FFCP PHASE1:Mm9::chr5:93522524..93522575,+: Difference between revisions
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{{FFCP|EntrezGene=52398|HGNC=|MCL_coexpression_id=2|UniProt=Q8C1B7|association_with_transcript=41bp_to_ENSMUST00000074733,NM_001009818,uc008ydx.1,uc008ydy.1,uc008ydz.1,uc008yea.1_5end|description=CAGE_peak_2_at_Sept11_5end|id=chr5:93522524..93522575,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!9.11e-10!49;UBERON:0000033!3.57e-09!63;UBERON:0003080!5.78e-09!40;UBERON:0002780!7.26e-09!39;UBERON:0001890!7.26e-09!39;UBERON:0006240!7.26e-09!39;UBERON:0002020!1.38e-08!34;UBERON:0002791!1.60e-08!29;UBERON:0003528!1.60e-08!29;UBERON:0001893!1.60e-08!29;UBERON:0000955!1.98e-08!50;UBERON:0006238!1.98e-08!50;UBERON:0002346!2.42e-08!71;UBERON:0003075!2.42e-08!71;UBERON:0007284!2.42e-08!71;UBERON:0001049!3.13e-08!52;UBERON:0005068!3.13e-08!52;UBERON:0006241!3.13e-08!52;UBERON:0007135!3.13e-08!52;UBERON:0002021!3.82e-08!10;UBERON:0000411!3.82e-08!10;UBERON:0001950!3.82e-08!10;UBERON:0002616!5.85e-08!49;UBERON:0000956!1.13e-07!21;UBERON:0001869!1.13e-07!21;UBERON:0000203!1.13e-07!21;UBERON:0002619!1.29e-07!17;UBERON:0004121!2.26e-07!102;UBERON:0000924!2.26e-07!102;UBERON:0006601!2.26e-07!102;UBERON:0000468!2.33e-07!333;UBERON:0000073!2.83e-07!75;UBERON:0001016!2.83e-07!75;UBERON:0001017!8.48e-07!73;UBERON:0005743!8.48e-07!73|ontology_enrichment_uberon_v019_2=UBERON:0003056,9.08e-10,49;UBERON:0010371,2.87e-09,73;UBERON:0003080,5.76e-09,40;UBERON:0002346,6.94e-09,64;UBERON:0003075,6.94e-09,64;UBERON:0007284,6.94e-09,64;UBERON:0002780,7.25e-09,39;UBERON:0001890,7.25e-09,39;UBERON:0006240,7.25e-09,39;UBERON:0010314,9.32e-09,92;UBERON:0002020,1.38e-08,34;UBERON:0000955,1.41e-08,47;UBERON:0006238,1.41e-08,47;UBERON:0003528,1.59e-08,29;UBERON:0002791,1.59e-08,29;UBERON:0001893,1.59e-08,29;UBERON:0000073,2.96e-08,54;UBERON:0001049,3.13e-08,52;UBERON:0005068,3.13e-08,52;UBERON:0006241,3.13e-08,52;UBERON:0007135,3.13e-08,52;UBERON:0002021,3.81e-08,10;UBERON:0000411,3.81e-08,10;UBERON:0001950,3.81e-08,10;UBERON:0002616,4.27e-08,46;UBERON:0000956,1.12e-07,21;UBERON:0001869,1.12e-07,21;UBERON:0000203,1.12e-07,21;UBERON:0004121,1.26e-07,95;UBERON:0000924,1.26e-07,95;UBERON:0006601,1.26e-07,95;UBERON:0002619,1.29e-07,17;UBERON:0001016,2.82e-07,75;UBERON:0001017,8.46e-07,73|phase1_expression=27.0651551607102,0.697950815278722,0,0.90739263392049,1.00179145989269,2.18243053485457,1.63528848416868,1.16210991097419,13.093351160105,14.0438715793196,16.265706981423,8.61539317149633,2.05440875917447,0.524522414513984,0.666219523631325,2.02475267389826,0.699561878128147,3.15462165358238,4.11343300817216,2.12194825899015,10.5453679787327,5.36171136484781,4.96279599363977,2.07990149631429,2.06468352960453,0.57423196411502,1.29228598847722,1.07735616342945,2.66032787238923,2.52030129759931,2.88249663851896,3.81018404075779,2.46025915033828,0,4.04392267651784,3.82339684324532,2.6542016314108,0.418531630736908,0.7813353445238,1.0470474879476,0,0,0,39.5316008443313,36.2929413765862,42.5828465015101,10.9534788208725,5.66865406589161,5.93152693383074,8.94377535741704,12.8787507895334,8.62515386189829,3.6912173332702,3.62681071005672,1.00828139742739,24.182386987379,22.9226751951005,20.1112115988203,13.3528864167335,13.2247744818008,16.4796164911607,9.14880236586657,7.11435836888911,0.899899717281399,1.97773272513395,0,2.09720077362883,3.84218305321555,10.4726508431562,11.8805225731888,10.9368979902719,10.2834354385369,9.27647871996777,10.779190330916,14.6643570657902,15.6267193723