FFCP PHASE1:Mm9::chr1:63492289..63492339,+: Difference between revisions
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{{FFCP|EntrezGene=23792|HGNC=|MCL_coexpression_id=873|UniProt=Q5SRA0|association_with_transcript=-125bp_to_ENSMUST00000114103_5end|description=CAGE_peak_2_at_Adam23_5end|id=chr1:63492289..63492339,+|ontology_enrichment_celltype=CL:0000393!2.22e-13!39;CL:0000211!2.22e-13!39;CL:0000540!7.58e-13!33;CL:0000047!7.58e-13!33;CL:0000031!7.58e-13!33;CL:0000404!7.58e-13!33;CL:0000117!1.22e-10!23;CL:0000337!1.22e-10!23;CL:0000055!4.53e-10!50;CL:0000221!1.92e-09!44;CL:0000133!1.92e-09!44;CL:0002319!5.63e-09!43|ontology_enrichment_celltype_v019_2=CL:0000393,1.29e-13,39;CL:0000211,1.29e-13,39;CL:0000540,1.39e-13,33;CL:0000047,1.39e-13,33;CL:0000031,1.39e-13,33;CL:0000404,1.39e-13,33;CL:0000117,3.12e-11,23;CL:0000337,3.12e-11,23;CL:0000221,7.31e-10,44;CL:0000133,7.31e-10,44;CL:0002319,2.28e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0001017!7.57e-24!73;UBERON:0005743!7.57e-24!73;UBERON:0000073!3.56e-23!75;UBERON:0001016!3.56e-23!75;UBERON:0002346!1.81e-21!71;UBERON:0003075!1.81e-21!71;UBERON:0007284!1.81e-21!71;UBERON:0001049!7.78e-19!52;UBERON:0005068!7.78e-19!52;UBERON:0006241!7.78e-19!52;UBERON:0007135!7.78e-19!52;UBERON:0000033!1.13e-18!63;UBERON:0000955!2.15e-17!50;UBERON:0006238!2.15e-17!50;UBERON:0002616!7.27e-17!49;UBERON:0003056!3.38e-16!49;UBERON:0002020!2.82e-15!34;UBERON:0003080!2.74e-14!40;UBERON:0002780!1.02e-13!39;UBERON:0001890!1.02e-13!39;UBERON:0006240!1.02e-13!39;UBERON:0002791!2.94e-12!29;UBERON:0003528!2.94e-12!29;UBERON:0001893!2.94e-12!29;UBERON:0007811!1.05e-11!86;UBERON:0000153!2.89e-11!94;UBERON:0000956!1.38e-08!21;UBERON:0001869!1.38e-08!21;UBERON:0000203!1.38e-08!21;UBERON:0000025!4.09e-08!114;UBERON:0002619!5.93e-08!17;UBERON:0004111!6.16e-08!122;UBERON:0000468!1.10e-07!333;UBERON:0002021!2.14e-07!10;UBERON:0000411!2.14e-07!10;UBERON:0001950!2.14e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.29e-26,95;UBERON:0000924,7.29e-26,95;UBERON:0006601,7.29e-26,95;UBERON:0001017,3.52e-25,73;UBERON:0001016,1.83e-24,75;UBERON:0002346,9.69e-23,64;UBERON:0003075,9.69e-23,64;UBERON:0007284,9.69e-23,64;UBERON:0010371,2.73e-22,73;UBERON:0000073,3.90e-21,54;UBERON:0001049,6.58e-20,52;UBERON:0005068,6.58e-20,52;UBERON:0006241,6.58e-20,52;UBERON:0007135,6.58e-20,52;UBERON:0003056,6.92e-17,49;UBERON:0000955,1.41e-16,47;UBERON:0006238,1.41e-16,47;UBERON:0002616,4.99e-16,46;UBERON:0002020,7.22e-16,34;UBERON:0010314,6.64e-15,92;UBERON:0003080,7.56e-15,40;UBERON:0002780,3.06e-14,39;UBERON:0001890,3.06e-14,39;UBERON:0006240,3.06e-14,39;UBERON:0003528,1.14e-12,29;UBERON:0002791,1.14e-12,29;UBERON:0001893,1.14e-12,29;UBERON:0000956,8.97e-09,21;UBERON:0001869,8.97e-09,21;UBERON:0000203,8.97e-09,21;UBERON:0002619,4.37e-08,17;UBERON:0002021,8.89e-08,10;UBERON:0000411,8.89e-08,10;UBERON:0001950,8.89e-08,10|phase1_expression=2.5623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,1.33243904726265,0.404950534779652,0,0.315462165358238,1.23