FFCP PHASE1:Mm9::chr1:46910327..46910416,-: Difference between revisions
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{{FFCP|EntrezGene=227059|HGNC=|MCL_coexpression_id=1407|UniProt=Q6P5F6|association_with_transcript=0bp_to_NM_172653,uc007axc.1_5end|description=CAGE_peak_1_at_Slc39a10_5end|id=chr1:46910327..46910416,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!8.26e-15!63;UBERON:0002346!2.08e-14!71;UBERON:0003075!2.08e-14!71;UBERON:0007284!2.08e-14!71;UBERON:0003056!4.59e-14!49;UBERON:0004121!4.90e-14!102;UBERON:0000924!4.90e-14!102;UBERON:0006601!4.90e-14!102;UBERON:0000153!9.52e-13!94;UBERON:0000955!3.71e-12!50;UBERON:0006238!3.71e-12!50;UBERON:0002616!1.11e-11!49;UBERON:0000073!1.65e-11!75;UBERON:0001016!1.65e-11!75;UBERON:0001049!2.51e-11!52;UBERON:0005068!2.51e-11!52;UBERON:0006241!2.51e-11!52;UBERON:0007135!2.51e-11!52;UBERON:0001017!3.15e-11!73;UBERON:0005743!3.15e-11!73;UBERON:0003080!4.69e-11!40;UBERON:0002780!1.63e-10!39;UBERON:0001890!1.63e-10!39;UBERON:0006240!1.63e-10!39;UBERON:0007811!8.63e-10!86;UBERON:0002791!6.28e-09!29;UBERON:0003528!6.28e-09!29;UBERON:0001893!6.28e-09!29;UBERON:0000468!7.16e-09!333;UBERON:0002020!8.11e-09!34;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0000922!6.37e-08!328;UBERON:0000956!9.58e-07!21;UBERON:0001869!9.58e-07!21;UBERON:0000203!9.58e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0010371,4.01e-15,73;UBERON:0002346,7.89e-15,64;UBERON:0003075,7.89e-15,64;UBERON:0007284,7.89e-15,64;UBERON:0004121,4.51e-14,95;UBERON:0000924,4.51e-14,95;UBERON:0006601,4.51e-14,95;UBERON:0003056,4.58e-14,49;UBERON:0010314,1.45e-12,92;UBERON:0000073,9.28e-12,54;UBERON:0001016,1.60e-11,75;UBERON:0001049,2.41e-11,52;UBERON:0005068,2.41e-11,52;UBERON:0006241,2.41e-11,52;UBERON:0007135,2.41e-11,52;UBERON:0000955,2.57e-11,47;UBERON:0006238,2.57e-11,47;UBERON:0001017,3.06e-11,73;UBERON:0003080,4.68e-11,40;UBERON:0002616,7.54e-11,46;UBERON:0002780,1.63e-10,39;UBERON:0001890,1.63e-10,39;UBERON:0006240,1.63e-10,39;UBERON:0003528,6.27e-09,29;UBERON:0002791,6.27e-09,29;UBERON:0001893,6.27e-09,29;UBERON:0002020,8.10e-09,34;UBERON:0000922,2.40e-08,320;UBERON:0002021,4.27e-08,10;UBERON:0000411,4.27e-08,10;UBERON:0001950,4.27e-08,10;UBERON:0000956,9.57e-07,21;UBERON:0001869,9.57e-07,21;UBERON:0000203,9.57e-07,21|phase1_expression=27.3854528549198,2.09385244583617,1.36499771816861,0.60492842261366,0.500895729946347,3.86122325397347,5.84031601488814,11.2337291394171,3.94208422024667,3.5109678948299,21.7446819646391,31.1909141671765,12.1552518251156,14.1621051918776,4.33042690360362,6.07425802169478,2.09868563438444,12.1452933662922,9.87223921961319,5.09267582157636,22.5364718900335,13.9007331681239,13.8435888243636,6.55968933452967,3.44113921600755,0.57423196411502,1.7230479846363,2.15471232685889,2.09025761402011,4.28451220591882,8.64748991555688,1.90509202037889,4.30545351309199,0,5.77703239502549,7.48055904113216,6.94175811292055,2.09265815368454,0.7813353445238,2.61761871986899,0.588231488031014,