704,6.60695285996332,14.6840438797966,10.752457327937,16.2220133908138,17.199676997253,15.6274011167028,6.97957497503452,11.8180148106653,11.1542720877071,11.490514833473,16.5151149726959,16.0303523409758,18.0228340132978,13.9051670596485,13.3337664802772,1.72084775396277,2.719885334831,0,0,0.448026887097336,4.49422144421606,32.0409006446749,17.1458763037893,12.3668851078619,15.0702459161048,16.6824420638613,17.8363667794652,0,4.11332977921307,4.30711771307668,2.02209778005913,2.05530983494308,6.47344709117929,4.30482203287992,11.2765462397988,12.4830846107978,10.6083128737787,9.64624899536784,15.521709341913,4.39833069653864,7.41584903203122,5.49477556295664,6.19227386364912,22.8091258425847,7.06692859073259,8.727754556434,7.45567044872489,9.36898550436951,11.51956887474,3.0654846625031,2.87556298814209,2.39961092397363,4.70159840170339,13.0317856282196,48.0375632959558,12.8167439155122,67.0961875942187,66.4860189058859,13.5062228963714,27.418773458451,29.8389336081427,5.97153458928446,2.27450482590307,5.89237196482127,17.6963802429277,11.0353010128067,18.546399369951,16.1254155084215,13.4031903328116,12.1708034270607,11.1505052226077,13.1938719076898,12.9340795759705,17.3977593754394,18.8267702855425,15.7820927347854,20.019401944243,21.2433821578522,16.2567887762275,19.1072896145753,4.21327912387941,1.80143534980301,3.6941254921427,9.52778553663309,10.5536726991493,10.4435995647389,11.3637473080901,13.7734962223183,11.2614992407786,10.4640275137684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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:52398 | |||
|HGNC= | |||
|MCL_coexpression_id=2 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8C1B7 | |||
|association_with_transcript=41bp_to_ENSMUST00000074733,NM_001009818,uc008ydx.1,uc008ydy.1,uc008ydz.1,uc008yea.1_5end | |||
|cluster_id=chr5:93522524..93522575,+ | |||
|description=CAGE_peak_2_at_Sept11_5end | |||
|id=chr5:93522524..93522575,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!9.11e-10!49;UBERON:0000033!3.57e-09!63;UBERON:0003080!5.78e-09!40;UBERON:0002780!7.26e-09!39;UBERON:0001890!7.26e-09!39;UBERON:0006240!7.26e-09!39;UBERON:0002020!1.38e-08!34;UBERON:0002791!1.60e-08!29;UBERON:0003528!1.60e-08!29;UBERON:0001893!1.60e-08!29;UBERON:0000955!1.98e-08!50;UBERON:0006238!1.98e-08!50;UBERON:0002346!2.42e-08!71;UBERON:0003075!2.42e-08!71;UBERON:0007284!2.42e-08!71;UBERON:0001049!3.13e-08!52;UBERON:0005068!3.13e-08!52;UBERON:0006241!3.13e-08!52;UBERON:0007135!3.13e-08!52;UBERON:0002021!3.82e-08!10;UBERON:0000411!3.82e-08!10;UBERON:0001950!3.82e-08!10;UBERON:0002616!5.85e-08!49;UBERON:0000956!1.13e-07!21;UBERON:0001869!1.13e-07!21;UBERON:0000203!1.13e-07!21;UBERON:0002619!1.29e-07!17;UBERON:0004121!2.26e-07!102;UBERON:0000924!2.26e-07!102;UBERON:0006601!2.26e-07!102;UBERON:0000468!2.33e-07!333;UBERON:0000073!2.83e-07!75;UBERON:0001016!2.83e-07!75;UBERON:0001017!8.48e-07!73;UBERON:0005743!8.48e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,9.08e-10,49;UBERON:0010371,2.87e-09,73;UBERON:0003080,5.76e-09,40;UBERON:0002346,6.94e-09,64;UBERON:0003075,6.94e-09,64;UBERON:0007284,6.94e-09,64;UBERON:0002780,7.25e-09,39;UBERON:0001890,7.25e-09,39;UBERON:0006240,7.25e-09,39;UBERON:0010314,9.32e-09,92;UBERON:0002020,1.38e-08,34;UBERON:0000955,1.41e-08,47;UBERON:0006238,1.41e-08,47;UBERON:0003528,1.59e-08,29;UBERON:0002791,1.59e-08,29;UBERON:0001893,1.59e-08,29;UBERON:0000073,2.96e-08,54;UBERON:0001049,3.13e-08,52;UBERON:0005068,3.13e-08,52;UBERON:0006241,3.13e-08,52;UBERON:0007135,3.13e-08,52;UBERON:0002021,3.81e-08,10;UBERON:0000411,3.81e-08,10;UBERON:0001950,3.81e-08,10;UBERON:0002616,4.27e-08,46;UBERON:0000956,1.12e-07,21;UBERON:0001869,1.12e-07,21;UBERON:0000203,1.12e-07,21;UBERON:0004121,1.26e-07,95;UBERON:0000924,1.26e-07,95;UBERON:0006601,1.26e-07,95;UBERON:0002619,1.29e-07,17;UBERON:0001016,2.82e-07,75;UBERON:0001017,8.46e-07,73 | |||