402990245165,0.84877930359606,2.46625541438102,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0.504060259519861,0,0,0,0,0,0,0,0,0,0,0,0,0,9.19046771221714,9.32667767219534,6.79122982998222,0,1.30815093828268,0.659058548203415,1.74986909166855,0.699932108126813,0,0,0,0.336093799142464,0.514518872071894,0.85960031981627,6.70373719960675,8.49729135610311,14.8117474196169,6.97214543856797,1.0165335962074,0,0,0.988866362566974,0,2.09720077362883,1.53687322128622,2.28117147078651,4.05017814995072,2.10324961351382,12.2829923293636,12.3686382932904,4.16468717330844,3.64212789869298,4.5960939330501,16.5173821499083,9.19348834213351,10.2916377281683,10.4190167306853,8.23388792421687,9.37644067002168,8.65467296904281,9.00420176050688,9.77908785771585,20.6240009831567,13.3829379951157,10.2519695203915,0.151452386666368,2.79614772395106,7.53647670624362,5.16254326188832,0,0,0,0.896053774194671,1.54488862144927,6.30592193538814,5.97507810586598,4.24007489412408,10.7040999030277,23.0987659345772,20.3844191765317,35.5533351576666,0,0,0,0.79928715803342,6.21450920753212,5.34391700633369,1.56136794089522,3.34912026143355,1.38369298353635,2.11011696773672,3.52766121407114,0.628332956648377,7.41584903203122,1.87979163995885,0,2.10296904931632,0.441683036920787,0,0,17.2740670236813,18.2218634927706,0,0,0,0,11.9832511523858,11.8950156732843,5.40313714085317,15.4703644971126,13.2972037811772,13.9217989854905,11.1946471516753,2.95334155165917,0.995255764880744,1.51633655060205,2.73574412652416,3.513251959993,1.37941262660084,3.42118046630164,3.76762044589288,4.89862793889561,6.14945857367279,5.34099829990454,6.72628763921441,1.07783996466421,1.51284864134255,2.99116911078713,0.657587197282725,0.556094498451196,1.0447564995665,1.64625709126355,0.796137067273973,0,0,0,0.621377317606506,0.703578179943289,0.540186184383045,1.65721314909647,0.787056926989615,1.54267112887378,0.232533944750408,1.3413670069981,1.16765342367169,0.822799249567402,0.164167464079095,1.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:23792 | |||
|HGNC= | |||
|MCL_coexpression_id=873 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:Q5SRA0 | |||
|association_with_transcript=-125bp_to_ENSMUST00000114103_5end | |||
|cluster_id=chr1:63492289..63492339,+ | |||
|description=CAGE_peak_2_at_Adam23_5end | |||
|id=chr1:63492289..63492339,+ | |||
|ontology_enrichment_celltype=CL:0000393!2.22e-13!39;CL:0000211!2.22e-13!39;CL:0000540!7.58e-13!33;CL:0000047!7.58e-13!33;CL:0000031!7.58e-13!33;CL:0000404!7.58e-13!33;CL:0000117!1.22e-10!23;CL:0000337!1.22e-10!23;CL:0000055!4.53e-10!50;CL:0000221!1.92e-09!44;CL:0000133!1.92e-09!44;CL:0002319!5.63e-09!