FFCP PHASE1:Mm9::chr12:45429951..45429996,+: Difference between revisions
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{{FFCP|EntrezGene=319504|HGNC=|MCL_coexpression_id=1|UniProt=F8WH39|association_with_transcript=0bp_to_ENSMUST00000110750_5end|description=CAGE_peak_2_at_Nrcam_5end|id=chr12:45429951..45429996,+|ontology_enrichment_celltype=CL:0000221!4.21e-18!44;CL:0000133!4.21e-18!44;CL:0002319!1.47e-17!43;CL:0000540!7.96e-16!33;CL:0000047!7.96e-16!33;CL:0000031!7.96e-16!33;CL:0000404!7.96e-16!33;CL:0000055!8.08e-13!50;CL:0000117!6.73e-12!23;CL:0000337!6.73e-12!23;CL:0000393!1.40e-11!39;CL:0000211!1.40e-11!39|ontology_enrichment_celltype_v019_2=CL:0000221,1.52e-19,44;CL:0000133,1.52e-19,44;CL:0002319,6.09e-19,43;CL:0000540,1.63e-17,33;CL:0000047,1.63e-17,33;CL:0000031,1.63e-17,33;CL:0000404,1.63e-17,33;CL:0000117,4.02e-13,23;CL:0000337,4.02e-13,23;CL:0000393,6.11e-13,39;CL:0000211,6.11e-13,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.02e-37!102;UBERON:0000924!1.02e-37!102;UBERON:0006601!1.02e-37!102;UBERON:0000073!2.26e-37!75;UBERON:0001016!2.26e-37!75;UBERON:0001017!1.29e-35!73;UBERON:0005743!1.29e-35!73;UBERON:0002346!4.89e-30!71;UBERON:0003075!4.89e-30!71;UBERON:0007284!4.89e-30!71;UBERON:0000033!1.12e-27!63;UBERON:0001049!8.11e-26!52;UBERON:0005068!8.11e-26!52;UBERON:0006241!8.11e-26!52;UBERON:0007135!8.11e-26!52;UBERON:0000955!4.57e-25!50;UBERON:0006238!4.57e-25!50;UBERON:0002616!2.30e-24!49;UBERON:0003056!1.38e-23!49;UBERON:0003080!2.57e-20!40;UBERON:0002780!1.13e-19!39;UBERON:0001890!1.13e-19!39;UBERON:0006240!1.13e-19!39;UBERON:0002020!1.43e-18!34;UBERON:0002791!6.00e-16!29;UBERON:0003528!6.00e-16!29;UBERON:0001893!6.00e-16!29;UBERON:0007811!3.05e-14!86;UBERON:0000153!6.12e-13!94;UBERON:0000956!8.60e-12!21;UBERON:0001869!8.60e-12!21;UBERON:0000203!8.60e-12!21;UBERON:0002619!3.71e-10!17;UBERON:0002021!3.45e-08!10;UBERON:0000411!3.45e-08!10;UBERON:0001950!3.45e-08!10;UBERON:0000468!1.92e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.01e-41,75;UBERON:0004121,6.72e-41,95;UBERON:0000924,6.72e-41,95;UBERON:0006601,6.72e-41,95;UBERON:0001017,4.54e-39,73;UBERON:0002346,2.88e-33,64;UBERON:0003075,2.88e-33,64;UBERON:0007284,2.88e-33,64;UBERON:0010371,9.23e-32,73;UBERON:0000073,1.03e-29,54;UBERON:0001049,4.08e-28,52;UBERON:0005068,4.08e-28,52;UBERON:0006241,4.08e-28,52;UBERON:0007135,4.08e-28,52;UBERON:0003056,3.36e-26,49;UBERON:0000955,5.52e-25,47;UBERON:0006238,5.52e-25,47;UBERON:0002616,3.22e-24,46;UBERON:0003080,1.53e-22,40;UBERON:0002780,8.00e-22,39;UBERON:0001890,8.00e-22,39;UBERON:0006240,8.00e-22,39;UBERON:0002020,1.38e-20,34;UBERON:0010314,4.06e-20,92;UBERON:0003528,1.19e-17,29;UBERON:0002791,1.19e-17,29;UBERON:0001893,1.19e-17,29;UBERON:0000956,5.29e-13,21;UBERON:0001869,5.29e-13,21;UBERON:0000203,5.29e-13,21;UBERON:0002619,3.56e-11,17;UBERON:0002021,5.64e-09,10;UBERON:0000411,5.64e-09,10;UBERON:0001950,5.64e-09,10;UBERON:0000025,3.84e-07,114|phase1_expression=25.623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2637879006672,0.397163