|phase1_expression=27.0651551607102,0.697950815278722,0,0.90739263392049,1.00179145989269,2.18243053485457,1.63528848416868,1.16210991097419,13.093351160105,14.0438715793196,16.265706981423,8.61539317149633,2.05440875917447,0.524522414513984,0.666219523631325,2.02475267389826,0.699561878128147,3.15462165358238,4.11343300817216,2.12194825899015,10.5453679787327,5.36171136484781,4.96279599363977,2.07990149631429,2.06468352960453,0.57423196411502,1.29228598847722,1.07735616342945,2.66032787238923,2.52030129759931,2.88249663851896,3.81018404075779,2.46025915033828,0,4.04392267651784,3.82339684324532,2.6542016314108,0.418531630736908,0.7813353445238,1.0470474879476,0,0,0,39.5316008443313,36.2929413765862,42.5828465015101,10.9534788208725,5.66865406589161,5.93152693383074,8.94377535741704,12.8787507895334,8.62515386189829,3.6912173332702,3.62681071005672,1.00828139742739,24.182386987379,22.9226751951005,20.1112115988203,13.3528864167335,13.2247744818008,16.4796164911607,9.14880236586657,7.11435836888911,0.899899717281399,1.97773272513395,0,2.09720077362883,3.84218305321555,10.4726508431562,11.8805225731888,10.9368979902719,10.2834354385369,9.27647871996777,10.779190330916,14.6643570657902,15.6267193723704,6.60695285996332,14.6840438797966,10.752457327937,16.2220133908138,17.199676997253,15.6274011167028,6.97957497503452,11.8180148106653,11.1542720877071,11.490514833473,16.5151149726959,16.0303523409758,18.0228340132978,13.9051670596485,13.3337664802772,1.72084775396277,2.719885334831,0,0,0.448026887097336,4.49422144421606,32.0409006446749,17.1458763037893,12.3668851078619,15.0702459161048,16.6824420638613,17.8363667794652,0,4.11332977921307,4.30711771307668,2.02209778005913,2.05530983494308,6.47344709117929,4.30482203287992,11.2765462397988,12.4830846107978,10.6083128737787,9.64624899536784,15.521709341913,4.39833069653864,7.41584903203122,5.49477556295664,6.19227386364912,22.8091258425847,7.06692859073259,8.727754556434,7.45567044872489,9.36898550436951,11.51956887474,3.0654846625031,2.87556298814209,2.39961092397363,4.70159840170339,13.0317856282196,48.0375632959558,12.8167439155122,67.0961875942187,66.4860189058859,13.5062228963714,27.418773458451,29.8389336081427,5.97153458928446,2.27450482590307,5.89237196482127,17.6963802429277,11.0353010128067,18.546399369951,16.1254155084215,13.4031903328116,12.1708034270607,11.1505052226077,13.1938719076898,12.9340795759705,17.3977593754394,18.8267702855425,15.7820927347854,20.019401944243,21.2433821578522,16.2567887762275,19.1072896145753,4.21327912387941,1.80143534980301,3.6941254921427,9.52778553663309,10.5536726991493,10.4435995647389,11.3637473080901,13.7734962223183,11.2614992407786,10.4640275137684,8.58474884478781,8.87416601990488,11.6837493438571,10.0142153088248,7.94474333549386,6.14039947186396,8.34290438105992,6.44190810049784,31.1229123874908,16.9792610425819,0.660837565967596,2.64450566663544,22.6085545567348,16.4888037020911,14.8197580520407,10.8909103296605,5.78182913996663,7.41879941838981,2.84717436926707,8.23494773620054,9.29940272560997,10.7436494902221,8.77338392036041,4.49409704327111,4.53889904736858,3.18626037206988,12.8974172648096,21.0217263201901,27.0498565615