:180332924..180332931,+: Difference between revisions
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{{FFCP|EntrezGene=12841|HGNC=|MCL_coexpression_id=1050|UniProt=A2ACT7,E9PW00,Q8BSX1|association_with_transcript=0bp_to_ENSMUST00000103059,ENSMUST00000171895,NM_009936,uc008ojl.1_5end|description=CAGE_peak_2_at_Col9a3_5end|id=chr2:180332924..180332931,+|ontology_enrichment_celltype=CL:0000221!2.25e-10!44;CL:0000133!2.25e-10!44;CL:0002319!9.53e-10!43;CL:0000540!9.31e-08!33;CL:0000047!9.31e-08!33;CL:0000031!9.31e-08!33;CL:0000404!9.31e-08!33|ontology_enrichment_celltype_v019_2=CL:0000221,2.34e-09,44;CL:0000133,2.34e-09,44;CL:0002319,1.37e-08,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.52e-17!73;UBERON:0005743!1.52e-17!73;UBERON:0000073!2.84e-17!75;UBERON:0001016!2.84e-17!75;UBERON:0004121!1.32e-16!102;UBERON:0000924!1.32e-16!102;UBERON:0006601!1.32e-16!102;UBERON:0002346!3.99e-14!71;UBERON:0003075!3.99e-14!71;UBERON:0007284!3.99e-14!71;UBERON:0001049!3.72e-13!52;UBERON:0005068!3.72e-13!52;UBERON:0006241!3.72e-13!52;UBERON:0007135!3.72e-13!52;UBERON:0000033!1.56e-11!63;UBERON:0003056!1.64e-11!49;UBERON:0002020!7.56e-11!34;UBERON:0003080!3.38e-10!40;UBERON:0000955!5.77e-10!50;UBERON:0006238!5.77e-10!50;UBERON:0002616!6.95e-10!49;UBERON:0002780!7.22e-10!39;UBERON:0001890!7.22e-10!39;UBERON:0006240!7.22e-10!39;UBERON:0002791!3.69e-08!29;UBERON:0003528!3.69e-08!29;UBERON:0001893!3.69e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.97e-14,73;UBERON:0002346,1.50e-13,64;UBERON:0003075,1.50e-13,64;UBERON:0007284,1.50e-13,64;UBERON:0001016,3.25e-13,75;UBERON:0004121,1.31e-12,95;UBERON:0000924,1.31e-12,95;UBERON:0006601,1.31e-12,95;UBERON:0010371,1.63e-12,73;UBERON:0001049,3.71e-12,52;UBERON:0005068,3.71e-12,52;UBERON:0006241,3.71e-12,52;UBERON:0007135,3.71e-12,52;UBERON:0000073,1.39e-10,54;UBERON:0002020,1.61e-10,34;UBERON:0003056,3.43e-10,49;UBERON:0003080,1.29e-08,40;UBERON:0002616,1.56e-08,46;UBERON:0010314,1.69e-08,92;UBERON:0000026,2.50e-08,12;UBERON:0004708,2.50e-08,12;UBERON:0002101,2.50e-08,12;UBERON:0004357,2.50e-08,12;UBERON:0004347,2.50e-08,12;UBERON:0005732,2.50e-08,12;UBERON:0005733,2.50e-08,12;UBERON:0002780,3.40e-08,39;UBERON:0001890,3.40e-08,39;UBERON:0006240,3.40e-08,39;UBERON:0000955,3.49e-08,47;UBERON:0006238,3.49e-08,47;UBERON:0010707,1.91e-07,13;UBERON:0003528,4.41e-07,29;UBERON:0002791,4.41e-07,29;UBERON:0001893,4.41e-07,29|phase1_expression=37.314681375417,0,0,0,0,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,3.73466510648602,2.91644848611425,1.25987779462826,8.62515386189829,0,0,0,0,0,0,1.41621522601718,1.05798195854407,0,0,0.889294796111139,0,0,0,1.19840044207362,3.45796474789399,1.03689612308478,1.4850653216486,1.26194976810829,7.14127461009509,6.40518768759679,1.5923803897944,1.0543001812006,0,0,0.766124028511126,0.768032666281217,1.18697658957174,1.64677758484337,1.04182674111352,0.837548997004143,1.68828783009504,0.763991238884051,4.12480019663135,3.41692033917847,2.23679334990361,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,38.0277233397037,0,0,0,0,0,0,0,0,0,1.04091196059682,0.304465478312141,0.230615497256059,0.452167921657868,0.23517741427141,0,0,0,0.884610551949874,18.7649545938995,4.41683036920787,4.363877278217,0,0.292780797011547,1.04723353406728,0,0,0,0,1.49790639404823,0.915001205637253,4.02093926761166,0.695297280769106,1.27857728665165,1.45451631191692,2.43361894601636,0.101839363850316,3.23458123586242,0,0,0.390361328888111,0,0.540186389416048,3.16480117455002,6.5995404176788,4.99643509110914,3.37326208415024,2.58703370739016,0.862271971731369,4.16033376369202,5.10258260075452,11.3981780862339,8.34141747676