804803541,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0.782391344348039,6.5407546914134,6.37089929929968,11.8602238435313,5.31948402176378,2.87505128729943,0,0,0,0.514518872071894,2.29226751951005,0,32.9775831201144,28.5655128806898,26.6209189472595,0.338844532069132,3.55717918444456,1.7997994345628,4.94433181283487,4.2628806896766,7.19040265244171,10.373894243682,20.3231640124616,17.010748229793,19.3498964443271,27.1368435183613,28.4920417827581,22.2933254571216,15.814502718009,11.0306254393203,72.6764814595965,82.2306457268609,70.5053987646157,34.9498662485014,36.412082153759,41.152156273984,48.5778418262403,57.4017862232314,60.6609043673936,57.1579455818915,53.95886702286,38.9574841774878,130.09760014641,160.967423027453,0,0,0,0.539703191637817,0,0,3.08977724289854,0,0,0,39.1544706979172,0,0,0,0,0,0,2.2836775943812,0.517875767294343,4.15637989381509,6.59244241711316,3.04465478312141,2.7673859670727,4.82312449768392,3.99801604261396,0.753999547978053,0.494389935468748,0.433798070759735,0,1.94120219936891,0.883366073841574,1.93950101254089,0,42.7459963636859,48.5916359807216,0,0,0,0,64.7095562228834,55.3575729410538,20.9842768028484,101.339578672097,91.290418266928,64.8298699025827,56.7844420737152,1.01839363850316,0.995255764880744,0,6.94458124425364,5.07469727554544,17.012755728077,23.4080768746954,23.2085419467001,36.3995270459604,31.1316340292185,27.0797983977616,17.8505325809921,0.646703978798527,0.378212160335639,0.527853372491847,0.876782929710299,0.834141747676794,1.0447564995665,1.02891068203972,0.59710280045548,0,0,0,0.207125772535502,0.234526059981096,0,0.473489471170421,0,0.462801338662135,0.232533944750408,0.536546802799238,0.116765342367169,0.329119699826961,0,0.162137619091711,0,0,0,92.3172874196519,29.4307191404753,0.330418782983798,0.264450566663544,1.2797295032114,1.62565670302307,1.03093969057675,0.80673409849337,1.11189021922435,0.570676878337677,0,0.988193728344065,0.754005626400808,0,0.779856348476481,0,0,0.597423819763102,1.51734320762465,3.31320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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:319504 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:F8WH39 | |||
|association_with_transcript=0bp_to_ENSMUST00000110750_5end | |||
|cluster_id=chr12:45429951..45429996,+ | |||
|description=CAGE_peak_2_at_Nrcam_5end | |||
|id=chr12:45429951..45429996,+ | |||
|ontology_enrichment_celltype=CL:0000221!4.21e-18!44;CL:0000133!4.21e-18!44;CL:0002319!1.47e-17!43;CL:0000540!7.96e-16!33;CL:0000047!7.96e-16!33;CL:0000031!7.96e-16!33;CL:0000404!7.96e-16!33;CL:0000055!8.08e-13!50;CL:0000117!6.73e-12!23;CL:0000337!6.73e-12!23;CL:0000393!1.40e-11!39;CL:0000211!1.40e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.52e-19,44;CL:0000133,1.52e-19,44;CL:0002319,6.09e-19,43;CL:0000540,1.63e-17,33;CL:0000047,1.63e-17,33;CL:0000031,1.63e-17,33;CL:0000404,1.63e-17,33;CL:0000117,4.02e-13,23;CL:0000337,4.02e-13,23;CL:0000393,6.11e-13,39;CL:0000211,6.11e-13,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