0,1.45653105909346,18.1291417884831,15.2065396829272,14.1330999164495,0,2.8343270329458,1.75748946187577,4.08302788055995,3.91961980551015,0,7.55021727259814,7.97898356212479,4.36921938885203,6.17422646486273,6.01720223871389,3.09403255366465,20.8385954685386,18.5146842745212,17.1134478946668,0.677689064138264,0,0.449949858640699,2.96659908770092,0,0.599200221036809,1.53687322128622,24.8855069540346,16.4707244764663,14.9330722559481,7.7125765789027,10.6016899656774,27.1929574257198,22.0444583341944,23.8996884518605,22.0231761998777,33.0710205640636,39.1696659803421,21.2336923245612,34.3078663509036,34.3802824567462,19.2636269310953,30.3891809417107,30.7124478031388,28.5789727909458,37.0166370077668,29.2647129945722,27.7915129532785,20.5554643490457,13.3337664802772,1.72084775396277,0,3.2382191498269,2.59910566979068,0.448026887097336,12.7804422319894,12.2709832256202,8.3131521472918,9.18682893726885,20.9856695467254,2.56652954828636,0,0,4.97929394325792,4.30711771307668,4.04419556011827,7.19358442230078,37.0281173615456,15.7348667408714,25.3288577078558,19.7902560902892,20.7553947530453,21.2518923179198,15.9920641704559,14.325991411583,12.6069433544531,11.8571472674328,16.8076004870476,12.7795811458453,10.3795513676385,11.1521308221101,5.59175283654366,33.3770108593164,29.7414323675106,3.32094171771169,8.8663192134381,3.59941638596045,3.81210681219194,52.5765144310928,60.3900795720587,39.5811209155523,104.120767795174,97.4275892428559,50.4924948279731,52.241686707818,23.9322505048243,13.1871388846699,31.084899287342,16.414464759145,65.3204623672773,47.5897356177289,59.6005649655706,42.9508730831788,33.405921083302,43.6867786171338,32.9830070450246,17.8505325809921,43.1135985865684,48.0329443626261,43.1080254201675,32.4409683992811,37.5363786454557,28.9049298213398,26.3401134602168,41.0010589646096,5.61770549850588,4.11756651383544,4.26245249093389,29.6189854725768,27.6740750777694,27.3694333420743,27.9358787990548,20.8570085652248,20.2089917882465,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:227059 | |||
|HGNC= | |||
|MCL_coexpression_id=1407 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q6P5F6 | |||
|association_with_transcript=0bp_to_NM_172653,uc007axc.1_5end | |||
|cluster_id=chr1:46910327..46910416,- | |||
|description=CAGE_peak_1_at_Slc39a10_5end | |||
|id=chr1:46910327..46910416,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!8.26e-15!63;UBERON:0002346!2.08e-14!71;UBERON:0003075!2.08e-14!71;UBERON:0007284!2.08e-14!71;UBERON:0003056!4.59e-14!49;UBERON:0004121!4.90e-14!102;UBERON:0000924!4.90e-14!102;UBERON:0006601!4.90e-14!102;UBERON:0000153!9.52e-13!94;UBERON:0000955!3.71e-12!50;UBERON:0006238!3.71e-12!50;UBERON:0002616!1.11e-11!49;UBERON:0000073!1.65e-11!75;UBERON:0001016!1.65e-11!75;UBERON:0001049!2.51e-11!52;UBERON:0005068!2.51e-11!52;UBERON:0006241!2.51e-11!52;UBERON:0007135!2.51e-11!52;UBERON:0001017!3.15e-11!73;UBERON:0005743!3.15e-11!73;UBERON:0003080!4.69e-11!40;UBERON:0002780!1.63e-10!39;UBERON:0001890