FFCP PHASE1:Mm9::chr1:137271532..137271675,-: Difference between revisions
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{{FFCP|EntrezGene=77552|HGNC=|MCL_coexpression_id=176|UniProt=Q8CA71,Q8CEK6|association_with_transcript=0bp_to_ENSMUST00000159181,NM_175259,uc007ctc.1,uc007ctd.1_5end|description=CAGE_peak_1_at_Shisa4_5end|id=chr1:137271532..137271675,-|ontology_enrichment_celltype=CL:0000055!1.64e-18!50;CL:0000221!5.15e-17!44;CL:0000133!5.15e-17!44;CL:0002319!1.02e-16!43;CL:0000393!8.73e-14!39;CL:0000211!8.73e-14!39;CL:0000540!2.96e-11!33;CL:0000047!2.96e-11!33;CL:0000031!2.96e-11!33;CL:0000404!2.96e-11!33;CL:0002321!2.37e-10!70;CL:0000220!2.37e-10!70;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000333!9.72e-07!10;CL:0000095!9.72e-07!10;CL:0000243!9.72e-07!10;CL:0000123!9.72e-07!10;CL:0000125!9.72e-07!10;CL:0000030!9.72e-07!10;CL:0000339!9.72e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,4.91e-17,44;CL:0000133,4.91e-17,44;CL:0002319,9.75e-17,43;CL:0000393,8.41e-14,39;CL:0000211,8.41e-14,39;CL:0000540,2.87e-11,33;CL:0000047,2.87e-11,33;CL:0000031,2.87e-11,33;CL:0000404,2.87e-11,33;CL:0002321,3.69e-10,70;CL:0000117,4.78e-08,23;CL:0000337,4.78e-08,23;CL:0000333,9.57e-07,10;CL:0000095,9.57e-07,10;CL:0000243,9.57e-07,10;CL:0000123,9.57e-07,10;CL:0000125,9.57e-07,10;CL:0000030,9.57e-07,10;CL:0000339,9.57e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.09e-28!75;UBERON:0001016!1.09e-28!75;UBERON:0001017!2.98e-28!73;UBERON:0005743!2.98e-28!73;UBERON:0004121!4.43e-25!102;UBERON:0000924!4.43e-25!102;UBERON:0006601!4.43e-25!102;UBERON:0000033!8.27e-19!63;UBERON:0001049!4.51e-18!52;UBERON:0005068!4.51e-18!52;UBERON:0006241!4.51e-18!52;UBERON:0007135!4.51e-18!52;UBERON:0002346!5.01e-18!71;UBERON:0003075!5.01e-18!71;UBERON:0007284!5.01e-18!71;UBERON:0000955!4.02e-17!50;UBERON:0006238!4.02e-17!50;UBERON:0002616!9.68e-17!49;UBERON:0002020!1.69e-13!34;UBERON:0003056!2.05e-12!49;UBERON:0003080!6.16e-12!40;UBERON:0002780!1.71e-11!39;UBERON:0001890!1.71e-11!39;UBERON:0006240!1.71e-11!39;UBERON:0002791!3.53e-11!29;UBERON:0003528!3.53e-11!29;UBERON:0001893!3.53e-11!29;UBERON:0007811!6.48e-09!86;UBERON:0000956!1.60e-08!21;UBERON:0001869!1.60e-08!21;UBERON:0000203!1.60e-08!21;UBERON:0000153!3.82e-08!94;UBERON:0002619!5.63e-08!17;UBERON:0003076!2.97e-07!12;UBERON:0003057!2.97e-07!12|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.00e-28,75;UBERON:0001017,2.75e-28,73;UBERON:0004121,2.26e-26,95;UBERON:0000924,2.26e-26,95;UBERON:0006601,2.26e-26,95;UBERON:0002346,1.41e-19,64;UBERON:0003075,1.41e-19,64;UBERON:0007284,1.41e-19,64;UBERON:0000073,2.99e-19,54;UBERON:0001049,4.29e-18,52;UBERON:0005068,4.29e-18,52;UBERON:0006241,4.29e-18,52;UBERON:0007135,4.29e-18,52;UBERON:0010371,8.50e-17,73;UBERON:0010314,8.64e-16,92;UBERON:0000955,2.11e-15,47;UBERON:0006238,2.11e-15,47;UBERON:0002616,4.99e-15,46;UBERON:0002020,1.63e-13,34;UBERON:0003056,1.98e-12,49;UBERON:0003080,5.97e-12,40;UBERON:0002780,1.66e-11,39;UBERON:0001890,1.66e-11,39;UBERON:0006240,1.66e-11,39;UBERON:0003528,3.43e-11,29;UBERON:0002791,3.43e-11,29;UBERON:0001893,3.43e-11,29;UBERON:0000956,1.57e-08,21;UBERON:0001869,1.57e-08,21;UBERON:0000203,1.57e-08,21;