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.29e-13,39;CL:0000211,1.29e-13,39;CL:0000540,1.39e-13,33;CL:0000047,1.39e-13,33;CL:0000031,1.39e-13,33;CL:0000404,1.39e-13,33;CL:0000117,3.12e-11,23;CL:0000337,3.12e-11,23;CL:0000221,7.31e-10,44;CL:0000133,7.31e-10,44;CL:0002319,2.28e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.05e-25!102;UBERON:0000924!1.05e-25!102;UBERON:0006601!1.05e-25!102;UBERON:0001017!7.57e-24!73;UBERON:0005743!7.57e-24!73;UBERON:0000073!3.56e-23!75;UBERON:0001016!3.56e-23!75;UBERON:0002346!1.81e-21!71;UBERON:0003075!1.81e-21!71;UBERON:0007284!1.81e-21!71;UBERON:0001049!7.78e-19!52;UBERON:0005068!7.78e-19!52;UBERON:0006241!7.78e-19!52;UBERON:0007135!7.78e-19!52;UBERON:0000033!1.13e-18!63;UBERON:0000955!2.15e-17!50;UBERON:0006238!2.15e-17!50;UBERON:0002616!7.27e-17!49;UBERON:0003056!3.38e-16!49;UBERON:0002020!2.82e-15!34;UBERON:0003080!2.74e-14!40;UBERON:0002780!1.02e-13!39;UBERON:0001890!1.02e-13!39;UBERON:0006240!1.02e-13!39;UBERON:0002791!2.94e-12!29;UBERON:0003528!2.94e-12!29;UBERON:0001893!2.94e-12!29;UBERON:0007811!1.05e-11!86;UBERON:0000153!2.89e-11!94;UBERON:0000956!1.38e-08!21;UBERON:0001869!1.38e-08!21;UBERON:0000203!1.38e-08!21;UBERON:0000025!4.09e-08!114;UBERON:0002619!5.93e-08!17;UBERON:0004111!6.16e-08!122;UBERON:0000468!1.10e-07!333;UBERON:0002021!2.14e-07!10;UBERON:0000411!2.14e-07!10;UBERON:0001950!2.14e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,7.29e-26,95;UBERON:0000924,7.29e-26,95;UBERON:0006601,7.29e-26,95;UBERON:0001017,3.52e-25,73;UBERON:0001016,1.83e-24,75;UBERON:0002346,9.69e-23,64;UBERON:0003075,9.69e-23,64;UBERON:0007284,9.69e-23,64;UBERON:0010371,2.73e-22,73;UBERON:0000073,3.90e-21,54;UBERON:0001049,6.58e-20,52;UBERON:0005068,6.58e-20,52;UBERON:0006241,6.58e-20,52;UBERON:0007135,6.58e-20,52;UBERON:0003056,6.92e-17,49;UBERON:0000955,1.41e-16,47;UBERON:0006238,1.41e-16,47;UBERON:0002616,4.99e-16,46;UBERON:0002020,7.22e-16,34;UBERON:0010314,6.64e-15,92;UBERON:0003080,7.56e-15,40;UBERON:0002780,3.06e-14,39;UBERON:0001890,3.06e-14,39;UBERON:0006240,3.06e-14,39;UBERON:0003528,1.14e-12,29;UBERON:0002791,1.14e-12,29;UBERON:0001893,1.14e-12,29;UBERON:0000956,8.97e-09,21;UBERON:0001869,8.97e-09,21;UBERON:0000203,8.97e-09,21;UBERON:0002619,4.37e-08,17;UBERON:0002021,8.89e-08,10;UBERON:0000411,8.89e-08,10;UBERON:0001950,8.89e-08,10 | |||
|phase1_expression=2.5623815536767,0,0,0,0,0,0,0,0,0,0,0,0,0.0874204024189974,1.33243904726265,0.404950534779652,0,0.315462165358238,1.23402990245165,0.84877930359606,2.46625541438102,0,0,0.159992422793407,0.22940928106717,0,0,0,0,0.504060259519861,0,0,0,0,0,0,0,0,0,0,0,0,0,9.19046771221714,9.32667767219534,6.79122982998222,0,1.30815093828268,0.659058548203415,1.74986909166855,0.699932108126813,0,0,0,0.336093799142464,0.514518872071894,0.85960031981627,6.70373719960675,8.49729135610311,14.8117474196169,6.97214543856797,1.0165335962074,0,0,0.988866362566974,0,2.09720077362883,1.53687322128622,2.28117147078651,4.05017814995072,2.10324961351382,12.2829923293636,12.3686382932904,4.16468717330844,3.64212789869298,4.5960939330501,16.5173821499083,9.19348834213351,10.2916377281683,10.4190167306853,8.23388792421687,9.37644067002168,8.65467296904281,9.00420176050688,9.77908785771585,20.6240009831567,13.3829379951157,10.2519695203915,0.151452386666368,2.79614772395106,7.53647670624362,5.16254326188832,0,0,0,0.896053774194671,1.54488862144927,6.