FFCP PHASE1:Mm9::chrX:147091909..147091920,-: Difference between revisions
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{{FFCP|EntrezGene=56191|HGNC=|MCL_coexpression_id=1|UniProt=A2AFN3|association_with_transcript=0bp_to_ENSMUST00000148604,uc009uor.1_5end|description=CAGE_peak_2_at_Tro_5end|id=chrX:147091909..147091920,-|ontology_enrichment_celltype=CL:0000117!2.21e-12!23;CL:0000337!2.21e-12!23;CL:0000540!3.89e-12!33;CL:0000047!3.89e-12!33;CL:0000031!3.89e-12!33;CL:0000404!3.89e-12!33;CL:0000393!6.68e-10!39;CL:0000211!6.68e-10!39;CL:0002319!1.31e-08!43;CL:0000221!2.54e-08!44;CL:0000133!2.54e-08!44;CL:0000055!9.45e-07!50|ontology_enrichment_celltype_v019_2=CL:0000117,4.31e-13,23;CL:0000337,4.31e-13,23;CL:0000540,7.89e-13,33;CL:0000047,7.89e-13,33;CL:0000031,7.89e-13,33;CL:0000404,7.89e-13,33;CL:0000393,5.90e-10,39;CL:0000211,5.90e-10,39;CL:0002319,7.55e-08,43;CL:0000221,2.39e-07,44;CL:0000133,2.39e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!1.28e-26!73;UBERON:0005743!1.28e-26!73;UBERON:0002346!4.87e-26!71;UBERON:0003075!4.87e-26!71;UBERON:0007284!4.87e-26!71;UBERON:0000073!1.07e-25!75;UBERON:0001016!1.07e-25!75;UBERON:0001049!7.70e-24!52;UBERON:0005068!7.70e-24!52;UBERON:0006241!7.70e-24!52;UBERON:0007135!7.70e-24!52;UBERON:0004121!1.02e-22!102;UBERON:0000924!1.02e-22!102;UBERON:0006601!1.02e-22!102;UBERON:0000955!1.03e-22!50;UBERON:0006238!1.03e-22!50;UBERON:0002616!3.93e-22!49;UBERON:0000033!1.48e-21!63;UBERON:0003056!1.37e-19!49;UBERON:0003080!2.11e-18!40;UBERON:0002780!1.16e-17!39;UBERON:0001890!1.16e-17!39;UBERON:0006240!1.16e-17!39;UBERON:0002020!4.97e-16!34;UBERON:0002791!4.82e-13!29;UBERON:0003528!4.82e-13!29;UBERON:0001893!4.82e-13!29;UBERON:0000153!5.30e-11!94;UBERON:0007811!2.27e-09!86;UBERON:0000468!7.98e-09!333;UBERON:0000025!8.98e-09!114;UBERON:0000956!2.00e-08!21;UBERON:0001869!2.00e-08!21;UBERON:0000203!2.00e-08!21;UBERON:0002619!8.25e-08!17;UBERON:0004111!3.10e-07!122;UBERON:0002021!4.37e-07!10;UBERON:0000411!4.37e-07!10;UBERON:0001950!4.37e-07!10;UBERON:0000922!6.67e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.50e-27,73;UBERON:0002346,5.43e-26,64;UBERON:0003075,5.43e-26,64;UBERON:0007284,5.43e-26,64;UBERON:0000073,5.55e-26,54;UBERON:0001016,1.87e-25,75;UBERON:0001049,2.51e-24,52;UBERON:0005068,2.51e-24,52;UBERON:0006241,2.51e-24,52;UBERON:0007135,2.51e-24,52;UBERON:0010314,1.06e-22,92;UBERON:0000955,6.47e-21,47;UBERON:0006238,6.47e-21,47;UBERON:0004121,1.05e-20,95;UBERON:0000924,1.05e-20,95;UBERON:0006601,1.05e-20,95;UBERON:0002616,2.57e-20,46;UBERON:0010371,3.11e-20,73;UBERON:0003056,1.89e-19,49;UBERON:0003080,1.48e-18,40;UBERON:0002780,8.88e-18,39;UBERON:0001890,8.88e-18,39;UBERON:0006240,8.88e-18,39;UBERON:0002020,4.94e-16,34;UBERON:0003528,6.84e-13,29;UBERON:0002791,6.84e-13,29;UBERON:0001893,6.84e-13,29;UBERON:0000956,4.58e-08,21;UBERON:0001869,4.58e-08,21;UBERON:0000203,4.58e-08,21;UBERON:0002021,1.89e-07,10;UBERON:0000411,1.89e-07,10;UBERON:0001950,1.89e-07,10;UBERON:0002619,2.28e-07,17;UBERON:0000025,7.39e-07,114|phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,5.10259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.367093504323363,1.56478268869608,1.52617609466313,0.878744730937887,0.972149495371417,2.65974201088189,0,0,0,0,2.05807548828758,4.01146815914259,1.54701627683233,19.2200637816618,30.1524858185059,23.4517619297286,1.35537812827653,2.66788438833342,0,0,0,0.599200221036809,1.15265491596466,7.25827286159344,5.8052553482627,4.83747411108179,17.1390590642282,15.9025349485162,8.20688354740192,9.10531974673246,11.9498442259303,22.0231761998777,38.5615761017267,35.329502648936,27.8280067110709,30.1909223887952,22.3992749339407,23.451371916116,29.826418331679,33.4628162631214,32.9984015730508,34.4539467533829,24.6047268489397,0.530083353332288,0.982430281388212,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.68510327831436,0.258937883647172,2.52351636410202,10.9295755862666,5.78484408793068,4.84292544237723,5.27529241934179,7.99603208522793,1.38233250462643,1.23597483867187,0.722996784599558,0,2.75003644910596,0,0.484875253135222,0,18.737971008739,15.7085030110091,0.255457055208591,0,0,0,39.0953568846587,25.1625331550245,10.6806199295935,25.5521750682646,20.9686675010871,38.2330001989591,29.3656686152641,8.55450656342657,0.373220911830279,0,0.841767423545896,9.10843100738926,6.89706313300419,11.1638520479317,9.79581315932148,7.48401490664606,9.22418786050918,5.05989312622536,3.88055056108524,10.7783996466421,13.2374256117473,13.0203831881322,11.3981780862339,11.1218899690239,5.57203466435466,2.67516777330327,8.95654200683219,0,0,0,8.07790512888457,8.91199027928165,9.36322719597277,7.33908680314152,7.47704080640135,7.71335564436891,4.88321283975857,3.75582761959467,3.97002164048376,3.12663714835613,1.14917224855367,0.810688095458557,0.292399974850665,0.878200461164203,0.402619256281115,27.5479832619007,10.5991750750663,0,0,10.024547775156,6.50262681209228,6.05677068213839,3.831986967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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=entrezgene:56191 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=uniprot:A2AFN3 | |||
|association_with_transcript=0bp_to_ENSMUST00000148604,uc009uor.1_5end | |||
|cluster_id=chrX:147091909..147091920,- | |||
|description=CAGE_peak_2_at_Tro_5end | |||
|id=chrX:147091909..147091920,- | |||
|ontology_enrichment_celltype=CL:0000117!2.21e-12!23;CL:0000337!2.21e-12!23;CL:0000540!3.89e-12!33;CL:0000047!3.89e-12!33;CL:0000031!3.89e-12!33;CL:0000404!3.89e-12!33;CL:0000393!6.68e-10!39;CL:0000211!6.68e-10!39;CL:0002319!1.31e-08!43;CL:0000221!2.54e-08!44;CL:0000133!2.54e-08!44;CL:0000055!9.45e-07!