FFCP PHASE1:Mm9::chr4:82505475..82505583,-: Difference between revisions
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{{FFCP|EntrezGene=68268|HGNC=|UniProt=Q9D270,Q5SRP0,Q5SRN8|association_with_transcript=0bp_to_ENSMUST00000030110,ENSMUST00000156055,NM_026647,uc008tkj.2,uc008tkk.2,uc012dgn.1_5end|description=CAGE_peak_1_at_Zdhhc21_5end|id=chr4:82505475..82505583,-|ontology_enrichment_celltype=CL:0000117!7.08e-09!23;CL:0000337!7.08e-09!23;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,7.06e-09,23;CL:0000337,7.06e-09,23;CL:0000540,1.03e-08,33;CL:0000047,1.03e-08,33;CL:0000031,1.03e-08,33;CL:0000404,1.03e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.12e-17!102;UBERON:0000924!1.12e-17!102;UBERON:0006601!1.12e-17!102;UBERON:0000033!1.28e-16!63;UBERON:0001017!1.26e-15!73;UBERON:0005743!1.26e-15!73;UBERON:0001049!3.62e-15!52;UBERON:0005068!3.62e-15!52;UBERON:0006241!3.62e-15!52;UBERON:0007135!3.62e-15!52;UBERON:0000073!4.46e-15!75;UBERON:0001016!4.46e-15!75;UBERON:0002346!3.43e-14!71;UBERON:0003075!3.43e-14!71;UBERON:0007284!3.43e-14!71;UBERON:0000955!5.06e-14!50;UBERON:0006238!5.06e-14!50;UBERON:0007811!1.35e-13!86;UBERON:0002616!1.76e-13!49;UBERON:0000153!2.23e-13!94;UBERON:0003056!4.77e-13!49;UBERON:0002020!3.26e-12!34;UBERON:0003080!4.38e-11!40;UBERON:0002780!1.15e-10!39;UBERON:0001890!1.15e-10!39;UBERON:0006240!1.15e-10!39;UBERON:0002791!2.43e-09!29;UBERON:0003528!2.43e-09!29;UBERON:0001893!2.43e-09!29;UBERON:0000468!3.07e-09!333;UBERON:0000922!1.96e-08!328;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0010371,5.60e-22,73;UBERON:0004121,1.07e-20,95;UBERON:0000924,1.07e-20,95;UBERON:0006601,1.07e-20,95;UBERON:0002346,1.24e-17,64;UBERON:0003075,1.24e-17,64;UBERON:0007284,1.24e-17,64;UBERON:0000073,1.90e-16,54;UBERON:0001017,1.25e-15,73;UBERON:0001049,3.60e-15,52;UBERON:0005068,3.60e-15,52;UBERON:0006241,3.60e-15,52;UBERON:0007135,3.60e-15,52;UBERON:0001016,4.44e-15,75;UBERON:0003056,4.76e-13,49;UBERON:0010314,9.55e-13,92;UBERON:0000955,2.48e-12,47;UBERON:0006238,2.48e-12,47;UBERON:0002020,3.25e-12,34;UBERON:0002616,8.27e-12,46;UBERON:0003080,4.36e-11,40;UBERON:0002780,1.15e-10,39;UBERON:0001890,1.15e-10,39;UBERON:0006240,1.15e-10,39;UBERON:0003528,2.43e-09,29;UBERON:0002791,2.43e-09,29;UBERON:0001893,2.43e-09,29;UBERON:0000922,6.26e-09,320;UBERON:0002021,1.38e-07,10;UBERON:0000411,1.38e-07,10;UBERON:0001950,1.38e-07,10|phase1_expression=8.32774004944929,1.74487703819681,0,2.11724947914781,2.00358291978539,2.51818907867835,1.86890112476421,2.96983643915625,0.422366166455,0.936258105287974,5.99262888789267,4.86610169871552,3.42401459862411,1.92324885321794,1.99865857089398,1.82227740650843,0.699561878128147,2.99689057090326,2.05671650408608,2.54633791078818,6.37824676133023,2.58156473122302,2.35079810225042,1.91990907352088,2.2940928106717,2.8711598205751,0.86152399231815,2.37018355954478,3.04037471130198,2.77233142735924,3.76941868114018,1.27006134691926,5.53558308826113,0,4.91047753577167,5.15327400611326,6.12508068787107,0.837063261473815,0,0,2.35292595212406,0,0,1.6366586336825,2.93993100536592,1.46837401729345,3.12956537739216,