30592193538814,5.97507810586598,4.24007489412408,10.7040999030277,23.0987659345772,20.3844191765317,35.5533351576666,0,0,0,0.79928715803342,6.21450920753212,5.34391700633369,1.56136794089522,3.34912026143355,1.38369298353635,2.11011696773672,3.52766121407114,0.628332956648377,7.41584903203122,1.87979163995885,0,2.10296904931632,0.441683036920787,0,0,17.2740670236813,18.2218634927706,0,0,0,0,11.9832511523858,11.8950156732843,5.40313714085317,15.4703644971126,13.2972037811772,13.9217989854905,11.1946471516753,2.95334155165917,0.995255764880744,1.51633655060205,2.73574412652416,3.513251959993,1.37941262660084,3.42118046630164,3.76762044589288,4.89862793889561,6.14945857367279,5.34099829990454,6.72628763921441,1.07783996466421,1.51284864134255,2.99116911078713,0.657587197282725,0.556094498451196,1.0447564995665,1.64625709126355,0.796137067273973,0,0,0,0.621377317606506,0.703578179943289,0.540186184383045,1.65721314909647,0.787056926989615,1.54267112887378,0.232533944750408,1.3413670069981,1.16765342367169,0.822799249567402,0.164167464079095,1.21603214318784,0.730999937126662,1.3173006917463,0.939444931322602,11.7762371195911,10.0846520131699,0,0,1.06644125267617,0.464473343720877,1.15980715189884,1.21010114774006,0.667134131534611,1.33157938278791,0.474529061544512,0.494096864172033,1.25667604400135,0.397912944082302,1.9496408711912,0.898819408654221,0.648414149624083,1.39398891278057,1.51734320762465,0.342745537829186,0,0.610953983535943,0.581857461502877,1.33258057791605,0.0632365371242573,0.295220295959204,0,0.123397163921801,1.48226313543574,0,0.393117990226406,0,0.202860121388503,0.72353147925725,1.01850340712568,0.863088412352432,2.59416362840057,0.549122826376163,2.87536413054709,2.23284568601102,0.312037673114561,1.01031551178845,1.25578189465339,2.41221760681684,1.29327233116623,0.947457058852424,0.162964976442026,0,0.704070744865506,1.34005005953453,2.61848004974615,2.53673742215138,1.10344600874334,1.7717175171902,2.87018583583477,1.47476983244164,0.863424909329478,1.01254341007058,0,0,3.93411418415229,3.03530420935206,9.47248480927973,7.3843362553088,12.7869257393807,1.00988370881749,2.83957397474631,2.34263246577983,7.32439552291516,5.73525115086125,6.46116154838943,10.190755108398,3.23848561339915,4.9683495844923,3.95287777946523,9.63963949265421,1.98716119291576,1.06839362200353,1.14020871547503,0.659880491890142,0,0.485561272309963,0.302323556964751,0.188605079755898,0,1.84461088766356,1.55056975900933,0,0.356497378384721,1.26414703174326,0,0,8.17055053809091,3.24109969256358,1.29358683782755,1.71469628025274,2.30542303734956,3.21063871683727,2.46823530903181,3.34911444026059,0.23467170806371,3.60114520468494,1.10264199027481,2.63818004706368,2.26050197374268,1.74907482291652,0.954978752025092,0.820704498725306,0.291480836629851,11.8672193286726,1.53783792718067,0,0,0.565105371014073,0.410082683163076,0.457556346413045,0,0,0,0.954670618015114,1.26534397432454,2.43983360552218,1.18805874903981,1.25452977608681,1.31017538247707,1.48350781023303,1.32245