FFCP PHASE1:Mm9::chr12:88225706..88225756,-: Difference between revisions
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{{FFCP|EntrezGene=238330|HGNC=|UniProt=Q8K3X4|association_with_transcript=7bp_to_ENSMUST00000038422,NM_145836,uc007oia.2_5end|description=CAGE_peak_1_at_6430527G18Rik_5end|id=chr12:88225706..88225756,-|ontology_enrichment_celltype=CL:0000221!2.18e-11!44;CL:0000133!2.18e-11!44;CL:0000540!2.31e-11!33;CL:0000047!2.31e-11!33;CL:0000031!2.31e-11!33;CL:0000404!2.31e-11!33;CL:0002319!5.36e-11!43;CL:0000393!4.59e-09!39;CL:0000211!4.59e-09!39;CL:0000055!1.84e-08!50;CL:0000117!8.82e-07!23;CL:0000337!8.82e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.18e-11,44;CL:0000133,2.18e-11,44;CL:0000540,2.31e-11,33;CL:0000047,2.31e-11,33;CL:0000031,2.31e-11,33;CL:0000404,2.31e-11,33;CL:0002319,5.36e-11,43;CL:0000393,4.59e-09,39;CL:0000211,4.59e-09,39;CL:0000117,8.82e-07,23;CL:0000337,8.82e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.84e-21!102;UBERON:0000924!2.84e-21!102;UBERON:0006601!2.84e-21!102;UBERON:0000073!2.96e-19!75;UBERON:0001016!2.96e-19!75;UBERON:0001017!4.53e-19!73;UBERON:0005743!4.53e-19!73;UBERON:0002346!1.10e-13!71;UBERON:0003075!1.10e-13!71;UBERON:0007284!1.10e-13!71;UBERON:0000033!9.30e-12!63;UBERON:0001049!1.27e-11!52;UBERON:0005068!1.27e-11!52;UBERON:0006241!1.27e-11!52;UBERON:0007135!1.27e-11!52;UBERON:0000955!8.31e-11!50;UBERON:0006238!8.31e-11!50;UBERON:0003080!1.41e-10!40;UBERON:0002780!1.91e-10!39;UBERON:0001890!1.91e-10!39;UBERON:0006240!1.91e-10!39;UBERON:0004111!2.58e-10!122;UBERON:0002616!2.81e-10!49;UBERON:0003056!5.09e-10!49;UBERON:0002020!2.93e-09!34;UBERON:0002791!1.94e-08!29;UBERON:0003528!1.94e-08!29;UBERON:0001893!1.94e-08!29;UBERON:0000025!4.74e-08!114;UBERON:0005157!3.86e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.52e-19,95;UBERON:0000924,1.52e-19,95;UBERON:0006601,1.52e-19,95;UBERON:0001016,2.96e-19,75;UBERON:0001017,4.53e-19,73;UBERON:0010314,1.87e-17,92;UBERON:0010371,2.49e-12,73;UBERON:0002346,2.82e-12,64;UBERON:0003075,2.82e-12,64;UBERON:0007284,2.82e-12,64;UBERON:0001049,1.27e-11,52;UBERON:0005068,1.27e-11,52;UBERON:0006241,1.27e-11,52;UBERON:0007135,1.27e-11,52;UBERON:0000955,2.23e-11,47;UBERON:0006238,2.23e-11,47;UBERON:0000073,3.30e-11,54;UBERON:0002616,7.87e-11,46;UBERON:0003080,1.41e-10,40;UBERON:0002780,1.91e-10,39;UBERON:0001890,1.91e-10,39;UBERON:0006240,1.91e-10,39;UBERON:0004111,2.58e-10,122;UBERON:0003056,5.09e-10,49;UBERON:0002020,2.93e-09,34;UBERON:0003528,1.94e-08,29;UBERON:0002791,1.94e-08,29;UBERON:0001893,1.94e-08,29;UBERON:0000025,4.74e-08,114|phase1_expression=47.0837610488094,4.18770489167233,1.81999695755814,28.431635862842,27.0483694171027,9.40123922706583,10.9797941079897,61.5918252816319,21.540674489205,28.0877431586392,2.91070545983358,5.42450681168288,42.9713832127326,49.0428457570575,6.66219523631325,7.69406016081339,2.09868563438444,26.0256286420546,27.9713444555707,22.4926515452956,26.788636397587,10.7234227296956,8.097193463307,8.31960598525715,4.35877634027623,2.8711598205751,4.30761996159075,4.74036711908956,11.2113817479261,12.8535366177565,2.66076612786366,3.17515336729816,3.07532393792285,0,6.64358725427932,7.14808975041517,8.37094360675713,1.25559489221072,3.1253413780952,3.14114246384279,0,0,0,19.1363163322877,23.9249557678054,24.0446245331803,26.6013057078333,35.3200753336323,25.2639110144643,27.9979054666968,22.9577731465595,33.0630898039435,26.0063039389491,87.0434570413613,67.5548536276353,35.2445427369247,25.2149427146106,24.7522604293172,81.5335337264179,107.385168792223,88.7363964908651,26.7687180334614,22.2323699027785,40.0455374190223,54.3876499411836,54.7069688508497,68.3088251981