UBERON:0002619,5.52e-08,17;UBERON:0003076,2.92e-07,12;UBERON:0003057,2.92e-07,12|phase1_expression=31.06887633833,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,31.721147226349,1.39007331681239,2.08959831311148,0,0.68822784320151,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,147.17338021345,153.890181591223,205.572362421083,131.441745850471,404.436665085728,458.265377184108,433.578674935652,167.563746685559,337.818526257683,0,0,0,32.4146889405293,42.406949110936,48.988848766357,54.6254444320914,47.0801971552109,43.7343668419264,135.876657359722,80.0365316500025,20.2477436388315,22.7439263390404,19.8934432184908,399.366947321033,884.470538850219,26.1297823017364,28.0812351729917,27.3422449756797,178.531865252377,145.11063140521,23.2732518508413,21.8527673921579,28.4957823849107,172.88193316904,138.923823836684,128.722274868732,53.8096053939191,50.5926669121325,42.7148963856543,143.779244485711,135.063026407603,129.878510610289,79.5497180778903,75.5993625043237,54.6150376268131,23.853750899953,84.7912904398134,10.1452571045587,2.58127163094416,0.679971333707751,1.61910957491345,0,0.448026887097336,54.0711017507245,125.436717417451,111.707981979234,102.821816182509,47.0417022054113,69.2962978037316,73.8935195149272,92.4386714099331,37.2364590539288,42.5644573998166,35.3867111510348,17.127581957859,7.50919862576798,13.0629082377046,26.8902256487511,19.485790611977,22.8309342283498,23.2112866451039,19.1669592631199,9.67632753238501,9.14621380617183,13.3031408366319,25.6537060065464,88.4864669212328,73.540225647311,47.5177748072518,3.72783522436244,60.0200633873672,68.2796264211864,4.34276993854605,0,0,0,98.4124500889685,74.5725982594361,23.2460551408799,178.865225477852,150.872119824895,107.010842948173,108.53940499233,26.4782346010822,25.7522429162893,4.54900965180614,15.1518136238261,20.6891504310699,22.0706020256134,32.0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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:77552 | |||
|HGNC= | |||
|MCL_coexpression_id=176 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8CA71,uniprot:Q8CEK6 | |||
|association_with_transcript=0bp_to_ENSMUST00000159181,NM_175259,uc007ctc.1,uc007ctd.1_5end | |||
|cluster_id=chr1:137271532..137271675,- | |||
|description=CAGE_peak_1_at_Shisa4_5end | |||
|id=chr1:137271532..137271675,- | |||
|ontology_enrichment_celltype=CL:0000055!1.64e-18!50;CL:0000221!5.15e-17!44;CL:0000133!5.15e-17!44;CL:0002319!1.02e-16!43;CL:0000393!8.73e-14!39;CL:0000211!8.73e-14!39;CL:0000540!2.96e-11!33;CL:0000047!2.96e-11!33;CL:0000031!2.96e-11!33;CL:0000404!2.96e-11!33;CL:0002321!2.37e-10!70;CL:0000220!2.37e-10!70;CL:0000117!4.88e-08!23;CL:0000337!4.88e-08!23;CL:0000333!9.72e-07!10;CL:0000095!9.72e-07!10;CL:0000243!9.72e-07!10;CL:0000123!9.72e-07!10;CL:0000125!9.72e-07!10;CL:0000030!9.72e-07!10;CL:0000339!9.72e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.91e-17,44;CL:0000133,4.91e-17,44;CL:0002319,9.75e-17,43;CL:0000393,8.41e-14,39;CL:0000211,8.41e-14,39;CL:0000540,2.87e-11,33;CL:0000047,2.87e-11,33;CL:0000031,2.87e-11,33;CL:0000404,2.87e-11,33;CL:0002321,3.69e-10,70;CL:0000117,4.78e-08,23;CL:0000337,4.78e-08,23;CL:0000333,9.57e-07,10;CL