.02e-37!102;UBERON:0000924!1.02e-37!102;UBERON:0006601!1.02e-37!102;UBERON:0000073!2.26e-37!75;UBERON:0001016!2.26e-37!75;UBERON:0001017!1.29e-35!73;UBERON:0005743!1.29e-35!73;UBERON:0002346!4.89e-30!71;UBERON:0003075!4.89e-30!71;UBERON:0007284!4.89e-30!71;UBERON:0000033!1.12e-27!63;UBERON:0001049!8.11e-26!52;UBERON:0005068!8.11e-26!52;UBERON:0006241!8.11e-26!52;UBERON:0007135!8.11e-26!52;UBERON:0000955!4.57e-25!50;UBERON:0006238!4.57e-25!50;UBERON:0002616!2.30e-24!49;UBERON:0003056!1.38e-23!49;UBERON:0003080!2.57e-20!40;UBERON:0002780!1.13e-19!39;UBERON:0001890!1.13e-19!39;UBERON:0006240!1.13e-19!39;UBERON:0002020!1.43e-18!34;UBERON:0002791!6.00e-16!29;UBERON:0003528!6.00e-16!29;UBERON:0001893!6.00e-16!29;UBERON:0007811!3.05e-14!86;UBERON:0000153!6.12e-13!94;UBERON:0000956!8.60e-12!21;UBERON:0001869!8.60e-12!21;UBERON:0000203!8.60e-12!21;UBERON:0002619!3.71e-10!17;UBERON:0002021!3.45e-08!10;UBERON:0000411!3.45e-08!10;UBERON:0001950!3.45e-08!10;UBERON:0000468!1.92e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.01e-41,75;UBERON:0004121,6.72e-41,95;UBERON:0000924,6.72e-41,95;UBERON:0006601,6.72e-41,95;UBERON:0001017,4.54e-39,73;UBERON:0002346,2.88e-33,64;UBERON:0003075,2.88e-33,64;UBERON:0007284,2.88e-33,64;UBERON:0010371,9.23e-32,73;UBERON:0000073,1.03e-29,54;UBERON:0001049,4.08e-28,52;UBERON:0005068,4.08e-28,52;UBERON:0006241,4.08e-28,52;UBERON:0007135,4.08e-28,52;UBERON:0003056,3.36e-26,49;UBERON:0000955,5.52e-25,47;UBERON:0006238,5.52e-25,47;UBERON:0002616,3.22e-24,46;UBERON:0003080,1.53e-22,40;UBERON:0002780,8.00e-22,39;UBERON:0001890,8.00e-22,39;UBERON:0006240,8.00e-22,39;UBERON:0002020,1.38e-20,34;UBERON:0010314,4.06e-20,92;UBERON:0003528,1.19e-17,29;UBERON:0002791,1.19e-17,29;UBERON:0001893,1.19e-17,29;UBERON:0000956,5.29e-13,21;UBERON:0001869,5.29e-13,21;UBERON:0000203,5.29e-13,21;UBERON:0002619,3.56e-11,17;UBERON:0002021,5.64e-09,10;UBERON:0000411,5.64e-09,10;UBERON:0001950,5.64e-09,10;UBERON:0000025,3.84e-07,114 | |||
|phase1_expression=25.623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,17.2637879006672,0.397163804803541,1.04479915655574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.367093504323363,0.782391344348039,6.5407546914134,6.37089929929968,11.8602238435313,5.31948402176378,2.87505128729943,0,0,0,0.514518872071894,2.29226751951005,0,32.9775831201144,28.5655128806898,26.6209189472595,0.338844532069132,3.55717918444456,1.7997994345628,4.94433181283487,4.2628806896766,7.19040265244171,10.373894243682,20.3231640124616,17.010748229793,19.3498964443271,27.1368435183613,28.4920417827581,22.2933254571216,15.814502718009,11.0306254393203,72.6764814595965,82.2306457268609,70.5053987646157,34.9498662485014,36.412082153759,41.152156273984,48.5778418262403,57.4017862232314,60.6609043673936,57.1579455818915,53.95886702286,38.9574841774878,130.09760014641,160.967423027453,0,0,0,0.539703191637817,0,0,3.08977724289854,0,0,0,39.1544706979172,0,0,0,0,0,0,2.2836775943812,0.517875767294343,4.15637989381509,6.59244241711316,3.04465478312141,2.7673