FFCP PHASE1:Hg19::chr2:102091566..102091581,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=731220 | |EntrezGene=731220 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=37253 | |HGNC=37253 | ||
|TSSclassifier=strong | |||
|UniProt=Q6ZV50,E9PDA6 | |UniProt=Q6ZV50,E9PDA6 | ||
|association_with_transcript=-401bp_to_ENST00000428343,ENST00000481179,NM_001145664,uc002tbb.1,uc010yvx.1_5end | |association_with_transcript=-401bp_to_ENST00000428343,ENST00000481179,NM_001145664,uc002tbb.1,uc010yvx.1_5end | ||
|cluster_id=chr2:102091566..102091581,- | |||
|coexpression_cluster_id=C4110 | |coexpression_cluster_id=C4110 | ||
|description=CAGE_peak_1_at_RFX8_5end | |description=CAGE_peak_1_at_RFX8_5end | ||
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|ontology_enrichment_celltype=CL:0000048!1.78e-36!430;CL:0000723!1.17e-34!436;CL:0000034!8.61e-34!444;CL:0000134!7.17e-26!358;CL:0002320!8.28e-25!365;CL:0000055!9.75e-25!180;CL:0000219!3.10e-23!390;CL:0000057!1.89e-18!75;CL:0002371!7.15e-17!591;CL:0002620!4.50e-14!23;CL:0000144!1.48e-12!625;CL:0002057!1.64e-09!42;CL:0000680!3.59e-09!57;CL:0000056!3.59e-09!57;CL:0000355!3.59e-09!57;CL:0000187!3.42e-08!54;CL:0000860!4.43e-08!45;CL:0000003!9.27e-08!722;CL:0000012!2.01e-07!682;CL:0000548!4.65e-07!679;CL:0000004!4.65e-07!679;CL:0000255!4.65e-07!679;CL:0000183!6.61e-07!59;CL:0000763!9.39e-07!112;CL:0000049!9.39e-07!112 | |ontology_enrichment_celltype=CL:0000048!1.78e-36!430;CL:0000723!1.17e-34!436;CL:0000034!8.61e-34!444;CL:0000134!7.17e-26!358;CL:0002320!8.28e-25!365;CL:0000055!9.75e-25!180;CL:0000219!3.10e-23!390;CL:0000057!1.89e-18!75;CL:0002371!7.15e-17!591;CL:0002620!4.50e-14!23;CL:0000144!1.48e-12!625;CL:0002057!1.64e-09!42;CL:0000680!3.59e-09!57;CL:0000056!3.59e-09!57;CL:0000355!3.59e-09!57;CL:0000187!3.42e-08!54;CL:0000860!4.43e-08!45;CL:0000003!9.27e-08!722;CL:0000012!2.01e-07!682;CL:0000548!4.65e-07!679;CL:0000004!4.65e-07!679;CL:0000255!4.65e-07!679;CL:0000183!6.61e-07!59;CL:0000763!9.39e-07!112;CL:0000049!9.39e-07!112 | ||
|ontology_enrichment_celltype_v019=CL:0002620;4.89e-18;23!CL:0000860;3.94e-11;33!CL:0002057;3.94e-11;33!CL:0000057;8.45e-09;73!CL:0002551;3.11e-08;6!CL:0002539;7.96e-08;10!CL:0000576;3.21e-07;48!CL:0000473;3.38e-07;39!CL:0000234;3.38e-07;39 | |ontology_enrichment_celltype_v019=CL:0002620;4.89e-18;23!CL:0000860;3.94e-11;33!CL:0002057;3.94e-11;33!CL:0000057;8.45e-09;73!CL:0002551;3.11e-08;6!CL:0002539;7.96e-08;10!CL:0000576;3.21e-07;48!CL:0000473;3.38e-07;39!CL:0000234;3.38e-07;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000048,2.06e-36,427;CL:0000723,3.68e-35,433;CL:0000034,4.93e-35,441;CL:0000134,6.66e-28,354;CL:0002320,1.74e-26,361;CL:0000219,5.36e-25,386;CL:0000057,2.24e-20,76;CL:0002620,2.25e-18,23;CL:0000860,8.26e-11,42;CL:0002057,8.26e-11,42;CL:0000763,2.09e-09,108;CL:0000049,2.09e-09,108;CL:0002009,7.03e-09,61;CL:0000473,1.88e-08,48;CL:0000234,1.88e-08,48;CL:0002551,2.94e-08,6;CL:0000557,4.22e-08,67;CL:0002194,5.81e-08,59;CL:0000576,5.81e-08,59;CL:0000040,5.81e-08,59;CL:0000559,5.81e-08,59;CL:0002539,8.10e-08,10;CL:0000839,2.58e-07,66;CL:0000680,4.04e-07,58;CL:0000056,4.04e-07,58;CL:0000355,4.04e-07,58 | |||
