FFCP PHASE1:Hg19::chr5:151066514..151066529,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6678 | |EntrezGene=6678 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11219 | |HGNC=11219 | ||
|TSSclassifier=strong | |||
|UniProt=E5RK62,E5RJA5,F5GY03,P09486 | |UniProt=E5RK62,E5RJA5,F5GY03,P09486 | ||
|association_with_transcript=0bp_to_ENST00000521569,ENST00000522348,ENST00000538026,NM_003118,uc003lui.2_5end | |association_with_transcript=0bp_to_ENST00000521569,ENST00000522348,ENST00000538026,NM_003118,uc003lui.2_5end | ||
|cluster_id=chr5:151066514..151066529,- | |||
|coexpression_cluster_id=C59 | |||
|description=CAGE_peak_3_at_SPARC_5end | |description=CAGE_peak_3_at_SPARC_5end | ||
|id=chr5:151066514..151066529,- | |id=chr5:151066514..151066529,- | ||
|ontology_enrichment_celltype=CL:0000055!5.77e-33!180;CL:0000057!3.25e-19!75;CL:0000222!3.39e-18!119;CL:0000183!1.09e-13!59;CL:0000680!3.38e-13!57;CL:0000056!3.38e-13!57;CL:0000355!3.38e-13!57;CL:0000187!1.15e-12!54;CL:0000192!3.35e-11!42;CL:0000514!3.35e-11!42;CL:0000393!7.15e-11!60;CL:0000211!7.15e-11!60;CL:0000136!5.38e-10!15;CL:0000359!1.12e-08!32;CL:0000220!6.86e-08!246;CL:0002321!1.11e-07!248 | |ontology_enrichment_celltype=CL:0000055!5.77e-33!180;CL:0000057!3.25e-19!75;CL:0000222!3.39e-18!119;CL:0000183!1.09e-13!59;CL:0000680!3.38e-13!57;CL:0000056!3.38e-13!57;CL:0000355!3.38e-13!57;CL:0000187!1.15e-12!54;CL:0000192!3.35e-11!42;CL:0000514!3.35e-11!42;CL:0000393!7.15e-11!60;CL:0000211!7.15e-11!60;CL:0000136!5.38e-10!15;CL:0000359!1.12e-08!32;CL:0000220!6.86e-08!246;CL:0002321!1.11e-07!248 | ||
|ontology_enrichment_celltype_v019=CL:0000134;9.72e-10;55!CL:0000136;3.75e-09;13!CL:0000048;6.94e-09;58!CL:0000723;9.95e-09;61!CL:0000192;1.93e-08;43!CL:0000359;2.85e-08;32!CL:0000057;5.01e-08;73!CL:0000187;1.55e-07;55!CL:0000349;1.79e-07;19!CL:0002320;1.90e-07;188 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,4.61e-20,76;CL:0000222,1.53e-18,121;CL:0000680,1.59e-13,58;CL:0000056,1.59e-13,58;CL:0000355,1.59e-13,58;CL:0000187,5.48e-13,55;CL:0000192,1.66e-11,43;CL:0000514,1.66e-11,43;CL:0000393,3.56e-11,61;CL:0000211,3.56e-11,61;CL:0000136,4.59e-10,15;CL:0000359,9.78e-09,32;CL:0002321,1.21e-07,250;CL:0000349,1.80e-07,19 | |||
|ontology_enrichment_development_v019=CL:0000514;1.93e-08;43!CL:0000355;1.98e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!5.43e-17!365;UBERON:0004872!4.72e-16!84;UBERON:0002049!3.64e-15!79;UBERON:0007798!3.64e-15!79;UBERON:0000914!5.43e-15!83;UBERON:0002329!5.43e-15!83;UBERON:0003077!5.43e-15!83;UBERON:0003059!5.43e-15!83;UBERON:0007282!5.43e-15!83;UBERON:0009618!5.43e-15!83;UBERON:0007285!5.43e-15!83;UBERON:0004535!2.50e-14!110;UBERON:0001009!3.88e-14!113;UBERON:0001134!9.71e-14!61;UBERON:0002036!9.71e-14!61;UBERON:0003082!9.71e-14!61;UBERON:0004290!1.49e-13!70;UBERON:0002385!2.39e-13!63;UBERON:0001015!2.39e-13!63;UBERON:0000383!2.39e-13!63;UBERON:0000468!8.78e-13!659;UBERON:0000055!1.23e-12!69;UBERON:0001981!2.32e-11!60;UBERON:0007500!2.32e-11!60;UBERON:0004537!2.32e-11!60;UBERON:0006965!2.32e-11!60;UBERON:0000119!3.59e-11!312;UBERON:0005256!4.30e-11!143;