794,4.87553033131033,8.43706759272568,3.78165106955137,0,0,0,0.828503090142008,1.87620847984877,0.180062061461015,0.946978942340841,0.983821158737019,0.154267112887378,0,0.268273401399619,0,0,0.164167464079095,0.0810688095458557,0,0,0,0.630869845692382,3.2929475961371,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0,0,0,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.387904974335251,0.140271639780637,0,0,0,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0,0,0.372140947668503,0,0,0,0,0,1.70542270593436,1.14075483509418,2.03694102930226,1.40814148973101,0.670025029767263,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.491764273019036,0.827810238914197,0.321101179975584,1.05490517932983,0,1.26235463602186,0.94652465824877,0.780877488593277,1.72338718186239,1.43381278771531,0.668396022247182,1.13230612315533,3.64329631507405,0.584511715822624,0.790575555893047,0.642642632843614,0,0.534196811001766,0.488660878060728,0.164970122972535,0,1.69946445308487,3.62788268357701,1.50884063804718,1.77181135728464,2.15204603560749,0.775284879504663,2.54473610634254,1.42598951353889,0.316036757935816,0,0,0,2.34079422240703,0.905510786479282,1.07168517515796,1.59606210278046,0.891844088010353,1.81003922662333,0.304464949114599,0,0,0,0.32977250588296,0,0.361877549568935,0.238744688006273,0.328281799490123,0.291480836629851,1.11255181206306,0,0.206386867963223,0,0,0,0,0,0,0,0,0.474503990371703,0.609958401380546,0.324016022465404,0.418176592028937,0.436725127492355,0,0.165306911450672,0.26175594198403,0,0,0,10.7651913151665,8.93475848468327,3.50012139019286,3.48731523389874,1.85851738039856,0.469428954583016,0.13020438484395,0.524296722128554,0.241584120826006,2.01621004380506,0,0,0.718976700153791,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,4.14292712856459,6.30185064783336,2.40594455281163,2.74033007908257,0,1.35004500046361,0.900642406448441,0.906284817968409,1.55328093525546,0.103787347584177,2.79317411380722,5.80494259564056,4.61902762429759,2.09613162627982,0.919217542250071,0.222246727801615,1.03017528619447,0.64183841918363,1.51618327058278,1.01391719956096,1.32038438970253,0.561849044819294,0.384150914429216,0.459483751644906,0,0.579421629724277,0.578727661391115,0.824171801606613,0.883193520806384,1.37147700954166,0.887379030796687,0.238436189947321,0.581385666529314,0.564656282491984,0.930760686808441,0.73171189149109,0.263069711437843,0.679020569229309,0,0.474540072496697,0.788035859004508,1.22769312950907,0.929621047115796,5.20847849649082,2.74791635731741,2.57324769289949,1.93383948643468,7.84282161482258,11.4707537942148,5.79669589051054|short_description=p2@Col9a3}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:12841 | |||
|HGNC= | |||
|MCL_coexpression_id=1050 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2ACT7,uniprot:E9PW00,uniprot:Q8BSX1 | |||
|association_with_transcript=0bp_to_ENSMUST00000103059,ENSMUST00000171895,NM_009936,uc008ojl.1_5end | |||
|cluster_id=chr2:180332924..180332931,+ | |||
|description=CAGE_peak_2_at_Col9a3_5end | |||
|id=chr2:180332924..180332931,+ | |||
|ontology_enrichment_celltype=CL:0000221!2.25e-10!44;CL:0000133!2.25e-10!44;CL:0002319!9.53e-10!43;CL:0000540!9.31e-08!33;CL:0000047!9.31e-08!33;CL:0000031!9.31e-08!33;CL:0000404!9.31e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.34e-09,44;CL:0000133,2.34e-09,44;CL:0002319,1.37e-08,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.52e-17!73;UBERON:0005743!1.52e-17!73;UBERON:0000073!2.84e-17!75;UBERON:0001016!2.84e-17!75;UBERON:0004121!1.32e-16!102;UBERON:0000924!1.32e-16!102;UBERON:0006601!1.32e-16!102;UBERON:0002346!3.99e-14!71;UBERON:0003075!3