|ontology_enrichment_development_v019=CL:0002057;2.03e-08;42 | |ontology_enrichment_development_v019=CL:0002057;2.03e-08;42 | ||
|ontology_enrichment_disease=DOID:2394!5.20e-07!14 | |ontology_enrichment_disease=DOID:2394!5.20e-07!14 | ||
|ontology_enrichment_disease_v019=DOID:2394;1.56e-08;14 | |ontology_enrichment_disease_v019=DOID:2394;1.56e-08;14 | ||
|ontology_enrichment_disease_v019_2=DOID:2394,1.63e-08,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!6.25e-24!375;UBERON:0002204!1.61e-15!167;UBERON:0000914!1.42e-12!83;UBERON:0002329!1.42e-12!83;UBERON:0003077!1.42e-12!83;UBERON:0003059!1.42e-12!83;UBERON:0007282!1.42e-12!83;UBERON:0009618!1.42e-12!83;UBERON:0007285!1.42e-12!83;UBERON:0004290!5.99e-12!70;UBERON:0002199!1.68e-10!45;UBERON:0002416!1.68e-10!45;UBERON:0002097!3.26e-10!40;UBERON:0000486!2.20e-09!82;UBERON:0004765!6.97e-08!101;UBERON:0001434!6.97e-08!101;UBERON:0002067!1.07e-07!9;UBERON:0004016!1.07e-07!9;UBERON:0010083!1.07e-07!9;UBERON:0001134!1.17e-07!61;UBERON:0002036!1.17e-07!61;UBERON:0003082!1.17e-07!61;UBERON:0002371!3.17e-07!80;UBERON:0002385!5.36e-07!63;UBERON:0001015!5.36e-07!63;UBERON:0000383!5.36e-07!63;UBERON:0001474!9.68e-07!86 | |ontology_enrichment_uberon=UBERON:0002384!6.25e-24!375;UBERON:0002204!1.61e-15!167;UBERON:0000914!1.42e-12!83;UBERON:0002329!1.42e-12!83;UBERON:0003077!1.42e-12!83;UBERON:0003059!1.42e-12!83;UBERON:0007282!1.42e-12!83;UBERON:0009618!1.42e-12!83;UBERON:0007285!1.42e-12!83;UBERON:0004290!5.99e-12!70;UBERON:0002199!1.68e-10!45;UBERON:0002416!1.68e-10!45;UBERON:0002097!3.26e-10!40;UBERON:0000486!2.20e-09!82;UBERON:0004765!6.97e-08!101;UBERON:0001434!6.97e-08!101;UBERON:0002067!1.07e-07!9;UBERON:0004016!1.07e-07!9;UBERON:0010083!1.07e-07!9;UBERON:0001134!1.17e-07!61;UBERON:0002036!1.17e-07!61;UBERON:0003082!1.17e-07!61;UBERON:0002371!3.17e-07!80;UBERON:0002385!5.36e-07!63;UBERON:0001015!5.36e-07!63;UBERON:0000383!5.36e-07!63;UBERON:0001474!9.68e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0002067;2.41e-10;9!UBERON:0002097;6.73e-09;41!UBERON:0002385;4.65e-08;31!UBERON:0001015;4.65e-08;31!UBERON:0000383;4.65e-08;31!UBERON:0004237;7.96e-08;10!UBERON:0004695;7.96e-08;10!UBERON:0002111;7.96e-08;10!UBERON:0004178;7.96e-08;10!UBERON:0002199;1.70e-07;46!UBERON:0002416;1.70e-07;46 | |ontology_enrichment_uberon_v019=UBERON:0002067;2.41e-10;9!UBERON:0002097;6.73e-09;41!UBERON:0002385;4.65e-08;31!UBERON:0001015;4.65e-08;31!UBERON:0000383;4.65e-08;31!UBERON:0004237;7.96e-08;10!UBERON:0004695;7.96e-08;10!UBERON:0002111;7.96e-08;10!UBERON:0004178;7.96e-08;10!UBERON:0002199;1.70e-07;46!UBERON:0002416;1.70e-07;46 | ||