3.92445281484804,1.09843091367236,4.86074747685709,1.67983705950435,1.43752564364972,1.00669563634642,2.90144856804538,3.6970317905671,1.54355661621568,2.0057340795713,1.54701627683233,10.9250888864183,6.87688273053643,11.4089652631112,2.03306719241479,0.889294796111139,0.899899717281399,0,0.7104801149461,2.39680088414724,1.92109152660777,7.25827286159344,4.86021377994086,6.94072372459561,15.4251531578054,11.2642955885323,7.83941114975706,5.17565543498476,8.27296907949019,14.3150645299205,12.1302971180928,13.3637683932932,7.12185953743047,9.42322729104819,12.5019208933622,8.93385596804419,7.31591393041184,10.0846843532695,15.6153150301044,15.0913981647049,11.5567656411686,4.69502398665741,4.60986516651392,2.6087803983151,1.72084775396277,0.679971333707751,2.69851595818909,5.84798775702902,3.58421509677868,4.0728881838208,1.70430322578058,1.55871602761721,0.70667914902068,11.6900038414645,5.13305909657271,30.5766287647975,0,3.89683873820185,6.08063677140237,7.07734223020697,3.4255163915718,3.88406825470758,3.71105347662062,3.81667718885499,3.34912026143355,3.92046345335299,2.86373017049983,4.58595957829249,3.89566433121994,4.44950941921873,2.16899035379867,3.5384422077995,4.36770494858005,6.18356251689102,4.84875253135222,5.59175283654366,10.8328894894272,15.4990563041957,2.04365644166873,2.27648736561249,2.39961092397363,2.54140454146129,9.73639156131348,9.60751265919116,8.16753288733619,13.0368240144207,14.3200656104985,9.14267396062064,9.89671704713322,6.31404055871961,4.85187185379363,4.80173241023982,4.20883711772948,7.54698569183682,5.74755261083682,7.02242306240862,9.79581315932148,11.0899493616664,11.7864622662062,11.2442069471675,7.76110112217047,4.52692785158969,5.48407632486676,6.33424046990216,7.01426343768239,6.39508673218875,5.57203466435466,6.79081050146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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:68268 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q9D270,uniprot:Q5SRP0,uniprot:Q5SRN8 | |||
|association_with_transcript=0bp_to_ENSMUST00000030110,ENSMUST00000156055,NM_026647,uc008tkj.2,uc008tkk.2,uc012dgn.1_5end | |||
|cluster_id=chr4:82505475..82505583,- | |||
|description=CAGE_peak_1_at_Zdhhc21_5end | |||
|id=chr4:82505475..82505583,- | |||
|ontology_enrichment_celltype=CL:0000117!7.08e-09!23;CL:0000337!7.08e-09!23;CL:0000540!1.03e-08!33;CL:0000047!1.03e-08!33;CL:0000031!1.03e-08!33;CL:0000404!1.03e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.06e-09,23;CL:0000337,7.06e-09,23;CL:0000540,1.03e-08,33;CL:0000047,1.03e-08,33;CL:0000031,1.03e-08,33;CL:0000404,1.03e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.12e-17!102;UBERON:0000924!1.12e-17!102;UBERON:0006601!1.12e-17!102;UBERON:0000033!1.28e-16!63;UBERON:0001017!1.26e-15!73;UBERON:0005743!1.26e-15!73;UBERON:0001049!3.62e-15!52;UBERON:0005068!3.62e-15!52;UBERON:0006241!3.62e-15!52;UBERON:0007135!3.62e-15!52;UBERON:0000073!4.46e-15!75;UBERON:0001016!4.46e-15!75;UBERON:0002346!3.43e-14!71;UBERON:0003075!3.43e-14!71;UBERON:0007284!3.43e-14!71;UBERON:0000955!5.06e-14!50;UBERON:0006238!5.06e-14!50;UBERON:0007811!1.35