FFCP PHASE1:Hg19::chr17:48264045..48264073,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1277 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2197 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=100bp_to_ENST00000510710_5end | |||
|cluster_id=chr17:48264045..48264073,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_6_at_COL1A1_5end | |||
|id=chr17:48264045..48264073,- | |||
|ontology_enrichment_celltype=CL:0000055!7.88e-40!180;CL:0000057!1.73e-24!75;CL:0000183!7.01e-16!59;CL:0000680!1.59e-15!57;CL:0000056!1.59e-15!57;CL:0000355!1.59e-15!57;CL:0000187!6.34e-15!54;CL:0000393!7.11e-13!60;CL:0000211!7.11e-13!60;CL:0000192!2.71e-12!42;CL:0000514!2.71e-12!42;CL:0000048!1.30e-09!430;CL:0000499!3.12e-09!27;CL:0000723!5.93e-09!436;CL:0000034!1.45e-08!444;CL:0000359!1.66e-08!32;CL:0000144!1.84e-08!625;CL:0002371!2.04e-08!591;CL:0002334!2.16e-08!12;CL:0002620!2.94e-08!23;CL:0000222!2.38e-07!119;CL:0000327!7.27e-07!14 | |||
|ontology_enrichment_celltype_v019=CL:0000134;1.06e-11;55!CL:0000057;5.93e-11;73!CL:0002320;3.32e-10;188!CL:0000723;3.83e-10;61!CL:0000048;7.43e-10;58!CL:0002620;1.95e-09;23!CL:0002334;1.96e-09;12!CL:0000192;2.72e-09;43!CL:0000187;3.52e-09;55!CL:0000499;2.49e-08;28!CL:0000359;3.20e-08;32!CL:0000034;6.50e-08;69!CL:0000327;2.82e-07;15!CL:0002570;5.51e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.24e-29,76;CL:0000680,7.29e-17,58;CL:0000056,7.29e-17,58;CL:0000355,7.29e-17,58;CL:0000187,3.61e-16,55;CL:0000048,2.66e-15,427;CL:0000723,2.95e-14,433;CL:0000034,1.68e-13,441;CL:0000192,5.31e-13,43;CL:0000514,5.31e-13,43;CL:0000393,7.04e-13,61;CL:0000211,7.04e-13,61;CL:0002334,2.01e-09,12;CL:0002620,2.07e-09,23;CL:0000359,1.91e-08,32;CL:0000499,2.51e-08,28;CL:0000222,6.05e-08,121;CL:0002320,8.16e-08,361;CL:0000327,2.94e-07,15;CL:0002570,5.57e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000514;2.72e-09;43!CL:0000355;3.68e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:2394;7.31e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,7.41e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000914!3.63e-18!83;UBERON:0002329!3.63e-18!83;UBERON:0003077!3.63e-18!83;UBERON:0003059!3.63e-18!83;UBERON:0007282!3.63e-18!83;UBERON:0009618!3.63e-18!83;UBERON:0007285!3.63e-18!83;UBERON:0004290!2.71e-16!70;UBERON:0002385!9.09e-16!63;UBERON:0001015!9.09e-16!63;UBERON:0000383!9.09e-16!63;UBERON:0001134!1.07e-15!61;UBERON:0002036!1.07e-15!61;UBERON:0003082!1.07e-15!61;UBERON:0005256!3.23e-15!143;UBERON:0000486!2.89e-13!82;UBERON:0002100!1.91e-10!216;UBERON:0000475!2.25e-09!365;UBERON:0003102!2.85e-08!95;UBERON:0001013!6.32e-08!14;UBERON:0003104!1.12e-07!238;UBERON:0009142!1.12e-07!238;UBERON:0000490!1.52e-07!138;UBERON:0002199!2.13e-07!45;UBERON:0002416!2.13e-07!45;UBERON:0004872!2.23e-07!84 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;1.85e-10;198!UBERON:0001013;6.44e-09;14!UBERON:0002385;8.20e-08;31!UBERON:0001015;8.20e-08;31!UBERON:0000383;8.20e-08;31!UBERON:0002204;1.70e-07;70 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007524,1.06e-17,73;UBERON:0002329,1.19e-17,71;UBERON:0003059,1.19e-17,71;UBERON:0007282,1.19e-17,71;UBERON:0004290,1.19e-17,71;UBERON:0009618,1.19e-17,71;UBERON:0007503,1.28e-17,78;UBERON:0003077,4.17e-17,72;UBERON:0007285,4.17e-17,72;UBERON:0001134,8.59e-17,62;UBERON:0002036,8.59e-17,62;UBERON:0003082,8.59e-17,62;UBERON:0002385,2.06e-16,64;UBERON:0001015,2.06e-16,64;UBERON:0000383,2.06e-16,64;UBERON:0000486,5.99e-14,83;UBERON:0003104,7.17e-14,160;UBERON:0009142,7.17e-14,160;UBERON:0005256,2.15e-13,122;UBERON:0001013,6.89e-09,14;UBERON:0002199,8.98e-09,46;UBERON:0002416,8.98e-09,46;UBERON:0002384,2.38e-08,371;UBERON:0000926,3.43e-08,315;UBERON:0004120,3.43e-08,315;UBERON:0006603,3.43e-08,315;UBERON:0004872,1.69e-07,83;UBERON:0003102,1.99e-07,99;UBERON:0002100,2.21e-07,199;UBERON:0000490,2.22e-07,148;UBERON:0002097,7.77e-07,41 | |||
