FFCP PHASE1:Hg19::chr6:146285455..146285528,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:146285455..146285528,- to FFCP PHASE1:Hg19::chr6:146285455..146285528,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=257218 | |EntrezGene=257218 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19336 | |HGNC=19336 | ||
|TSSclassifier=strong | |||
|UniProt=Q149N8 | |UniProt=Q149N8 | ||
|association_with_transcript=0bp_to_ENST00000367505_5end | |||
|cluster_id=chr6:146285455..146285528,- | |||
|description=CAGE_peak_1_at_SHPRH_5end | |||
|id=chr6:146285455..146285528,- | |||
|ontology_enrichment_celltype=CL:0000838!8.44e-08!52;CL:0000542!1.68e-07!53;CL:0000051!1.68e-07!53 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000838,8.44e-08,52;CL:0000542,1.68e-07,53;CL:0000051,1.68e-07,53 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:8692!2.68e-08!31;DOID:1240!9.93e-08!39;DOID:2531!2.19e-07!51;DOID:0060083!2.19e-07!51 | |||
|ontology_enrichment_disease_v019=DOID:8692;5.08e-08;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,2.68e-08,31;DOID:1240,9.93e-08,39;DOID:2531,2.19e-07,51;DOID:0060083,2.19e-07,51 | |||
|ontology_enrichment_uberon=UBERON:0007023!3.38e-20!115;UBERON:0001049!3.04e-12!57;UBERON:0005068!3.04e-12!57;UBERON:0006241!3.04e-12!57;UBERON:0007135!3.04e-12!57;UBERON:0003080!1.01e-11!42;UBERON:0002780!2.31e-11!41;UBERON:0001890!2.31e-11!41;UBERON:0006240!2.31e-11!41;UBERON:0002616!2.78e-10!59;UBERON:0000073!4.83e-10!94;UBERON:0001016!4.83e-10!94;UBERON:0000955!9.99e-10!69;UBERON:0006238!9.99e-10!69;UBERON:0002346!1.06e-09!90;UBERON:0001017!1.83e-09!82;UBERON:0002020!3.00e-09!34;UBERON:0003528!3.00e-09!34;UBERON:0003075!3.49e-09!86;UBERON:0007284!3.49e-09!86;UBERON:0001869!7.12e-09!32;UBERON:0005743!1.32e-08!86;UBERON:0001893!1.38e-08!34;UBERON:0002791!1.76e-08!33;UBERON:0000153!3.70e-07!129;UBERON:0007811!3.70e-07!129;UBERON:0003056!3.79e-07!61;UBERON:0002619!5.06e-07!22;UBERON:0000956!8.83e-07!25;UBERON:0000203!8.83e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.88e-08;41!UBERON:0001890;1.88e-08;41!UBERON:0002791;2.54e-08;32!UBERON:0001869;3.07e-08;32!UBERON:0003528;3.97e-08;34!UBERON:0002020;3.97e-08;34!UBERON:0000073;1.94e-07;53!UBERON:0002616;1.94e-07;53!UBERON:0001893;2.10e-07;34!UBERON:0002619;4.94e-07;22!UBERON:0000956;7.16e-07;25!UBERON:0000203;7.16e-07;25!UBERON:0007023;9.31e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,8.34e-20,114;UBERON:0001049,6.78e-12,56;UBERON:0005068,6.78e-12,56;UBERON:0006241,6.78e-12,56;UBERON:0007135,6.78e-12,56;UBERON:0000073,1.93e-11,53;UBERON:0002616,1.93e-11,53;UBERON:0002780,2.31e-11,41;UBERON:0001890,2.31e-11,41;UBERON:0003080,2.31e-11,41;UBERON:0006240,2.31e-11,41;UBERON:0001016,1.22e-10,89;UBERON:0000955,2.03e-09,68;UBERON:0006238,2.03e-09,68;UBERON:0003528,3.00e-09,34;UBERON:0002020,3.00e-09,34;UBERON:0001017,3.60e-09,81;UBERON:0002791,6.47e-09,32;UBERON:0002346,6.51e-09,86;UBERON:0001869,7.12e-09,32;UBERON:0001893,1.38e-08,34;UBERON:0003075,2.10e-08,82;UBERON:0007284,2.10e-08,82;UBERON:0003056,4.15e-07,61;UBERON:0002619,5.06e-07,22;UBERON:0000956,8.83e-07,25;UBERON:0000203,8.83e-07,25 | |||
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| ||
|short_description=p1@SHPRH | |||
}} | }} |
Latest revision as of 22:45, 15 September 2015
Short description: | p1@SHPRH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHPRH_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000367505_5end |
EntrezGene: | SHPRH |
HGNC: | 19336 |
UniProt: | Q149N8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphoid lineage restricted progenitor cell | 8.44e-08 | 52 |
lymphocyte | 1.68e-07 | 53 |
common lymphoid progenitor | 1.68e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
adult organism | 8.34e-20 | 114 |
neural tube | 6.78e-12 | 56 |
neural rod | 6.78e-12 | 56 |
future spinal cord | 6.78e-12 | 56 |
neural keel | 6.78e-12 | 56 |
regional part of nervous system | 1.93e-11 | 53 |
regional part of brain | 1.93e-11 | 53 |
regional part of forebrain | 2.31e-11 | 41 |
forebrain | 2.31e-11 | 41 |
anterior neural tube | 2.31e-11 | 41 |
future forebrain | 2.31e-11 | 41 |
nervous system | 1.22e-10 | 89 |
brain | 2.03e-09 | 68 |
future brain | 2.03e-09 | 68 |
brain grey matter | 3.00e-09 | 34 |
gray matter | 3.00e-09 | 34 |
central nervous system | 3.60e-09 | 81 |
regional part of telencephalon | 6.47e-09 | 32 |
neurectoderm | 6.51e-09 | 86 |
cerebral hemisphere | 7.12e-09 | 32 |
telencephalon | 1.38e-08 | 34 |
neural plate | 2.10e-08 | 82 |
presumptive neural plate | 2.10e-08 | 82 |
pre-chordal neural plate | 4.15e-07 | 61 |
regional part of cerebral cortex | 5.06e-07 | 22 |
cerebral cortex | 8.83e-07 | 25 |
pallium | 8.83e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 2.68e-08 | 31 |
leukemia | 9.93e-08 | 39 |
hematologic cancer | 2.19e-07 | 51 |
immune system cancer | 2.19e-07 | 51 |