963,79.5331892015618,59.2067686281407,68.8530285491622,59.7322890237925,29.7077023779956,34.4554923884517,73.1270071313276,78.0182134088444,64.3453150627015,31.9336054898227,25.2820929408672,28.417208652405,94.2986957270886,93.3173964744579,84.9088794007519,25.684835908127,25.3243174514256,29.6428600687012,55.6848026545232,43.1386192821282,53.310241506036,28.4730486932772,48.970370949197,33.9141451780963,6.88339101585109,14.9593693415705,23.2072372404261,14.9448576012964,16.1289679355041,24.2968846827931,31.7000399995187,19.4839503452152,25.0871097902342,53.3796560953619,16.6824420638613,7.64415719119937,14.2213340630666,21.216122019099,19.0019899106324,20.7265022456061,28.8885215689222,20.7150306917737,60.7128348775133,41.9834490774049,42.3207014853876,40.1270965225542,35.7212658109715,33.7479589479473,43.2293074174084,40.7871696761717,31.2334610947009,13.2691582792481,28.9562661405862,22.9675179198809,21.3345111379498,27.9587641827183,64.4117753425404,83.9881294321955,21.2029355823131,11.8616973260861,6.59893004092748,7.62421362438388,39.5447288028732,53.5275705297793,92.7329118592939,47.6278637326837,31.1972857943003,44.4666415357459,32.6104938766193,50.7160031974575,21.397998944936,23.2504937758981,82.9140912192707,20.8192708740326,21.8406999211799,29.3501271582719,29.6888491136359,30.9566071138542,31.1316340292185,30.3593587573521,58.4669617870175,29.9639510176651,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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:238330 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q8K3X4 | |||
|association_with_transcript=7bp_to_ENSMUST00000038422,NM_145836,uc007oia.2_5end | |||
|cluster_id=chr12:88225706..88225756,- | |||
|description=CAGE_peak_1_at_6430527G18Rik_5end | |||
|id=chr12:88225706..88225756,- | |||
|ontology_enrichment_celltype=CL:0000221!2.18e-11!44;CL:0000133!2.18e-11!44;CL:0000540!2.31e-11!33;CL:0000047!2.31e-11!33;CL:0000031!2.31e-11!33;CL:0000404!2.31e-11!33;CL:0002319!5.36e-11!43;CL:0000393!4.59e-09!39;CL:0000211!4.59e-09!39;CL:0000055!1.84e-08!50;CL:0000117!8.82e-07!23;CL:0000337!8.82e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.18e-11,44;CL:0000133,2.18e-11,44;CL:0000540,2.31e-11,33;CL:0000047,2.31e-11,33;CL:0000031,2.31e-11,33;CL:0000404,2.31e-11,33;CL:0002319,5.36e-11,43;CL:0000393,4.59e-09,39;CL:0000211,4.59e-09,39;CL:0000117,8.82e-07,23;CL:0000337,8.82e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.84e-21!102;UBERON:0000924!2.84e-21!102;UBERON:0006601!2.84e-21!102;UBERON:0000073!2.96e-19!75;UBERON:0001016!2.96e-19!75;UBERON:0001017!4.53e-19!73;UBERON:0005743!4.53e-19!73;UBERON:0002346!1.10e-13!71;UBERON:0003075!1.10e-13!71;UBERON:0007284!1.10e-13!71;UBERON:0000033!9.30e-12!63;UBERON:0001049!1.27e-11!52;UBERON:0005068!1.27e-11!52;UBERON:0006241!1.27e-11!52;UBERON:0007135!1.27e-11!52;UBERON:0000955!8.31e-11!50;UBERON:0006238!8.31e-11!50;UBERON:0003080!1.41e-10!40;UBERON:0002780!1.91e-10!39;UBERON:0001890!1.91e-10!39;UBERON:0006240!1.91e-10!39;UBERON:0004111!2.58e-10!122;UBERON:0002616!2.81e-10!49;UBERON:0003056!5.09e-10!49;UBERON:0002020!2.93e-09!34;UBERON:0002791!1.94e-08!29;UBERON:0003528!1.94e-08!29;UBERON:0001893!1.94e-08!29;UBERON:0000025!4.74e-08!114;UBERON:0005157!3.86e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,1.52e-19,95;UBERON:0000924,1.52e-19,95;UBERON:0006601,1.52e-19,95;UBERON:0001016,2.96e-19,75;UBERON:0001017,4.53e-19,73;UBERON:0010314,1.87e-17,92;UBERON:0010371,2.49e-12,73;UBERON:0002346,2.82e-12,64;UBERON:0003075,2.82e-12,64;UBERON:0007284,2.82e-12,64;UBERON:0001049,1.27e-11,52;UBERON:0005068,1.27e-11,52;UBERON:0006241,1.27e-11,52;UBERON:0007135,1.27e-11,52;UBERON:0000955,2.23e-11,47;UBERON:0006238,2.23e-11,47;UBERON:0000073,3.30e-11,54;UBERON:0002616,7.87e-11,46;UBERON:0003080,1.41e-10,40;UBERON:0002780,1.91e-10,39;UBERON:0001890,1.91e-10,39;UBERON:0006240,1.91e-10,39;UBERON:0004111,2.58e-10,122;UBERON:0003056,5.09e-10,49;UBERON:0002020,2.93e-09,34;UBERON:0003528,1.94e-08,29;UBERON:0002791,1.94e-08,29;UBERON:0001893,1.94e-08,29;UBERON:0000025,4.74e-08,114 | |||