|phase1_expression=27.0700785113129,58.4494430222384,46.3739989475745,36.0263874071269,47.8248371037198,27.0424942471114,144.380930555937,3.15859936713415,4.96252693579693,0.982935746006035,1.39560233594486,3.49506195408276,27.1679987575307,11.7578035312044,10.2733186475654,10.7572023432284,12.0538905604795,16.0668219885222,15.1259167625057,11.3271373430645,16.932057373273,22.8821946679004,2.0036519099174,1.77936752594749,3.38965126905968,0.152826811495903,0.164201178899891,0.157421562627358,0,0,0.464448369948228,0,0.30120591877825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.8522395463673,19.8186970857472,23.4935449049968,24.0642197105227,69.6711756201562,59.6464460288324,36.4976152726977,2.3633704291017,12.8603050528287,9.48615685485761,0.851363990735132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0.81014194788176,0,0,0,0,0,0.366403487860815,0,0,0,65.600297623782,31.024475357822,10.1955069226178,123.626583542739,30.8561492512571,18.5023608046961,17.0798393167528,147.013858856627,3.11211035399766,7.13966561969347,3.75962377160955,26.1848349825731,22.47086105472,2.57753575017176,2.18512053781224,0,6.12739590262384,2.3486899728753,1.45685649931318,1.82586048712923,2.85815839756851,6.26455018290017,5.3729406211398,76.0321828660514,119.429926841543,21.8438726865126,61.0825420543803,1.68336113954066,5.12985931475053,1.93944880838928,19.7539929396377,56.3937544270196,34.4045154896107,12.8178366970824,40.7214473013717,55.0978063151904,39.6312655168381,44.7135733165759,22.774608961695,48.1787809885327,32.3843330016966,32.2362794580819,29.425975558682,32.3115231032467,27.5229196940475,29.4195823410238,37.9860263992777,11.9894996890892,10.5127567232502,0,0.545492241181669,0,0.121973706129595,0,1.62671520017326,1.34759371519982,0.756962552626885,0,1.56449532329816,52.7457569318166,2.76269842704961,19.5034529773431,15.8813485967309,0,0.337169380156203,0,0,0,0.237270619111097,0.269662616320329,0.392442930250692,0,0,21.0362660705169,47.331011303111,60.2735716680722,0,0,0.590789906681404,0,0,8.92152613552333,0.109750285408626,0,0,0.0925884451585296,1.3032332212413,2.07986957055916,5.77325368101093,2.31860809950154,10.5667824812239,0.721832238805369,0,0,0,0,0,0,0,0,4.70349958956807,0.567100388969546,0,0,0,0,0,0.621984346622316,0.144119953416961,0,0.317489471460845,0,0,6.84289784090821,1.95372236136315,0,0,6.16720963899484,14.3866822714982,12.6141851612034,20.94201795276,96.5672403800083,48.182256895692,30.5828834072601,17.6812642749322,10.5455023447478,9.92943924162948,11.4561536976923,84.7859502392815,152.476671114995,29.6366521241077,19.8699072419178,39.8038982591651,23.7585561880029,3.91871190177462,1.74306691720059,2.29937879718731,0,0,0,51.2797190751987,64.3226840671038,2.85273810081437,7.81819056004928,9.65738715986802,2.68591444859843,0,0,0,0,0.76228387266739,0,0,0.502548796003046,0,0,0,0,18.5264152495901,26.5090376161629,6.23909554509392,153.066554086674,283.345234209893,114.649655729671,35.8452729877702,12.0378439891088,27.2889004867182,24.8335371102012,25.904798342882,13.2745801350026,15.2915161463826,33.6777990835914,57.6480952002238,0,0,0,3.94065842880137,46.6019230629392,48.6848372260785,61.0345207234191,32.9943242569334,146.785229388497,69.4514188965899,36.3312146837359,97.4774762130261,35.6203359467978,35.3140198808081,56.6421903748875,10.5122759697676,33.2322834677517,23.5907068273717,0.120859449591622,1.00253235151642,0.184161977871793,25.0295496998843,38.9675099534374,38.4194535831113,0,0.231046011313244,3.13739907670742,0,1.16106791