:0000095,9.57e-07,10;CL:0000243,9.57e-07,10;CL:0000123,9.57e-07,10;CL:0000125,9.57e-07,10;CL:0000030,9.57e-07,10;CL:0000339,9.57e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.09e-28!75;UBERON:0001016!1.09e-28!75;UBERON:0001017!2.98e-28!73;UBERON:0005743!2.98e-28!73;UBERON:0004121!4.43e-25!102;UBERON:0000924!4.43e-25!102;UBERON:0006601!4.43e-25!102;UBERON:0000033!8.27e-19!63;UBERON:0001049!4.51e-18!52;UBERON:0005068!4.51e-18!52;UBERON:0006241!4.51e-18!52;UBERON:0007135!4.51e-18!52;UBERON:0002346!5.01e-18!71;UBERON:0003075!5.01e-18!71;UBERON:0007284!5.01e-18!71;UBERON:0000955!4.02e-17!50;UBERON:0006238!4.02e-17!50;UBERON:0002616!9.68e-17!49;UBERON:0002020!1.69e-13!34;UBERON:0003056!2.05e-12!49;UBERON:0003080!6.16e-12!40;UBERON:0002780!1.71e-11!39;UBERON:0001890!1.71e-11!39;UBERON:0006240!1.71e-11!39;UBERON:0002791!3.53e-11!29;UBERON:0003528!3.53e-11!29;UBERON:0001893!3.53e-11!29;UBERON:0007811!6.48e-09!86;UBERON:0000956!1.60e-08!21;UBERON:0001869!1.60e-08!21;UBERON:0000203!1.60e-08!21;UBERON:0000153!3.82e-08!94;UBERON:0002619!5.63e-08!17;UBERON:0003076!2.97e-07!12;UBERON:0003057!2.97e-07!12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.00e-28,75;UBERON:0001017,2.75e-28,73;UBERON:0004121,2.26e-26,95;UBERON:0000924,2.26e-26,95;UBERON:0006601,2.26e-26,95;UBERON:0002346,1.41e-19,64;UBERON:0003075,1.41e-19,64;UBERON:0007284,1.41e-19,64;UBERON:0000073,2.99e-19,54;UBERON:0001049,4.29e-18,52;UBERON:0005068,4.29e-18,52;UBERON:0006241,4.29e-18,52;UBERON:0007135,4.29e-18,52;UBERON:0010371,8.50e-17,73;UBERON:0010314,8.64e-16,92;UBERON:0000955,2.11e-15,47;UBERON:0006238,2.11e-15,47;UBERON:0002616,4.99e-15,46;UBERON:0002020,1.63e-13,34;UBERON:0003056,1.98e-12,49;UBERON:0003080,5.97e-12,40;UBERON:0002780,1.66e-11,39;UBERON:0001890,1.66e-11,39;UBERON:0006240,1.66e-11,39;UBERON:0003528,3.43e-11,29;UBERON:0002791,3.43e-11,29;UBERON:0001893,3.43e-11,29;UBERON:0000956,1.57e-08,21;UBERON:0001869,1.57e-08,21;UBERON:0000203,1.57e-08,21;UBERON:0002619,5.52e-08,17;UBERON:0003076,2.92e-07,12;UBERON:0003057,2.92e-07,12 | |||
|phase1_expression=31.06887633833,0,0,0,0,0.33575854382378,0.233612640595526,0,0,0,0,0,0,0,0,0,0,0,0,0,31.721147226349,1.39007331681239,2.08959831311148,0,0.68822784320151,0,0,0.215471232685889,0.190023419456374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,147.17338021345,153.890181591223,205.572362421083,131.441745850471,404.436665085728,458.265377184108,433.578674935652,167.563746685559,337.818526257683,0,0,0,32.4146889405293,42.406949110936,48.988848766357,54.6254444320914,47.0801971552109,43.7343668419264,135.876657359722,80.0365316500025,20.2477436388315,22.7439263390404,19.8934432184908,399.366947321033,884.470538850219,26.1297823017364,28.0812351729917,27.3422449756797,178.531865252377,145.11063140521,23.2732518508413,21.8527673921579,28.4957823849107,172.88193316904,138.923823836684,128.722274868732,53.8096053939191,50.5926669121325,42.7148963856543,143.779244485711,135.063026407603,129.878510610289,79.5497180778903,75.5993625043237,54.6150376268131,23.853750899953,84.7912904398134,10.1452571045587,2.58127163094416,0.679971333707751,1.61910957491345,0,0.448026887097336,54.0711017507245,125.436717417