|phase1_expression=47.0837610488094,4.18770489167233,1.81999695755814,28.431635862842,27.0483694171027,9.40123922706583,10.9797941079897,61.5918252816319,21.540674489205,28.0877431586392,2.91070545983358,5.42450681168288,42.9713832127326,49.0428457570575,6.66219523631325,7.69406016081339,2.09868563438444,26.0256286420546,27.9713444555707,22.4926515452956,26.788636397587,10.7234227296956,8.097193463307,8.31960598525715,4.35877634027623,2.8711598205751,4.30761996159075,4.74036711908956,11.2113817479261,12.8535366177565,2.66076612786366,3.17515336729816,3.07532393792285,0,6.64358725427932,7.14808975041517,8.37094360675713,1.25559489221072,3.1253413780952,3.14114246384279,0,0,0,19.1363163322877,23.9249557678054,24.0446245331803,26.6013057078333,35.3200753336323,25.2639110144643,27.9979054666968,22.9577731465595,33.0630898039435,26.0063039389491,87.0434570413613,67.5548536276353,35.2445427369247,25.2149427146106,24.7522604293172,81.5335337264179,107.385168792223,88.7363964908651,26.7687180334614,22.2323699027785,40.0455374190223,54.3876499411836,54.7069688508497,68.3088251981963,79.5331892015618,59.2067686281407,68.8530285491622,59.7322890237925,29.7077023779956,34.4554923884517,73.1270071313276,78.0182134088444,64.3453150627015,31.9336054898227,25.2820929408672,28.417208652405,94.2986957270886,93.3173964744579,84.9088794007519,25.684835908127,25.3243174514256,29.6428600687012,55.6848026545232,43.1386192821282,53.310241506036,28.4730486932772,48.970370949197,33.9141451780963,6.88339101585109,14.9593693415705,23.2072372404261,14.9448576012964,16.1289679355041,24.2968846827931,31.7000399995187,19.4839503452152,25.0871097902342,53.3796560953619,16.6824420638613,7.64415719119937,14.2213340630666,21.216122019099,19.0019899106324,20.7265022456061,28.8885215689222,20.7150306917737,60.7128348775133,41.9834490774049,42.3207014853876,40.1270965225542,35.7212658109715,33.7479589479473,43.2293074174084,40.7871696761717,31.2334610947009,13.2691582792481,28.9562661405862,22.9675179198809,21.3345111379498,27.9587641827183,64.4117753425404,83.9881294321955,21.2029355823131,11.8616973260861,6.59893004092748,7.62421362438388,39.5447288028732,53.5275705297793,92.7329118592939,47.6278637326837,31.1972857943003,44.4666415357459,32.6104938766193,50.7160031974575,21.397998944936,23.2504937758981,82.9140912192707,20.8192708740326,21.8406999211799,29.3501271582719,29.6888491136359,30.9566071138542,31.1316340292185,30.3593587573521,58.4669617870175,29.9639510176651,37.2538977930604,47.1549012759383,36.605687315405,43.9314653776445,42.4867643157043,33.1309239616789,37.4184421618767,4.91549231119264,2.31613116403244,1.98914449576915,40.8037771894939,49.0159465360491,36.732660538047,46.4019681747012,44.6654806066607,41.6521204795921,37.4379651048157,36.7534559917478,36.3140214761897,43.7729200769858,43.8327129091184,43.9392947738538,51.023795611441,34.908468331277,36.2357330653004,37.8521907415429,68.019948782707,13.2167513193519,12.164726066523,26.0211665652985,19.9723537799977,19.330119198314,15.7313149206207,11.3412802360884,13.6962450801043,21.353807769503,14.822905925161,18.3474702424197,16.3144307073744,19.496408711912,17.9763881730844,16.6426298403515,19.7149860521824,46.6583036344581,28.6763766650419,37.1935527721165,34.6207257337034,33.3598277