782163,0,0,4.31831832204279,3.08454505380579,8.12839312631558,11.5388647986616,0,0,1.11937377361089,0,0,0,0.328014645699706,1.30151357865721,1.13345112812495,9.98107166519943,3.54790849658528,1.72279661398852,0.650060246036521,57.8462147438974,12.9538762511443,3.23502095940753,5.37262861541453,3.99726060205139,14.6091533020852,20.7373872297347,5.62495740946266,80.1288320820636,1.4875642382488,2.11409074101617,0.382838137483752,1.0115778085555,21.8477408169724,116.480568327337,3.485186350803,15.7097125889805,1.06461206063404,0.869932992075073,5.00375391580584,1.14499909393593,4.09374206295634,9.17500331684305,28.5945290885737,18.9364365570387,10.2705357128141,5.09125196681499,5.49464048139461,12.591072030832,33.2189805980626,14.8443626955565,1.01091240786658,4.75530963519025,4.21258456238981,25.8445881717483,21.6905005771843,2.11300293513511,16.7894891031822,64.6222824028467,16.9512174930364,6.61638412255349,12.6053405295832,0.876901770507525,23.1510213706675,26.8916848339119,3.44947640836597,4.64735247149625,4.7888252430481,11.4729081763241,23.8745169661884,5.35006577221875,2.83808851256478,37.7882667182819,44.1255156566269,4.55367808518858,13.6474540895543,0,1.34060455107157,0,0.470719003883896,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0.320472213382419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0,0.852408440419239,0.71623345421307,0,0.307160702099232,0,0,0,0,0,3.18796781201712,0.828851746593443,0,0.102268682502155,0,45.1007402109621,0,0,0,1.57829449019094,0,4.44547960578548,0,0.0927680981618513,0,0,0.0874599999961957,0,0,0,0,0,0,1.73624994933292,0,0.120596438625408,0,0,0,0,0.10893846351899,0,13.3893449796607,0.683652335082007,0,0.179515288819544,0.217294743844016,1.5950057986596,11.4496991752328,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,0.442287822516696,4.27721101453538,0,0,0,0.067401132980677,60.1933235474092,0,0,0,0,0.789168805698781,16.9387002468129,0.30607276163049,2.40109002588254,0,0,0,0,0,0,0,0.554698692052555,0.173559738335131,0,0,4.36816670605075,0,0.870806981601766,0.146178634172371,0.328461828212837,0.484945082442097,0.353024506766001,34.801034080202,0,0,0,0.195551382734803,1.28254112402454,2.34798294213288,0,0,0,0,0.14405479798815,0,0,0,0.104602846312333,0,3.17845648891671,0,0,0,18.4799139810582,0,5.30636562417283,1.83328339209347,0,0.599037001496973,0,0,8.33075058835406,52.9640828807333,0,0,0,0,0,0,0,0,0,0.687697182986169,0.415440338029185,0,0,0.0607495566580247,0,0.315222829196793,3.88163952198986,0.528001682597033,0,0,0,0,3.30549098951175,4.3439968140297,8.64221491201268,14.6964312049234,4.7892076624995,0,11.5863854814087,0,0.293104467356165,2.65013777824443,0,0,0,0,0.427149650270779,6.75978511928564,2.89967338743037,1.48849806543585,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,38.9555035534741,67.3094332360006,33.2883516901568,14.5840314061819,16.60348151567,20.4656580967203,8.46708253068617,36.9003453982303,36.838616538119,8.7234538493884,12.1065543044414,14.843502701399,18.6315548251511,29.0294345488599,33.4960560343074,28.6959783996454,83.6934882114507,31.9876378221788,9.76489759691188,17.2756226242431,28.4637976162594,3.24823631914946,42.5962600907519,6.80047199927361,50.4791686618706,33.0014498990601,3.78554694685953,0,2.14441591374926,0,7.70800146741726,4.16740453782901,4.16052397660995,4.47722102703719,0.308801447160972,6.35923743778251,1.06013487567529,1.54331230616732,0.168942440653073,0,0,1.51929978088691,0,0,0,0,13.7596136515493,0,0.211312123358627,0,0,0,1.13503190713367,3.12980115428129,0,1.86623178009892,0,0,0,0,0,0,0.371807292777007,0,20.3522784418188,0,0,42.6737891865728,38.8931756238564,0.0642292250964595,0,0,0,0,0,0,0,0,0,0,0,66.7418667067543,0,9