451,111.707981979234,102.821816182509,47.0417022054113,69.2962978037316,73.8935195149272,92.4386714099331,37.2364590539288,42.5644573998166,35.3867111510348,17.127581957859,7.50919862576798,13.0629082377046,26.8902256487511,19.485790611977,22.8309342283498,23.2112866451039,19.1669592631199,9.67632753238501,9.14621380617183,13.3031408366319,25.6537060065464,88.4864669212328,73.540225647311,47.5177748072518,3.72783522436244,60.0200633873672,68.2796264211864,4.34276993854605,0,0,0,98.4124500889685,74.5725982594361,23.2460551408799,178.865225477852,150.872119824895,107.010842948173,108.53940499233,26.4782346010822,25.7522429162893,4.54900965180614,15.1518136238261,20.6891504310699,22.0706020256134,32.0510591053522,28.031096117443,29.051585137617,39.9714807288731,47.1319674535436,38.8055056108524,20.47895932862,18.9106080167819,20.2343792788541,25.4267049615987,15.8486932058591,18.1091126591527,16.0510066398196,22.0928036168527,0,0,0,25.6835957944022,22.7490278181663,20.7071370680167,16.3353867553795,15.7411385397923,21.4431286913456,15.3472403535269,15.8281306825775,10.8591768401468,17.6079039407424,15.7600765515931,10.2146700027778,8.47959927066927,7.90380415047782,5.09984391289413,101.990625053602,36.6340420070253,1.65209391491899,1.32225283331772,31.3533728286794,21.8302471548812,15.3352278973291,11.2942773789072,10.229390016864,11.7939888189787,4.74529061544512,9.55253937399263,11.8127548136127,8.55512829776949,10.7230247915516,5.39291645192533,3.8904848977445,3.18626037206988,31.1055357563054,19.4222471436539,25.9227792048085,19.1432248174595,19.9771061782655,15.2896087360894,30.1005916711465,15.3514553898786,17.583857518234,10.9823475890402,0.889357881261447,4.00428253718626,3.53806191203765,3.59779379815766,1.62288097110802,2.894125917029,1.52775511068852,1.15078454980324,2.10775794807546,2.47105271869273,2.87536413054709,8.18710084870708,3.74445207737473,3.28352541331245,3.94674309748207,0,6.65111484599777,18.1911755299665,15.4816727619925,17.6534889206196,13.1426539041561,7.87279409976534,11.6641384034147,14.6350235893349,23.3300013277163,28.1260155853944,23.7587605299656,9.83179888294428,13.296743603674,5.93061140184197,0,0,3.93411418415229,3.31124095565679,140.481766239318,181.326479158138,84.2625619236112,208.540985870812,46.0642000347735,43.7291393612235,62.0419385470461,76.7089841427692,92.4614497441936,87.7537245445381,56.6734982344852,65.1730563142225,48.2251089094759,60.7297288037215,16.7489300545757,32.5860054711077,28.6681048462294,37.7781581607106,17.2568679841952,23.0641604347232,30.5346792534399,25.838895926558,30.4160949667196,27.0542930190656,19.3821219876166,30.5368332761105,26.7373033788541,18.962205476149,36.8965130012496,38.1601510018291,7.14923172082955,24.8484309763208,32.8571056808196,30.2215219394545,21.8128487379996,24.9716344642899,23.0368628842969,38.9715134866687,11.7335854031855,8.47328283455281,15.2164594657924,20.7756678706265,15.1776561094151,13.148217634338,9.78853220825719,8.86360858623331,4.37221254944776,162.061713957185,2.22132145037209,13.6215332855727,8.51894825900674,3.20226376907975,2.05041341581538,2.51655990527175,0,0,0,10.5013767981662,31.7917673549041,23.7883776538413,20.8