928316,38.5045651197849,45.214124043844,37.9358080307578,36.1097074035162,31.0960853082937,25.1984733024077,9.67701613153345,5.70021085828289,3.82265591054251,4.66578279193557,6.02942899381042,11.7127891819453,10.9324532231308,9.56597837972709,10.9824565275233,30.1913233707445,18.2349064357567,9.98520553966594,20.9640468696103,20.2719077279761,22.6748455040783,53.5784251483154,32.0240485892119,33.5707851470573,32.9305466403865,49.2849521405854,48.5768146581266,55.2261246855552,66.7357075673672,44.9260160702644,48.0578376537842,46.0824281420138,50.3060376177316,36.2638461918381,50.1932233277845,12.0633027151418,13.5976420954677,42.7834917526562,49.6686143348518,30.3440615076927,23.5595490050328,13.9344703570174,44.4348831879696,42.9091178406109,45.2908943384101,69.1509106722284,74.7972337591488,82.4355094104858,60.5783775888101,69.2226299864069,75.1097554832072,84.9868722585026,76.4744733083901,54.5049927199751,50.0364346304987,37.6268876106761,51.140738121486,21.2392221343941,33.0181665170775,22.3719432153916,18.2946927363221,32.483208216885,30.4360796464488,23.2585463851399,25.0838273339479,21.3898427030833,21.8065362975713,27.4088382294997,16.5016869197099,44.2571487479924,25.3886142584147,54.3306471887569,44.5821032865712,57.6355759337389,43.7003603125073,40.1499610269175,68.2001486016702,18.5390649370331,14.6164128896036,34.1819016985191,28.855094264759,36.0065671531869,20.2651427758604,22.0838836405802,22.8155850645635,15.1570035047522,29.8534736236921,21.3588600997316,47.0562058956147,28.5199572149356,9.60679130723924,12.9859516334974,9.60868327467395,27.1965487990168,24.2116012519928,26.8107949180582,22.9120948323627,33.5316153196003,27.4481280621246,20.5210147561422,21.9542710815192,17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| |||
|short_description=p1@6430527G18Rik | |||
}} |
Revision as of 10:45, 5 August 2015
Short description: | p1@6430527G18Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_6430527G18Rik_5end |
Coexpression cluster: | NA |
Association with transcript: | 7bp_to_ENSMUST00000038422, NM_145836, uc007oia.2_5end |
EntrezGene: | 238330 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.18e-11 | 44 |
neurectodermal cell | 2.18e-11 | 44 |
neuron | 2.31e-11 | 33 |
neuronal stem cell | 2.31e-11 | 33 |
neuroblast | 2.31e-11 | 33 |
electrically signaling cell | 2.31e-11 | 33 |
neural cell | 5.36e-11 | 43 |
electrically responsive cell | 4.59e-09 | 39 |
electrically active cell | 4.59e-09 | 39 |
CNS neuron (sensu Vertebrata) | 8.82e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.82e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 1.52e-19 | 95 |
ectoderm | 1.52e-19 | 95 |
presumptive ectoderm | 1.52e-19 | 95 |
nervous system | 2.96e-19 | 75 |
central nervous system | 4.53e-19 | 73 |
structure with developmental contribution from neural crest | 1.87e-17 | 92 |
ecto-epithelium | 2.49e-12 | 73 |
neurectoderm | 2.82e-12 | 64 |
neural plate | 2.82e-12 | 64 |
presumptive neural plate | 2.82e-12 | 64 |
neural tube | 1.27e-11 | 52 |
neural rod | 1.27e-11 | 52 |
future spinal cord | 1.27e-11 | 52 |
neural keel | 1.27e-11 | 52 |
brain | 2.23e-11 | 47 |
future brain | 2.23e-11 | 47 |
regional part of nervous system | 3.30e-11 | 54 |
regional part of brain | 7.87e-11 | 46 |
anterior neural tube | 1.41e-10 | 40 |
regional part of forebrain | 1.91e-10 | 39 |
forebrain | 1.91e-10 | 39 |
future forebrain | 1.91e-10 | 39 |
anatomical conduit | 2.58e-10 | 122 |
pre-chordal neural plate | 5.09e-10 | 49 |
gray matter | 2.93e-09 | 34 |
brain grey matter | 1.94e-08 | 29 |
regional part of telencephalon | 1.94e-08 | 29 |
telencephalon | 1.94e-08 | 29 |
tube | 4.74e-08 | 114 |