.15014621734864,2.78278214892252,28.4404146871963,0,0,0,0.295712172434091,0,0,0,0.0634158101939068,0,1.64477330057155,4.46590060550365,0,0,0,0,0,0,2.7497734750418,0,0.342976018874837,0.0679697329768317,0,0,0,0.78493092850514,0.314231179832004,0,5.47895232305697,0,0,0.643288897589907,0,0,0.695433089210318,28.8616091302891,0,0.17071847709395,0.691259661814092,0.430227358820278,0,0.0852134047591577,0.423387050190929,0.22910686854405,0.31020638566432,4.77769469488717,0.335566295393377,0,0.121917924982269,0,0.205325613712494,22.0364741954258,33.9997695141398,0,0,0,0,0,0,0.385870790539723,8.74238242015829,0,4.16752146981639,0,0,0,17.7515405585028,44.3509769335202,0.469919589899268,2.06265241515447,0,0,0,0,6.57302749421866,0,0,0.157771562193185,0,0,14.2837246939158,246.260702026389,101.216462670281,236.646729481713,0.126166424835079,0.109265571963696,0.380095503034311,0.101988829741982,0,0.0918948995348449,0.250707539292375,1.51557396436479,0.535928260312357,0,0,2.77204176471275,11.4270927102595,0.387533459016037,1.30356900021302,1.6819779387092,0.0636471582781649,9.90374225895274,0.653150243690884,8.89806582821731,0.134704106029175,0.717222053926764,37.2579599331535,0,0,11.5843369372164,0,114.974061777693,3.91172621385173,21.1586012724184,0.665756774185513,1.00636896795513,0 | |||
|short_description=p6@COL1A1 | |||
}} |
Latest revision as of 23:55, 15 September 2015
Short description: | p6@COL1A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_COL1A1_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 100bp_to_ENST00000510710_5end |
EntrezGene: | COL1A1 |
HGNC: | 2197 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.24e-29 | 76 |
muscle precursor cell | 7.29e-17 | 58 |
myoblast | 7.29e-17 | 58 |
multi-potent skeletal muscle stem cell | 7.29e-17 | 58 |
muscle cell | 3.61e-16 | 55 |
multi fate stem cell | 2.66e-15 | 427 |
somatic stem cell | 2.95e-14 | 433 |
stem cell | 1.68e-13 | 441 |
smooth muscle cell | 5.31e-13 | 43 |
smooth muscle myoblast | 5.31e-13 | 43 |
electrically responsive cell | 7.04e-13 | 61 |
electrically active cell | 7.04e-13 | 61 |
preadipocyte | 2.01e-09 | 12 |
skin fibroblast | 2.07e-09 | 23 |
vascular associated smooth muscle cell | 1.91e-08 | 32 |
stromal cell | 2.51e-08 | 28 |
mesodermal cell | 6.05e-08 | 121 |
connective tissue cell | 8.16e-08 | 361 |
extracellular matrix secreting cell | 2.94e-07 | 15 |
mesenchymal stem cell of adipose | 5.57e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
dense mesenchyme tissue | 1.06e-17 | 73 |
somite | 1.19e-17 | 71 |
presomitic mesoderm | 1.19e-17 | 71 |
presumptive segmental plate | 1.19e-17 | 71 |
dermomyotome | 1.19e-17 | 71 |
trunk paraxial mesoderm | 1.19e-17 | 71 |
epithelial vesicle | 1.28e-17 | 78 |
paraxial mesoderm | 4.17e-17 | 72 |
presumptive paraxial mesoderm | 4.17e-17 | 72 |
skeletal muscle tissue | 8.59e-17 | 62 |
striated muscle tissue | 8.59e-17 | 62 |
myotome | 8.59e-17 | 62 |
muscle tissue | 2.06e-16 | 64 |
musculature | 2.06e-16 | 64 |
musculature of body | 2.06e-16 | 64 |
multilaminar epithelium | 5.99e-14 | 83 |
mesenchyme | 7.17e-14 | 160 |
entire embryonic mesenchyme | 7.17e-14 | 160 |
trunk mesenchyme | 2.15e-13 | 122 |
adipose tissue | 6.89e-09 | 14 |
integument | 8.98e-09 | 46 |
integumental system | 8.98e-09 | 46 |
connective tissue | 2.38e-08 | 371 |
mesoderm | 3.43e-08 | 315 |
mesoderm-derived structure | 3.43e-08 | 315 |
presumptive mesoderm | 3.43e-08 | 315 |
splanchnic layer of lateral plate mesoderm | 1.69e-07 | 83 |
surface structure | 1.99e-07 | 99 |
trunk | 2.21e-07 | 199 |
unilaminar epithelium | 2.22e-07 | 148 |
skin of body | 7.77e-07 | 41 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 7.41e-07 | 14 |