859670727,4.82312449768392,3.99801604261396,0.753999547978053,0.494389935468748,0.433798070759735,0,1.94120219936891,0.883366073841574,1.93950101254089,0,42.7459963636859,48.5916359807216,0,0,0,0,64.7095562228834,55.3575729410538,20.9842768028484,101.339578672097,91.290418266928,64.8298699025827,56.7844420737152,1.01839363850316,0.995255764880744,0,6.94458124425364,5.07469727554544,17.012755728077,23.4080768746954,23.2085419467001,36.3995270459604,31.1316340292185,27.0797983977616,17.8505325809921,0.646703978798527,0.378212160335639,0.527853372491847,0.876782929710299,0.834141747676794,1.0447564995665,1.02891068203972,0.59710280045548,0,0,0,0.207125772535502,0.234526059981096,0,0.473489471170421,0,0.462801338662135,0.232533944750408,0.536546802799238,0.116765342367169,0.329119699826961,0,0.162137619091711,0,0,0,92.3172874196519,29.4307191404753,0.330418782983798,0.264450566663544,1.2797295032114,1.62565670302307,1.03093969057675,0.80673409849337,1.11189021922435,0.570676878337677,0,0.988193728344065,0.754005626400808,0,0.779856348476481,0,0,0.597423819763102,1.51734320762465,3.31320686568214,0,3.66572390121566,3.49114476901726,1.61312385747733,2.21327879934901,1.03327103585722,1.41298855057237,0.740382983530803,0,0,0.393117990226406,0,0.202860121388503,0,0.50925170356284,0.575392274901621,0,0,0,2.60498663367952,0,0.252578877947112,0,0,2.58654466233247,2.65287976478679,4.88894929326078,5.60158783058121,8.68353918667458,12.8979818230198,8.09348379012447,5.65887578787617,23.8029067600348,25.0255099303116,26.7884011344578,4.09658286789345,9.84304396635605,3.61622646453779,12.0633027151418,1.63171705145613,0,0.551873492609465,64.3807865851046,53.6829524592291,0,0.252470927204373,8.51872192423893,12.1036010731958,19.6035291936847,26.5255365727333,36.3161838754302,43.5937857414802,17.8116708736954,30.9791209385991,25.693705566524,83.222220953248,2.12910127812403,0.534196811001766,0.488660878060728,0.659880491890142,0,0.971122544619926,0.604647113929502,0,0.590603785761546,0.307435147943927,0.516856586336442,0.363533729477506,0.356497378384721,1.26414703174326,0,0,13.2771446243977,23.227881130039,14.746889951234,17.361299837559,16.847322196016,13.7343989553594,12.9993726275676,10.3518082698964,2.3467170806371,2.33015277950202,1.98475558249466,3.79238381765404,1.29171541356724,1.62844897306021,2.14870219205646,2.1338316966858,0,62.6737520795523,0.170870880797853,0.619160603889667,0.740778109478847,0,0,0,0,0,0,0,2.53068794864908,2.43983360552218,1.18805874903981,0.627264888043406,0.655087691238533,0.944050424693745,0.743881101528023,0.26175594198403,0.129614973291793,0,0.56369293868419,0.448549638131936,0.165458490457098,0.583353565032143,0.904118764344118,0.337912250981556,1.17357238645754,0.2604087696879,3.46035836604846,1.69108884578204,1.44015003128933,0,0.810900861160657,0.924398614483445,1.16928740680016,0.179026695667481,0.39736270956253,0.600977247599844,0.443068581523732,0.302899349844443,0.457240839929999,0.302478555410522,0.487289403698762,0.673482891482306,0.233753804