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.31e-13,23;CL:0000337,4.31e-13,23;CL:0000540,7.89e-13,33;CL:0000047,7.89e-13,33;CL:0000031,7.89e-13,33;CL:0000404,7.89e-13,33;CL:0000393,5.90e-10,39;CL:0000211,5.90e-10,39;CL:0002319,7.55e-08,43;CL:0000221,2.39e-07,44;CL:0000133,2.39e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.28e-26!73;UBERON:0005743!1.28e-26!73;UBERON:0002346!4.87e-26!71;UBERON:0003075!4.87e-26!71;UBERON:0007284!4.87e-26!71;UBERON:0000073!1.07e-25!75;UBERON:0001016!1.07e-25!75;UBERON:0001049!7.70e-24!52;UBERON:0005068!7.70e-24!52;UBERON:0006241!7.70e-24!52;UBERON:0007135!7.70e-24!52;UBERON:0004121!1.02e-22!102;UBERON:0000924!1.02e-22!102;UBERON:0006601!1.02e-22!102;UBERON:0000955!1.03e-22!50;UBERON:0006238!1.03e-22!50;UBERON:0002616!3.93e-22!49;UBERON:0000033!1.48e-21!63;UBERON:0003056!1.37e-19!49;UBERON:0003080!2.11e-18!40;UBERON:0002780!1.16e-17!39;UBERON:0001890!1.16e-17!39;UBERON:0006240!1.16e-17!39;UBERON:0002020!4.97e-16!34;UBERON:0002791!4.82e-13!29;UBERON:0003528!4.82e-13!29;UBERON:0001893!4.82e-13!29;UBERON:0000153!5.30e-11!94;UBERON:0007811!2.27e-09!86;UBERON:0000468!7.98e-09!333;UBERON:0000025!8.98e-09!114;UBERON:0000956!2.00e-08!21;UBERON:0001869!2.00e-08!21;UBERON:0000203!2.00e-08!21;UBERON:0002619!8.25e-08!17;UBERON:0004111!3.10e-07!122;UBERON:0002021!4.37e-07!10;UBERON:0000411!4.37e-07!10;UBERON:0001950!4.37e-07!10;UBERON:0000922!6.67e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,3.50e-27,73;UBERON:0002346,5.43e-26,64;UBERON:0003075,5.43e-26,64;UBERON:0007284,5.43e-26,64;UBERON:0000073,5.55e-26,54;UBERON:0001016,1.87e-25,75;UBERON:0001049,2.51e-24,52;UBERON:0005068,2.51e-24,52;UBERON:0006241,2.51e-24,52;UBERON:0007135,2.51e-24,52;UBERON:0010314,1.06e-22,92;UBERON:0000955,6.47e-21,47;UBERON:0006238,6.47e-21,47;UBERON:0004121,1.05e-20,95;UBERON:0000924,1.05e-20,95;UBERON:0006601,1.05e-20,95;UBERON:0002616,2.57e-20,46;UBERON:0010371,3.11e-20,73;UBERON:0003056,1.89e-19,49;UBERON:0003080,1.48e-18,40;UBERON:0002780,8.88e-18,39;UBERON:0001890,8.88e-18,39;UBERON:0006240,8.88e-18,39;UBERON:0002020,4.94e-16,34;UBERON:0003528,6.84e-13,29;UBERON:0002791,6.84e-13,29;UBERON:0001893,6.84e-13,29;UBERON:0000956,4.58e-08,21;UBERON:0001869,4.58e-08,21;UBERON:0000203,4.58e-08,21;UBERON:0002021,1.89e-07,10;UBERON:0000411,1.89e-07,10;UBERON:0001950,1.89e-07,10;UBERON:0002619,2.28e-07,17;UBERON:0000025,7.39e-07,114 | |||
|phase1_expression=2.40223270657191,0,0,0,0,0,0.233612640595526,0.129123323441576,0,0,0,0,0,0,0,0,0,0,0,0,5.10259740906419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.304130793658544,0.367093504323363,1.56478268869608,1.52617609466313,0.878744730937887,0.972149495371417,2.65974201088189,0,0,0,0,2.05807548828758,4.01146815914259,1.54701627683233,19.2200637816618,30.1524858185059,23.4517619297286,1.35537812827653,2.66788438833342,0,0,0,0.599200221036809,1.15265491596466,7.25827286159344,5.8052553482627,4.83747411108179,17.1390590642282,15.9025349485162,8.20688354740192,9.10531974673246,11.9498442259303,22.0231761998777,38.5615761017267,35.329502648936,27.8280067110709,30.1909223887952,22.3992749339407,23.451371916116,29.826418331679,33.4628162631214,32.9984015730508,34.4539467533829,24.6047268489397,0.530083353332288,0.982430281388212,0,0,0,0.539703191637817,0,0,0.421333260395256,0,0,0,0.704217098883403,0,0,0,0,0,0,0.68510327831436,0.258937883647172,2.52351636410202,10.9295755862666,5.78484