393,19.1432248174595,18.6194387680921,22.5837340046826,21.8166053078688,11.6612016903886,11.7749045881031,9.50158162197864,1.1858105083486,4.00428253718626,5.70021085828289,3.14806957338795,3.04290182082754,3.61765739628625,3.8193877767213,2.30156909960649,5.18832725680113,4.66754402419738,8.62609239164127,7.07067800570156,4.36852742360385,2.77836765741823,1.79397413521912,2.8946611281802,9.79191907883005,9.47457058852424,12.385338209594,11.712410918488,10.5610611729826,11.8929442783689,10.7119638398706,8.58588050574315,18.7585821486367,18.8244986201459,16.5832959403787,13.109065177259,9.84304396635605,10.4147322178688,0,0,1.96705709207614,5.24279817978992,11.0779907091576,9.96299336033727,33.9345336929718,10.856249869788,9.4652465824877,12.4940398174924,7.75524231838076,5.73525115086125,6.90675889655422,4.24614796183249,4.85772842009873,5.84511715822624,8.30104333687699,38.8798792870387,11.3552068166615,17.8065603667255,25.736139577865,12.7026994688852,9.2921596837974,9.46844481004428,7.55808892411878,11.127699705598,9.15435867930396,10.4527950300935,13.4382712447475,15.9954840970102,13.9033977570041,8.21695570633122,5.27093042874994,4.12542172992747,6.80879211507576,14.0447653344422,13.3239444296237,11.574199891706,11.1724347194632,13.3776613201553,14.973960874793,6.08929898229199,7.74416636610244,3.81297727554876,2.64634077665954,7.4198813823666,22.7664841641227,15.2591700068234,14.5634259683826,10.669158483429,4.95517422270746,9.6421157045465,3.41741761595705,13.002372681683,15.3711457716861,5.08594833912666,3.96413260390973,1.60144721244566,3.39956859987711,3.35883485576779,3.73139929271944,3.81868247206045,16.9239756565907,17.0788352386553,12.9606408986162,10.8725913927524,8.95286511359328,9.71023293970709,10.2490285099417,4.97336289769656,6.09190374471426,3.10669656543463,2.81846469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| |||
|short_description=p2@Sept11 | |||
}} |
Revision as of 19:51, 4 August 2015
Short description: | p2@Sept11 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Sept11_5end |
Coexpression cluster: | MCL_coexpression_mm9:2 |
Association with transcript: | 41bp_to_ENSMUST00000074733, NM_001009818, uc008ydx.1, uc008ydy.1, uc008ydz.1, uc008yea.1_5end |
EntrezGene: | 52398 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 9.08e-10 | 49 |
ecto-epithelium | 2.87e-09 | 73 |
anterior neural tube | 5.76e-09 | 40 |
neurectoderm | 6.94e-09 | 64 |
neural plate | 6.94e-09 | 64 |
presumptive neural plate | 6.94e-09 | 64 |
regional part of forebrain | 7.25e-09 | 39 |
forebrain | 7.25e-09 | 39 |
future forebrain | 7.25e-09 | 39 |
structure with developmental contribution from neural crest | 9.32e-09 | 92 |
gray matter | 1.38e-08 | 34 |
brain | 1.41e-08 | 47 |
future brain | 1.41e-08 | 47 |
brain grey matter | 1.59e-08 | 29 |
regional part of telencephalon | 1.59e-08 | 29 |
telencephalon | 1.59e-08 | 29 |
regional part of nervous system | 2.96e-08 | 54 |
neural tube | 3.13e-08 | 52 |
neural rod | 3.13e-08 | 52 |
future spinal cord | 3.13e-08 | 52 |
neural keel | 3.13e-08 | 52 |
occipital lobe | 3.81e-08 | 10 |
visual cortex | 3.81e-08 | 10 |
neocortex | 3.81e-08 | 10 |
regional part of brain | 4.27e-08 | 46 |
cerebral cortex | 1.12e-07 | 21 |
cerebral hemisphere | 1.12e-07 | 21 |
pallium | 1.12e-07 | 21 |
ectoderm-derived structure | 1.26e-07 | 95 |
ectoderm | 1.26e-07 | 95 |
presumptive ectoderm | 1.26e-07 | 95 |
regional part of cerebral cortex | 1.29e-07 | 17 |
nervous system | 2.82e-07 | 75 |
central nervous system | 8.46e-07 | 73 |