529160537,1.04702376793612,1.42576470620972,0,0.56369293868419,2.39226473670366,3.30916980914195,9.33365704051429,5.94135187997563,6.75824501963113,9.15386461436881,2.604087696879,2.72634295506848,1.20792060413003,1.15212002503146,1.26404448251271,1.41907650703115,2.15693010046137,1.55904987573354,1.07416017400489,0.39736270956253,0.240390899039938,0.295379054349154,0.605798699688886,0.228620419965,0.403304740547362,1.16949456887703,0.577271049841977,0.818138315270983,0.906921534460845,0.221985953374065,0,0.167884616364078,7.53439416725543,0.750729901804728,0.36630324853453,0,2.00628841614145,22.5900737046827,18.8733346967943,20.6242384838183,12.7171354934329,9.59115527678899,20.3956352295219,12.8254275044043,12.6089936902782,11.7817026335893,9.31968561153276,0.62272408550506,7.58147259461959,2.90247129782028,3.16038732188782,0.838452650511929,2.38996560985018,3.33370091702423,3.5025959730612,4.81378814387723,2.779669329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| |||
|short_description=p2@Adam23 | |||
}} |
Revision as of 20:45, 5 August 2015
Short description: | p2@Adam23 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Adam23_5end |
Coexpression cluster: | MCL_coexpression_mm9:873 |
Association with transcript: | -125bp_to_ENSMUST00000114103_5end |
EntrezGene: | 23792 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.29e-13 | 39 |
electrically active cell | 1.29e-13 | 39 |
neuron | 1.39e-13 | 33 |
neuronal stem cell | 1.39e-13 | 33 |
neuroblast | 1.39e-13 | 33 |
electrically signaling cell | 1.39e-13 | 33 |
CNS neuron (sensu Vertebrata) | 3.12e-11 | 23 |
neuroblast (sensu Vertebrata) | 3.12e-11 | 23 |
ectodermal cell | 7.31e-10 | 44 |
neurectodermal cell | 7.31e-10 | 44 |
neural cell | 2.28e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 7.29e-26 | 95 |
ectoderm | 7.29e-26 | 95 |
presumptive ectoderm | 7.29e-26 | 95 |
central nervous system | 3.52e-25 | 73 |
nervous system | 1.83e-24 | 75 |
neurectoderm | 9.69e-23 | 64 |
neural plate | 9.69e-23 | 64 |
presumptive neural plate | 9.69e-23 | 64 |
ecto-epithelium | 2.73e-22 | 73 |
regional part of nervous system | 3.90e-21 | 54 |
neural tube | 6.58e-20 | 52 |
neural rod | 6.58e-20 | 52 |
future spinal cord | 6.58e-20 | 52 |
neural keel | 6.58e-20 | 52 |
pre-chordal neural plate | 6.92e-17 | 49 |
brain | 1.41e-16 | 47 |
future brain | 1.41e-16 | 47 |
regional part of brain | 4.99e-16 | 46 |
gray matter | 7.22e-16 | 34 |
structure with developmental contribution from neural crest | 6.64e-15 | 92 |
anterior neural tube | 7.56e-15 | 40 |
regional part of forebrain | 3.06e-14 | 39 |
forebrain | 3.06e-14 | 39 |
future forebrain | 3.06e-14 | 39 |
brain grey matter | 1.14e-12 | 29 |
regional part of telencephalon | 1.14e-12 | 29 |
telencephalon | 1.14e-12 | 29 |
cerebral cortex | 8.97e-09 | 21 |
cerebral hemisphere | 8.97e-09 | 21 |
pallium | 8.97e-09 | 21 |
regional part of cerebral cortex | 4.37e-08 | 17 |
occipital lobe | 8.89e-08 | 10 |
visual cortex | 8.89e-08 | 10 |
neocortex | 8.89e-08 | 10 |