408793068,4.84292544237723,5.27529241934179,7.99603208522793,1.38233250462643,1.23597483867187,0.722996784599558,0,2.75003644910596,0,0.484875253135222,0,18.737971008739,15.7085030110091,0.255457055208591,0,0,0,39.0953568846587,25.1625331550245,10.6806199295935,25.5521750682646,20.9686675010871,38.2330001989591,29.3656686152641,8.55450656342657,0.373220911830279,0,0.841767423545896,9.10843100738926,6.89706313300419,11.1638520479317,9.79581315932148,7.48401490664606,9.22418786050918,5.05989312622536,3.88055056108524,10.7783996466421,13.2374256117473,13.0203831881322,11.3981780862339,11.1218899690239,5.57203466435466,2.67516777330327,8.95654200683219,0,0,0,8.07790512888457,8.91199027928165,9.36322719597277,7.33908680314152,7.47704080640135,7.71335564436891,4.88321283975857,3.75582761959467,3.97002164048376,3.12663714835613,1.14917224855367,0.810688095458557,0.292399974850665,0.878200461164203,0.402619256281115,27.5479832619007,10.5991750750663,0,0,10.024547775156,6.50262681209228,6.05677068213839,3.83198696784351,3.7804267453628,1.52180500890047,0.949058123089023,1.4822905925161,0.502670417600539,1.39269530428806,0.974820435595601,0,0.216138049874694,0.398282546508734,7.58671603812327,7.19765629441292,6.76246414038483,6.31319116320474,4.26695471768777,2.80543279561274,1.13825766823663,0.738050739898011,0.156998727841375,0.246794327843601,0,4.67166296005063,1.76903095601883,0.449724224769707,0.811440485554012,0.72353147925725,0,0.287696137450811,0.324270453550071,0.823684239564244,0,0.372140947668503,0,0.252578877947112,0,0,0.184753190166605,9.28507917675375,7.49638891633319,6.62005834523234,5.16318546234705,3.01511263395268,3.09456733151818,2.34160377429359,0.945810864637146,1.7717175171902,1.2756381492599,0.163863314715738,0,0.144649058581512,0,0,0,0.551873492609465,30.0229603277171,27.5447463491677,0,0,6.94118082715765,8.19921363022941,6.24727853425117,3.58453196928828,3.7875774594007,5.66153061577665,4.45291771842384,5.55286130031493,8.69633111482352,19.921921618152,1.84522110770749,9.08134578703002,7.00413925220377,0.989820737835213,1.32745138339963,3.15614827001476,3.32555912661226,2.45186603682668,2.65771703592696,3.07435147943927,3.10113951801865,1.45413491791002,2.13898427030833,0,1.05418608574999,0,16.6815406819356,13.5045820523483,9.83125996748934,7.28745919107414,13.1231772895282,13.1992925025532,14.3157647923845,8.22055362609418,3.28540391289194,9.74427525973573,0.441056796109924,0,1.93757312035087,1.44751019827574,0.358117032009409,0.164140899745061,0,20.025932617135,0.170870880797853,3.92135049130123,1.48155621895769,0,0,0.228778173206523,0,0.419854356970974,0.276399947608848,0,8.85740782027179,7.31950081656655,4.64422965533745,4.39085421630384,4.14888871117737,3.37160865962052,1.98368293740806,0.785267825952089,0.129614973291793,0,0,5.98066184175915,4.46737924234164,6.02798683866548,4.00395452780966,6.9272011451219,5.16371850041317,4.6873578543822,4.29923312145414,1.20792060413003,0.288030006257865,0,5.27085559754427,2.56777392912068,1.03936658382236