e-13!86;UBERON:0002616!1.76e-13!49;UBERON:0000153!2.23e-13!94;UBERON:0003056!4.77e-13!49;UBERON:0002020!3.26e-12!34;UBERON:0003080!4.38e-11!40;UBERON:0002780!1.15e-10!39;UBERON:0001890!1.15e-10!39;UBERON:0006240!1.15e-10!39;UBERON:0002791!2.43e-09!29;UBERON:0003528!2.43e-09!29;UBERON:0001893!2.43e-09!29;UBERON:0000468!3.07e-09!333;UBERON:0000922!1.96e-08!328;UBERON:0002021!1.38e-07!10;UBERON:0000411!1.38e-07!10;UBERON:0001950!1.38e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,5.60e-22,73;UBERON:0004121,1.07e-20,95;UBERON:0000924,1.07e-20,95;UBERON:0006601,1.07e-20,95;UBERON:0002346,1.24e-17,64;UBERON:0003075,1.24e-17,64;UBERON:0007284,1.24e-17,64;UBERON:0000073,1.90e-16,54;UBERON:0001017,1.25e-15,73;UBERON:0001049,3.60e-15,52;UBERON:0005068,3.60e-15,52;UBERON:0006241,3.60e-15,52;UBERON:0007135,3.60e-15,52;UBERON:0001016,4.44e-15,75;UBERON:0003056,4.76e-13,49;UBERON:0010314,9.55e-13,92;UBERON:0000955,2.48e-12,47;UBERON:0006238,2.48e-12,47;UBERON:0002020,3.25e-12,34;UBERON:0002616,8.27e-12,46;UBERON:0003080,4.36e-11,40;UBERON:0002780,1.15e-10,39;UBERON:0001890,1.15e-10,39;UBERON:0006240,1.15e-10,39;UBERON:0003528,2.43e-09,29;UBERON:0002791,2.43e-09,29;UBERON:0001893,2.43e-09,29;UBERON:0000922,6.26e-09,320;UBERON:0002021,1.38e-07,10;UBERON:0000411,1.38e-07,10;UBERON:0001950,1.38e-07,10 | |||
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| |||
|short_description=p1@Zdhhc21 | |||
}} |
Revision as of 18:28, 5 August 2015
Short description: | p1@Zdhhc21 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Zdhhc21_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000030110, ENSMUST00000156055, NM_026647, uc008tkj.2, uc008tkk.2, uc012dgn.1_5end |
EntrezGene: | 68268 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.06e-09 | 23 |
neuroblast (sensu Vertebrata) | 7.06e-09 | 23 |
neuron | 1.03e-08 | 33 |
neuronal stem cell | 1.03e-08 | 33 |
neuroblast | 1.03e-08 | 33 |
electrically signaling cell | 1.03e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 5.60e-22 | 73 |
ectoderm-derived structure | 1.07e-20 | 95 |
ectoderm | 1.07e-20 | 95 |
presumptive ectoderm | 1.07e-20 | 95 |
neurectoderm | 1.24e-17 | 64 |
neural plate | 1.24e-17 | 64 |
presumptive neural plate | 1.24e-17 | 64 |
regional part of nervous system | 1.90e-16 | 54 |
central nervous system | 1.25e-15 | 73 |
neural tube | 3.60e-15 | 52 |
neural rod | 3.60e-15 | 52 |
future spinal cord | 3.60e-15 | 52 |
neural keel | 3.60e-15 | 52 |
nervous system | 4.44e-15 | 75 |
pre-chordal neural plate | 4.76e-13 | 49 |
structure with developmental contribution from neural crest | 9.55e-13 | 92 |
brain | 2.48e-12 | 47 |
future brain | 2.48e-12 | 47 |
gray matter | 3.25e-12 | 34 |
regional part of brain | 8.27e-12 | 46 |
anterior neural tube | 4.36e-11 | 40 |
regional part of forebrain | 1.15e-10 | 39 |
forebrain | 1.15e-10 | 39 |
future forebrain | 1.15e-10 | 39 |
brain grey matter | 2.43e-09 | 29 |
regional part of telencephalon | 2.43e-09 | 29 |
telencephalon | 2.43e-09 | 29 |
embryo | 6.26e-09 | 320 |
occipital lobe | 1.38e-07 | 10 |
visual cortex | 1.38e-07 | 10 |
neocortex | 1.38e-07 | 10 |