363138,0.226730383615211,0,0.269141569828427,0,0.579568782096571,0.750729901804728,0.915758121336325,0,0,113.51512036603,108.176430579187,114.579102687879,123.562438105111,103.447460485367,98.9566005580508,97.20324003338,95.4680950835347,119.62959597183,109.765186091386,3.00983307994112,15.1629451892392,8.53668028770671,7.77941494618541,6.91723436672342,5.51530525350042,8.44537565646138,5.76898160268904,8.98573786857083,5.55933865880354,6.84394109703647,10.7517014590063,7.39767909012071,8.45132011744274,8.2132720606527,7.62069906052918,8.45955579397445,5.78727661391115,10.714233420886,6.77115032618228,6.51451579532289,9.05126611412621,11.4449371174714,8.28474574804273,10.257922465271,7.36147088657586,6.0366231048015,8.41823076601097,8.14824683075171,7.2948495315506,5.45721083371201,6.10727790728493,4.09231043169689,8.36658942404216,7.71626443924566,11.9909077410214,3.74290573512653,6.87587372954555,3.63447830930802,2.4265056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| |||
|short_description=p2@Nrcam | |||
}} |
Revision as of 01:28, 5 August 2015
Short description: | p2@Nrcam |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nrcam_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000110750_5end |
EntrezGene: | 319504 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.52e-19 | 44 |
neurectodermal cell | 1.52e-19 | 44 |
neural cell | 6.09e-19 | 43 |
neuron | 1.63e-17 | 33 |
neuronal stem cell | 1.63e-17 | 33 |
neuroblast | 1.63e-17 | 33 |
electrically signaling cell | 1.63e-17 | 33 |
CNS neuron (sensu Vertebrata) | 4.02e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.02e-13 | 23 |
electrically responsive cell | 6.11e-13 | 39 |
electrically active cell | 6.11e-13 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.01e-41 | 75 |
ectoderm-derived structure | 6.72e-41 | 95 |
ectoderm | 6.72e-41 | 95 |
presumptive ectoderm | 6.72e-41 | 95 |
central nervous system | 4.54e-39 | 73 |
neurectoderm | 2.88e-33 | 64 |
neural plate | 2.88e-33 | 64 |
presumptive neural plate | 2.88e-33 | 64 |
ecto-epithelium | 9.23e-32 | 73 |
regional part of nervous system | 1.03e-29 | 54 |
neural tube | 4.08e-28 | 52 |
neural rod | 4.08e-28 | 52 |
future spinal cord | 4.08e-28 | 52 |
neural keel | 4.08e-28 | 52 |
pre-chordal neural plate | 3.36e-26 | 49 |
brain | 5.52e-25 | 47 |
future brain | 5.52e-25 | 47 |
regional part of brain | 3.22e-24 | 46 |
anterior neural tube | 1.53e-22 | 40 |
regional part of forebrain | 8.00e-22 | 39 |
forebrain | 8.00e-22 | 39 |
future forebrain | 8.00e-22 | 39 |
gray matter | 1.38e-20 | 34 |
structure with developmental contribution from neural crest | 4.06e-20 | 92 |
brain grey matter | 1.19e-17 | 29 |
regional part of telencephalon | 1.19e-17 | 29 |
telencephalon | 1.19e-17 | 29 |
cerebral cortex | 5.29e-13 | 21 |
cerebral hemisphere | 5.29e-13 | 21 |
pallium | 5.29e-13 | 21 |
regional part of cerebral cortex | 3.56e-11 | 17 |
occipital lobe | 5.64e-09 | 10 |
visual cortex | 5.64e-09 | 10 |
neocortex | 5.64e-09 | 10 |
tube | 3.84e-07 | 114 |