,1.61124026100733,0.39736270956253,0.600977247599844,0.295379054349154,0.100966449948148,0.0762068066549998,0,0,0,0,0.226730383615211,0,0,0,0.579568782096571,1.12609485270709,2.56412273974171,0.643105137237198,0,25.413832917768,29.0004898999521,23.4887160510153,21.8253541576483,17.1270629942661,24.9279986138601,22.9507650078814,26.1186297870048,24.9228324941313,23.2992140288319,9.23707393499172,12.768795948833,9.90254913373978,8.99494853152688,8.59413966774727,7.16989682955055,6.66740183404846,8.24140228955577,8.02298023979538,9.6024940470243,6.84394109703647,6.79054828989874,5.52484894072306,6.97874161213075,7.63891737109657,7.62069906052918,6.02598494913249,5.59436739344745,5.76920261124629,8.39033844766065,7.88599280486455,8.34136288948886,7.62995807831427,7.55801366488108,7.9992973353031,7.44608549446753,6.76833499629258,8.15516105457313,6.51859746460137,8.97827634652382,6.05038592433288,6.30428687203606,7.7753898202241,7.2820315357404,8.2949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| |||
|short_description=p2@Tro | |||
}} |
Revision as of 02:07, 6 August 2015
Short description: | p2@Tro |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Tro_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000148604, uc009uor.1_5end |
EntrezGene: | 56191 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.31e-13 | 23 |
neuroblast (sensu Vertebrata) | 4.31e-13 | 23 |
neuron | 7.89e-13 | 33 |
neuronal stem cell | 7.89e-13 | 33 |
neuroblast | 7.89e-13 | 33 |
electrically signaling cell | 7.89e-13 | 33 |
electrically responsive cell | 5.90e-10 | 39 |
electrically active cell | 5.90e-10 | 39 |
neural cell | 7.55e-08 | 43 |
ectodermal cell | 2.39e-07 | 44 |
neurectodermal cell | 2.39e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 3.50e-27 | 73 |
neurectoderm | 5.43e-26 | 64 |
neural plate | 5.43e-26 | 64 |
presumptive neural plate | 5.43e-26 | 64 |
regional part of nervous system | 5.55e-26 | 54 |
nervous system | 1.87e-25 | 75 |
neural tube | 2.51e-24 | 52 |
neural rod | 2.51e-24 | 52 |
future spinal cord | 2.51e-24 | 52 |
neural keel | 2.51e-24 | 52 |
structure with developmental contribution from neural crest | 1.06e-22 | 92 |
brain | 6.47e-21 | 47 |
future brain | 6.47e-21 | 47 |
ectoderm-derived structure | 1.05e-20 | 95 |
ectoderm | 1.05e-20 | 95 |
presumptive ectoderm | 1.05e-20 | 95 |
regional part of brain | 2.57e-20 | 46 |
ecto-epithelium | 3.11e-20 | 73 |
pre-chordal neural plate | 1.89e-19 | 49 |
anterior neural tube | 1.48e-18 | 40 |
regional part of forebrain | 8.88e-18 | 39 |
forebrain | 8.88e-18 | 39 |
future forebrain | 8.88e-18 | 39 |
gray matter | 4.94e-16 | 34 |
brain grey matter | 6.84e-13 | 29 |
regional part of telencephalon | 6.84e-13 | 29 |
telencephalon | 6.84e-13 | 29 |
cerebral cortex | 4.58e-08 | 21 |
cerebral hemisphere | 4.58e-08 | 21 |
pallium | 4.58e-08 | 21 |
occipital lobe | 1.89e-07 | 10 |
visual cortex | 1.89e-07 | 10 |
neocortex | 1.89e-07 | 10 |
regional part of cerebral cortex | 2.28e-07 | 17 |
tube | 7.39e-07 | 114 |