.99e-14!71;UBERON:0007284!3.99e-14!71;UBERON:0001049!3.72e-13!52;UBERON:0005068!3.72e-13!52;UBERON:0006241!3.72e-13!52;UBERON:0007135!3.72e-13!52;UBERON:0000033!1.56e-11!63;UBERON:0003056!1.64e-11!49;UBERON:0002020!7.56e-11!34;UBERON:0003080!3.38e-10!40;UBERON:0000955!5.77e-10!50;UBERON:0006238!5.77e-10!50;UBERON:0002616!6.95e-10!49;UBERON:0002780!7.22e-10!39;UBERON:0001890!7.22e-10!39;UBERON:0006240!7.22e-10!39;UBERON:0002791!3.69e-08!29;UBERON:0003528!3.69e-08!29;UBERON:0001893!3.69e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.97e-14,73;UBERON:0002346,1.50e-13,64;UBERON:0003075,1.50e-13,64;UBERON:0007284,1.50e-13,64;UBERON:0001016,3.25e-13,75;UBERON:0004121,1.31e-12,95;UBERON:0000924,1.31e-12,95;UBERON:0006601,1.31e-12,95;UBERON:0010371,1.63e-12,73;UBERON:0001049,3.71e-12,52;UBERON:0005068,3.71e-12,52;UBERON:0006241,3.71e-12,52;UBERON:0007135,3.71e-12,52;UBERON:0000073,1.39e-10,54;UBERON:0002020,1.61e-10,34;UBERON:0003056,3.43e-10,49;UBERON:0003080,1.29e-08,40;UBERON:0002616,1.56e-08,46;UBERON:0010314,1.69e-08,92;UBERON:0000026,2.50e-08,12;UBERON:0004708,2.50e-08,12;UBERON:0002101,2.50e-08,12;UBERON:0004357,2.50e-08,12;UBERON:0004347,2.50e-08,12;UBERON:0005732,2.50e-08,12;UBERON:0005733,2.50e-08,12;UBERON:0002780,3.40e-08,39;UBERON:0001890,3.40e-08,39;UBERON:0006240,3.40e-08,39;UBERON:0000955,3.49e-08,47;UBERON:0006238,3.49e-08,47;UBERON:0010707,1.91e-07,13;UBERON:0003528,4.41e-07,29;UBERON:0002791,4.41e-07,29;UBERON:0001893,4.41e-07,29 | |||
|phase1_expression=37.314681375417,0,0,0,0,0.503637815735669,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52617609466313,3.73466510648602,2.91644848611425,1.25987779462826,8.62515386189829,0,0,0,0,0,0,1.41621522601718,1.05798195854407,0,0,0.889294796111139,0,0,0,1.19840044207362,3.45796474789399,1.03689612308478,1.4850653216486,1.26194976810829,7.14127461009509,6.40518768759679,1.5923803897944,1.0543001812006,0,0,0.766124028511126,0.768032666281217,1.18697658957174,1.64677758484337,1.04182674111352,0.837548997004143,1.68828783009504,0.763991238884051,4.12480019663135,3.41692033917847,2.23679334990361,0.227178579999552,0.226714680320357,0,0,0,0,0,0,0.140444420131752,0,0,0,38.0277233397037,0,0,0,0,0,0,0,0,0,1.04091196059682,0.304465478312141,0.230615497256059,0.452167921657868,0.23517741427141,0,0,0,0.884610551949874,18.7649545938995,4.41683036920787,4.363877278217,0,0.292780797011547,1.04723353406728,0,0,0,0,1.49790639404823,0.915001205637253,4.02093926761166,0.695297280769106,1.27857728665165,1.45451631191692,2.43361894601636,0.101839363850316,3.23458123586242,0,0,0.390361328888111,0,0.540186389416048,3.16480117455002,6.5995404176788,4.99643509110914,3.37326208415024,2.58703370739016,0.862271971731369,4.16033376369202,5.10258260075452,11.3981780862339,8.34141747676794,4.87553033131033,8.43706759272568,3.78165106955137,0,0,0,0.828503090142008,1.87620847984877,0.180062061461015,0.946978942340841,0.983821158737019,0.154267112887378,0,0.268273401399619,0,0,0.164167464079095,0.0810688095458557,0,0,0,0.630869845692382,3.2929475961371,0,0,0.213288250535234,0.232236671860439,0.38660238396628,0,0,0,0,0.164698954724011,0,0.397912944082302,0.19496408711912,0,0,0,0,0.342745537829186,0,0.203651327845314,0.387904974335251,0.140271639780637,0,0,0,0,0,0,0.196558995113203,0,0,0,0.25462585178142,0,0,0,0,0.372140947668503,0,0,0,0,0,1.70542270593436,1.14075483509418,2.03694102930226,1.40814148973101,0.670025029767263,0.238043640886014,0,0.157635144106191,0,0.159454768657487,0,0,0,0,0,0.491764273019036,0.827810238914197,0.321101179975584,1.05490517932983,0,1.26235463602186,0.94652465824877,0.780877488593277,1.72338718186239,1.43381278