450307786076,25.9269487057941,22.9280691933486,26.9728692769641,19.2582551840033,17.275892170946,4.40690909192096,80.7741107013003,0.56369293868419,16.2973035187937,19.5241018739375,30.9177389467036,36.6813898676756,24.6675943216536,20.0680878084239,17.7077963387772,9.12276296503684,1.93267296660805,25.0586105444343,6.00421129193539,15.8125667926328,8.42229848751584,4.02754551231165,1.9692936523423,1.78813219303138,4.92801343031872,4.72606486958647,3.93769154797776,4.64861520595499,3.62974266492626,6.33476224808391,4.9068039236568,3.62318396762864,41.9451209688141,9.54539599508478,5.11368982674011,7.55480773638353,17.9666322449937,16.516057839704,25.8243790216844,12.4333659865858,677.122340447741,105.04384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| |||
|short_description=p1@Shisa4 | |||
}} |
Revision as of 20:50, 4 August 2015
Short description: | p1@Shisa4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Shisa4_5end |
Coexpression cluster: | MCL_coexpression_mm9:176 |
Association with transcript: | 0bp_to_ENSMUST00000159181, NM_175259, uc007ctc.1, uc007ctd.1_5end |
EntrezGene: | 77552 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.91e-17 | 44 |
neurectodermal cell | 4.91e-17 | 44 |
neural cell | 9.75e-17 | 43 |
electrically responsive cell | 8.41e-14 | 39 |
electrically active cell | 8.41e-14 | 39 |
neuron | 2.87e-11 | 33 |
neuronal stem cell | 2.87e-11 | 33 |
neuroblast | 2.87e-11 | 33 |
electrically signaling cell | 2.87e-11 | 33 |
embryonic cell | 3.69e-10 | 70 |
CNS neuron (sensu Vertebrata) | 4.78e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.78e-08 | 23 |
migratory neural crest cell | 9.57e-07 | 10 |
neuron associated cell | 9.57e-07 | 10 |
glial cell (sensu Vertebrata) | 9.57e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 9.57e-07 | 10 |
glial cell | 9.57e-07 | 10 |
glioblast | 9.57e-07 | 10 |
glioblast (sensu Vertebrata) | 9.57e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.00e-28 | 75 |
central nervous system | 2.75e-28 | 73 |
ectoderm-derived structure | 2.26e-26 | 95 |
ectoderm | 2.26e-26 | 95 |
presumptive ectoderm | 2.26e-26 | 95 |
neurectoderm | 1.41e-19 | 64 |
neural plate | 1.41e-19 | 64 |
presumptive neural plate | 1.41e-19 | 64 |
regional part of nervous system | 2.99e-19 | 54 |
neural tube | 4.29e-18 | 52 |
neural rod | 4.29e-18 | 52 |
future spinal cord | 4.29e-18 | 52 |
neural keel | 4.29e-18 | 52 |
ecto-epithelium | 8.50e-17 | 73 |
structure with developmental contribution from neural crest | 8.64e-16 | 92 |
brain | 2.11e-15 | 47 |
future brain | 2.11e-15 | 47 |
regional part of brain | 4.99e-15 | 46 |
gray matter | 1.63e-13 | 34 |
pre-chordal neural plate | 1.98e-12 | 49 |
anterior neural tube | 5.97e-12 | 40 |
regional part of forebrain | 1.66e-11 | 39 |
forebrain | 1.66e-11 | 39 |
future forebrain | 1.66e-11 | 39 |
brain grey matter | 3.43e-11 | 29 |
regional part of telencephalon | 3.43e-11 | 29 |
telencephalon | 3.43e-11 | 29 |
cerebral cortex | 1.57e-08 | 21 |
cerebral hemisphere | 1.57e-08 | 21 |
pallium | 1.57e-08 | 21 |
regional part of cerebral cortex | 5.52e-08 | 17 |
posterior neural tube | 2.92e-07 | 12 |
chordal neural plate | 2.92e-07 | 12 |