FFCP PHASE1:Hg19::chr5:151047055..151047075,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:151047055..151047075,- to FFCP PHASE1:Hg19::chr5:151047055..151047075,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6678 | |EntrezGene=6678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11219 | |HGNC=11219 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=69bp_to_ENST00000537849_5end | |||
|cluster_id=chr5:151047055..151047075,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_5_at_SPARC_5end | |||
|id=chr5:151047055..151047075,- | |||
|ontology_enrichment_celltype=CL:0000055!2.74e-32!180;CL:0000057!1.48e-20!75;CL:0000222!1.43e-18!119;CL:0000183!1.25e-12!59;CL:0000680!4.07e-12!57;CL:0000056!4.07e-12!57;CL:0000355!4.07e-12!57;CL:0000187!1.52e-11!54;CL:0000192!2.49e-10!42;CL:0000514!2.49e-10!42;CL:0000393!2.86e-10!60;CL:0000211!2.86e-10!60;CL:0000136!5.46e-09!15;CL:0000359!5.14e-08!32;CL:0000213!6.25e-08!57;CL:0000215!6.25e-08!57;CL:0000220!3.27e-07!246;CL:0002321!4.74e-07!248;CL:0002334!4.96e-07!12;CL:0002620!5.35e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000134;4.35e-11;55!CL:0000723;4.03e-10;61!CL:0000048;4.11e-10;58!CL:0000057;1.16e-08;73!CL:0000136;1.36e-08;13!CL:0000192;3.17e-08;43!CL:0002320;3.18e-08;188!CL:0000349;3.79e-08;19!CL:0000359;4.13e-08;32!CL:0002334;1.28e-07;12!CL:0000187;2.25e-07;55!CL:0000034;5.07e-07;69!CL:0002620;6.17e-07;23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.34e-21,76;CL:0000222,2.36e-19,121;CL:0000680,1.77e-13,58;CL:0000056,1.77e-13,58;CL:0000355,1.77e-13,58;CL:0000187,7.55e-13,55;CL:0000192,2.25e-11,43;CL:0000514,2.25e-11,43;CL:0000393,1.95e-10,61;CL:0000211,1.95e-10,61;CL:0000136,1.02e-09,15;CL:0000048,6.18e-09,427;CL:0000359,1.19e-08,32;CL:0000349,3.54e-08,19;CL:0000723,5.24e-08,433;CL:0000213,7.02e-08,58;CL:0000215,7.02e-08,58;CL:0002334,1.43e-07,12;CL:0000034,3.83e-07,441;CL:0002620,6.29e-07,23 | |||
|ontology_enrichment_development_v019=CL:0000514;3.17e-08;43!CL:0000355;2.70e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004535!2.38e-16!110;UBERON:0004872!3.16e-16!84;UBERON:0001009!3.90e-16!113;UBERON:0002049!1.06e-15!79;UBERON:0007798!1.06e-15!79;UBERON:0000914!1.33e-13!83;UBERON:0002329!1.33e-13!83;UBERON:0003077!1.33e-13!83;UBERON:0003059!1.33e-13!83;UBERON:0007282!1.33e-13!83;UBERON:0009618!1.33e-13!83;UBERON:0007285!1.33e-13!83;UBERON:0004290!1.13e-12!70;UBERON:0000055!1.65e-12!69;UBERON:0001134!2.63e-12!61;UBERON:0002036!2.63e-12!61;UBERON:0003082!2.63e-12!61;UBERON:0002385!7.71e-12!63;UBERON:0001015!7.71e-12!63;UBERON:0000383!7.71e-12!63;UBERON:0001981!3.51e-11!60;UBERON:0007500!3.51e-11!60;UBERON:0004537!3.51e-11!60;UBERON:0006965!3.51e-11!60;UBERON:0000475!7.21e-11!365;UBERON:0003914!1.91e-10!118;UBERON:0005256!2.43e-10!143;UBERON:0000486!6.32e-10!82;UBERON:0001637!1.25e-09!42;UBERON:0003509!1.25e-09!42;UBERON:0004572!1.25e-09!42;UBERON:0000468!6.19e-09!659;UBERON:0000490!3.56e-08!138;UBERON:0001013!8.11e-08!14;UBERON:0004573!1.14e-07!33;UBERON:0004571!1.14e-07!33;UBERON:0000119!1.26e-07!312;UBERON:0000483!2.43e-07!309;UBERON:0000477!3.11e-07!286;UBERON:0004111!5.45e-07!241;UBERON:0002100!7.22e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;2.06e-08;14!UBERON:0002384;3.59e-08;198!UBERON:0001637;4.82e-08;42!UBERON:0003509;4.82e-08;42!UBERON:0004572;4.82e-08;42!UBERON:0004573;1.57e-07;33!UBERON:0004571;1.57e-07;33!UBERON:0002049;6.85e-07;75!UBERON:0007798;6.85e-07;75!UBERON:0000055;7.11e-07;65 | |||
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| ||
|short_description=p5@SPARC | |||
}} | }} |
Latest revision as of 10:03, 16 September 2015
Short description: | p5@SPARC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_SPARC_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 69bp_to_ENST00000537849_5end |
EntrezGene: | SPARC |
HGNC: | 11219 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.34e-21 | 76 |
mesodermal cell | 2.36e-19 | 121 |
muscle precursor cell | 1.77e-13 | 58 |
myoblast | 1.77e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.77e-13 | 58 |
muscle cell | 7.55e-13 | 55 |
smooth muscle cell | 2.25e-11 | 43 |
smooth muscle myoblast | 2.25e-11 | 43 |
electrically responsive cell | 1.95e-10 | 61 |
electrically active cell | 1.95e-10 | 61 |
fat cell | 1.02e-09 | 15 |
multi fate stem cell | 6.18e-09 | 427 |
vascular associated smooth muscle cell | 1.19e-08 | 32 |
extraembryonic cell | 3.54e-08 | 19 |
somatic stem cell | 5.24e-08 | 433 |
lining cell | 7.02e-08 | 58 |
barrier cell | 7.02e-08 | 58 |
preadipocyte | 1.43e-07 | 12 |
stem cell | 3.83e-07 | 441 |
skin fibroblast | 6.29e-07 | 23 |