771531,0.668396022247182,1.13230612315533,3.64329631507405,0.584511715822624,0.790575555893047,0.642642632843614,0,0.534196811001766,0.488660878060728,0.164970122972535,0,1.69946445308487,3.62788268357701,1.50884063804718,1.77181135728464,2.15204603560749,0.775284879504663,2.54473610634254,1.42598951353889,0.316036757935816,0,0,0,2.34079422240703,0.905510786479282,1.07168517515796,1.59606210278046,0.891844088010353,1.81003922662333,0.304464949114599,0,0,0,0.32977250588296,0,0.361877549568935,0.238744688006273,0.328281799490123,0.291480836629851,1.11255181206306,0,0.206386867963223,0,0,0,0,0,0,0,0,0.474503990371703,0.609958401380546,0.324016022465404,0.418176592028937,0.436725127492355,0,0.165306911450672,0.26175594198403,0,0,0,10.7651913151665,8.93475848468327,3.50012139019286,3.48731523389874,1.85851738039856,0.469428954583016,0.13020438484395,0.524296722128554,0.241584120826006,2.01621004380506,0,0,0.718976700153791,0.129920822977795,0.179026695667481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.82375921308533,4.14292712856459,6.30185064783336,2.40594455281163,2.74033007908257,0,1.35004500046361,0.900642406448441,0.906284817968409,1.55328093525546,0.103787347584177,2.79317411380722,5.80494259564056,4.61902762429759,2.09613162627982,0.919217542250071,0.222246727801615,1.03017528619447,0.64183841918363,1.51618327058278,1.01391719956096,1.32038438970253,0.561849044819294,0.384150914429216,0.459483751644906,0,0.579421629724277,0.578727661391115,0.824171801606613,0.883193520806384,1.37147700954166,0.887379030796687,0.238436189947321,0.581385666529314,0.564656282491984,0.930760686808441,0.73171189149109,0.263069711437843,0.679020569229309,0,0.474540072496697,0.788035859004508,1.22769312950907,0.929621047115796,5.20847849649082,2.74791635731741,2.57324769289949,1.93383948643468,7.84282161482258,11.4707537942148,5.79669589051054 | |||
|short_description=p2@Col9a3 | |||
}} |
Revision as of 17:34, 4 August 2015
Short description: | p2@Col9a3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Col9a3_5end |
Coexpression cluster: | MCL_coexpression_mm9:1050 |
Association with transcript: | 0bp_to_ENSMUST00000103059, ENSMUST00000171895, NM_009936, uc008ojl.1_5end |
EntrezGene: | 12841 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.34e-09 | 44 |
neurectodermal cell | 2.34e-09 | 44 |
neural cell | 1.37e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.97e-14 | 73 |
neurectoderm | 1.50e-13 | 64 |
neural plate | 1.50e-13 | 64 |
presumptive neural plate | 1.50e-13 | 64 |
nervous system | 3.25e-13 | 75 |
ectoderm-derived structure | 1.31e-12 | 95 |
ectoderm | 1.31e-12 | 95 |
presumptive ectoderm | 1.31e-12 | 95 |
ecto-epithelium | 1.63e-12 | 73 |
neural tube | 3.71e-12 | 52 |
neural rod | 3.71e-12 | 52 |
future spinal cord | 3.71e-12 | 52 |
neural keel | 3.71e-12 | 52 |
regional part of nervous system | 1.39e-10 | 54 |
gray matter | 1.61e-10 | 34 |
pre-chordal neural plate | 3.43e-10 | 49 |
anterior neural tube | 1.29e-08 | 40 |
regional part of brain | 1.56e-08 | 46 |
structure with developmental contribution from neural crest | 1.69e-08 | 92 |
appendage | 2.50e-08 | 12 |
paired limb/fin | 2.50e-08 | 12 |
limb | 2.50e-08 | 12 |
paired limb/fin bud | 2.50e-08 | 12 |
limb bud | 2.50e-08 | 12 |
limb/fin field | 2.50e-08 | 12 |
limb field | 2.50e-08 | 12 |
regional part of forebrain | 3.40e-08 | 39 |
forebrain | 3.40e-08 | 39 |
future forebrain | 3.40e-08 | 39 |
brain | 3.49e-08 | 47 |
future brain | 3.49e-08 | 47 |
appendage girdle complex | 1.91e-07 | 13 |
brain grey matter | 4.41e-07 | 29 |
regional part of telencephalon | 4.41e-07 | 29 |
telencephalon | 4.41e-07 | 29 |