UBERON:0000486!7.25e-11!82;UBERON:0000483!8.90e-11!309;UBERON:0003914!3.67e-10!118;UBERON:0004111!5.97e-10!241;UBERON:0001637!8.86e-10!42;UBERON:0003509!8.86e-10!42;UBERON:0004572!8.86e-10!42;UBERON:0000477!1.99e-09!286;UBERON:0000467!2.63e-09!625;UBERON:0000480!3.31e-09!626;UBERON:0000025!8.00e-09!194;UBERON:0000490!1.36e-08!138;UBERON:0004573!3.36e-08!33;UBERON:0004571!3.36e-08!33;UBERON:0002100!6.14e-08!216;UBERON:0000481!1.36e-07!347;UBERON:0001013!2.38e-07!14 | |||
|ontology_enrichment_uberon_v019=UBERON:0002384;6.28e-08;198!UBERON:0004573;1.58e-07;33!UBERON:0004571;1.58e-07;33!UBERON:0001637;1.72e-07;42!UBERON:0003509;1.72e-07;42!UBERON:0004572;1.72e-07;42!UBERON:0001013;2.11e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,1.23e-15,83;UBERON:0002049,9.54e-15,78;UBERON:0007798,9.54e-15,78;UBERON:0007503,1.48e-14,78;UBERON:0007524,3.93e-14,73;UBERON:0001134,4.50e-14,62;UBERON:0002036,4.50e-14,62;UBERON:0003082,4.50e-14,62;UBERON:0002329,6.92e-14,71;UBERON:0003059,6.92e-14,71;UBERON:0007282,6.92e-14,71;UBERON:0004290,6.92e-14,71;UBERON:0009618,6.92e-14,71;UBERON:0004535,1.03e-13,109;UBERON:0003077,1.09e-13,72;UBERON:0007285,1.09e-13,72;UBERON:0002385,1.12e-13,64;UBERON:0001015,1.12e-13,64;UBERON:0000383,1.12e-13,64;UBERON:0001009,1.56e-13,112;UBERON:0000055,3.24e-12,68;UBERON:0000119,1.19e-11,309;UBERON:0000483,3.03e-11,306;UBERON:0003104,5.11e-11,160;UBERON:0009142,5.11e-11,160;UBERON:0000486,6.00e-11,83;UBERON:0005256,6.18e-11,122;UBERON:0007500,6.23e-11,59;UBERON:0001981,6.23e-11,59;UBERON:0004537,6.23e-11,59;UBERON:0006965,6.23e-11,59;UBERON:0004111,3.37e-10,240;UBERON:0003914,4.31e-10,117;UBERON:0001637,7.60e-10,42;UBERON:0003509,7.60e-10,42;UBERON:0004572,7.60e-10,42;UBERON:0010314,2.22e-09,132;UBERON:0000490,2.44e-09,148;UBERON:0000025,6.90e-09,192;UBERON:0004573,2.97e-08,33;UBERON:0004571,2.97e-08,33;UBERON:0001013,2.13e-07,14;UBERON:0000926,4.86e-07,315;UBERON:0004120,4.86e-07,315;UBERON:0006603,4.86e-07,315 | |||
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| ||
|short_description=p3@SPARC | |short_description=p3@SPARC | ||
}} | }} |
Latest revision as of 10:33, 16 September 2015
Short description: | p3@SPARC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPARC_5end |
Coexpression cluster: | C59_Smooth_Fibroblast_Mesenchymal_tenocyte_Ewing_skin_hepatic |
Association with transcript: | 0bp_to_ENST00000521569, ENST00000522348, ENST00000538026, NM_003118, uc003lui.2_5end |
EntrezGene: | SPARC |
HGNC: | 11219 |
UniProt: | E5RK62E5RJA5F5GY03P09486 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 4.61e-20 | 76 |
mesodermal cell | 1.53e-18 | 121 |
muscle precursor cell | 1.59e-13 | 58 |
myoblast | 1.59e-13 | 58 |
multi-potent skeletal muscle stem cell | 1.59e-13 | 58 |
muscle cell | 5.48e-13 | 55 |
smooth muscle cell | 1.66e-11 | 43 |
smooth muscle myoblast | 1.66e-11 | 43 |
electrically responsive cell | 3.56e-11 | 61 |
electrically active cell | 3.56e-11 | 61 |
fat cell | 4.59e-10 | 15 |
vascular associated smooth muscle cell | 9.78e-09 | 32 |
embryonic cell | 1.21e-07 | 250 |
extraembryonic cell | 1.80e-07 | 19 |