!1.63e-10!39;UBERON:0006240!1.63e-10!39;UBERON:0007811!8.63e-10!86;UBERON:0002791!6.28e-09!29;UBERON:0003528!6.28e-09!29;UBERON:0001893!6.28e-09!29;UBERON:0000468!7.16e-09!333;UBERON:0002020!8.11e-09!34;UBERON:0002021!4.27e-08!10;UBERON:0000411!4.27e-08!10;UBERON:0001950!4.27e-08!10;UBERON:0000922!6.37e-08!328;UBERON:0000956!9.58e-07!21;UBERON:0001869!9.58e-07!21;UBERON:0000203!9.58e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,4.01e-15,73;UBERON:0002346,7.89e-15,64;UBERON:0003075,7.89e-15,64;UBERON:0007284,7.89e-15,64;UBERON:0004121,4.51e-14,95;UBERON:0000924,4.51e-14,95;UBERON:0006601,4.51e-14,95;UBERON:0003056,4.58e-14,49;UBERON:0010314,1.45e-12,92;UBERON:0000073,9.28e-12,54;UBERON:0001016,1.60e-11,75;UBERON:0001049,2.41e-11,52;UBERON:0005068,2.41e-11,52;UBERON:0006241,2.41e-11,52;UBERON:0007135,2.41e-11,52;UBERON:0000955,2.57e-11,47;UBERON:0006238,2.57e-11,47;UBERON:0001017,3.06e-11,73;UBERON:0003080,4.68e-11,40;UBERON:0002616,7.54e-11,46;UBERON:0002780,1.63e-10,39;UBERON:0001890,1.63e-10,39;UBERON:0006240,1.63e-10,39;UBERON:0003528,6.27e-09,29;UBERON:0002791,6.27e-09,29;UBERON:0001893,6.27e-09,29;UBERON:0002020,8.10e-09,34;UBERON:0000922,2.40e-08,320;UBERON:0002021,4.27e-08,10;UBERON:0000411,4.27e-08,10;UBERON:0001950,4.27e-08,10;UBERON:0000956,9.57e-07,21;UBERON:0001869,9.57e-07,21;UBERON:0000203,9.57e-07,21 | |||
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| |||
|short_description=p1@Slc39a10 | |||
}} |
Revision as of 17:09, 5 August 2015
Short description: | p1@Slc39a10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc39a10_5end |
Coexpression cluster: | MCL_coexpression_mm9:1407 |
Association with transcript: | 0bp_to_NM_172653, uc007axc.1_5end |
EntrezGene: | 227059 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 4.01e-15 | 73 |
neurectoderm | 7.89e-15 | 64 |
neural plate | 7.89e-15 | 64 |
presumptive neural plate | 7.89e-15 | 64 |
ectoderm-derived structure | 4.51e-14 | 95 |
ectoderm | 4.51e-14 | 95 |
presumptive ectoderm | 4.51e-14 | 95 |
pre-chordal neural plate | 4.58e-14 | 49 |
structure with developmental contribution from neural crest | 1.45e-12 | 92 |
regional part of nervous system | 9.28e-12 | 54 |
nervous system | 1.60e-11 | 75 |
neural tube | 2.41e-11 | 52 |
neural rod | 2.41e-11 | 52 |
future spinal cord | 2.41e-11 | 52 |
neural keel | 2.41e-11 | 52 |
brain | 2.57e-11 | 47 |
future brain | 2.57e-11 | 47 |
central nervous system | 3.06e-11 | 73 |
anterior neural tube | 4.68e-11 | 40 |
regional part of brain | 7.54e-11 | 46 |
regional part of forebrain | 1.63e-10 | 39 |
forebrain | 1.63e-10 | 39 |
future forebrain | 1.63e-10 | 39 |
brain grey matter | 6.27e-09 | 29 |
regional part of telencephalon | 6.27e-09 | 29 |
telencephalon | 6.27e-09 | 29 |
gray matter | 8.10e-09 | 34 |
embryo | 2.40e-08 | 320 |
occipital lobe | 4.27e-08 | 10 |
visual cortex | 4.27e-08 | 10 |
neocortex | 4.27e-08 | 10 |
cerebral cortex | 9.57e-07 | 21 |
cerebral hemisphere | 9.57e-07 | 21 |
pallium | 9.57e-07 | 21 |