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| ||
|short_description=p1@RFX8 | |short_description=p1@RFX8 | ||
}} | }} |
Latest revision as of 00:09, 16 September 2015
Short description: | p1@RFX8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RFX8_5end |
Coexpression cluster: | C4110_schwannoma_Fibroblast_Hodgkin_Skeletal_biphenotypic_myxofibrosarcoma_Preadipocyte |
Association with transcript: | -401bp_to_ENST00000428343, ENST00000481179, NM_001145664, uc002tbb.1, uc010yvx.1_5end |
EntrezGene: | RFX8 |
HGNC: | 37253 |
UniProt: | Q6ZV50E9PDA6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 2.06e-36 | 427 |
somatic stem cell | 3.68e-35 | 433 |
stem cell | 4.93e-35 | 441 |
mesenchymal cell | 6.66e-28 | 354 |
connective tissue cell | 1.74e-26 | 361 |
motile cell | 5.36e-25 | 386 |
fibroblast | 2.24e-20 | 76 |
skin fibroblast | 2.25e-18 | 23 |
classical monocyte | 8.26e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.26e-11 | 42 |
myeloid cell | 2.09e-09 | 108 |
common myeloid progenitor | 2.09e-09 | 108 |
macrophage dendritic cell progenitor | 7.03e-09 | 61 |
defensive cell | 1.88e-08 | 48 |
phagocyte | 1.88e-08 | 48 |
fibroblast of dermis | 2.94e-08 | 6 |
granulocyte monocyte progenitor cell | 4.22e-08 | 67 |
monopoietic cell | 5.81e-08 | 59 |
monocyte | 5.81e-08 | 59 |
monoblast | 5.81e-08 | 59 |
promonocyte | 5.81e-08 | 59 |
aortic smooth muscle cell | 8.10e-08 | 10 |
myeloid lineage restricted progenitor cell | 2.58e-07 | 66 |
muscle precursor cell | 4.04e-07 | 58 |
myoblast | 4.04e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.04e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 5.18e-26 | 371 |
musculoskeletal system | 7.30e-16 | 167 |
integument | 1.20e-12 | 46 |
integumental system | 1.20e-12 | 46 |
skin of body | 9.56e-12 | 41 |
somite | 3.63e-11 | 71 |
presomitic mesoderm | 3.63e-11 | 71 |
presumptive segmental plate | 3.63e-11 | 71 |
dermomyotome | 3.63e-11 | 71 |
trunk paraxial mesoderm | 3.63e-11 | 71 |
paraxial mesoderm | 7.51e-11 | 72 |
presumptive paraxial mesoderm | 7.51e-11 | 72 |
dense mesenchyme tissue | 1.52e-10 | 73 |
dermis | 2.47e-10 | 9 |
dermatome | 2.47e-10 | 9 |
future dermis | 2.47e-10 | 9 |
bone marrow | 6.44e-10 | 76 |
bone element | 3.48e-09 | 82 |
epithelial vesicle | 3.76e-09 | 78 |
skeletal system | 3.92e-09 | 100 |
multilaminar epithelium | 5.87e-08 | 83 |
blood vessel smooth muscle | 8.10e-08 | 10 |
arterial system smooth muscle | 8.10e-08 | 10 |
artery smooth muscle tissue | 8.10e-08 | 10 |
aorta smooth muscle tissue | 8.10e-08 | 10 |
mesoderm | 1.80e-07 | 315 |
mesoderm-derived structure | 1.80e-07 | 315 |
presumptive mesoderm | 1.80e-07 | 315 |
skeletal element | 2.05e-07 | 90 |
immune system | 4.24e-07 | 93 |
surface structure | 9.48e-07 | 99 |
hematopoietic system | 9.56e-07 | 98 |
blood island | 9.56e-07 | 98 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.63e-08 | 14 |