FFCP PHASE1:Hg19::chr17:56494882..56494902,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54894 | |EntrezGene=54894 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18505 | |HGNC=18505 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc002iwf.2_5end | |association_with_transcript=0bp_to_uc002iwf.2_5end | ||
|cluster_id=chr17:56494882..56494902,- | |||
|coexpression_cluster_id=C2423 | |||
|description=CAGE_peak_1_at_RNF43_5end | |description=CAGE_peak_1_at_RNF43_5end | ||
|id=chr17:56494882..56494902,- | |id=chr17:56494882..56494902,- | ||
|ontology_enrichment_celltype=CL:0000066!1.48e-22!254;CL:0000223!1.61e-20!59;CL:0002076!2.25e-16!43;CL:0002251!2.81e-10!21;CL:0002368!1.88e-07!13 | |ontology_enrichment_celltype=CL:0000066!1.48e-22!254;CL:0000223!1.61e-20!59;CL:0002076!2.25e-16!43;CL:0002251!2.81e-10!21;CL:0002368!1.88e-07!13 | ||
|ontology_enrichment_celltype_v019=CL:0002076;1.35e-14;42!CL:0002251;4.42e-11;20!CL:0002368;3.51e-09;13!CL:0002159;3.40e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000223,1.09e-22,58;CL:0000066,1.35e-21,253;CL:0002076,1.57e-18,42;CL:0002251,5.07e-11,20;CL:0002368,4.07e-09,13;CL:0002159,2.86e-07,14 | |||
|ontology_enrichment_development_v019=CL:0000223;4.92e-12;58!UBERON:0006595;1.38e-10;86!UBERON:0001041;1.47e-08;30!UBERON:0003104;6.76e-08;31!UBERON:0004161;7.97e-07;11 | |||
|ontology_enrichment_disease=DOID:305!3.54e-25!106;DOID:0050687!9.56e-17!143;DOID:1749!9.10e-10!14;DOID:162!1.78e-08!235;DOID:299!5.33e-08!25;DOID:14566!1.11e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.95e-12;14!DOID:305;8.55e-08;106!DOID:299;4.24e-07;25!DOID:3119;8.76e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,2.04e-22,106;DOID:0050687,2.03e-13,143;DOID:1749,4.43e-12,14;DOID:299,3.78e-07,25;DOID:7,5.11e-07,39;DOID:3119,8.22e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.94e-27!169;UBERON:0000925!2.94e-27!169;UBERON:0006595!2.94e-27!169;UBERON:0001007!2.06e-22!155;UBERON:0001555!2.06e-22!155;UBERON:0007026!2.06e-22!155;UBERON:0004921!1.78e-21!129;UBERON:0004185!1.78e-21!129;UBERON:0000077!5.28e-19!130;UBERON:0007023!7.78e-17!115;UBERON:0001041!4.21e-15!98;UBERON:0005911!1.09e-14!82;UBERON:0001004!1.29e-14!72;UBERON:0000062!6.89e-12!511;UBERON:0000481!6.96e-12!347;UBERON:0000065!1.28e-11!53;UBERON:0000064!2.59e-11!219;UBERON:0001048!1.02e-09!168;UBERON:0002530!1.13e-09!59;UBERON:0000466!1.33e-09!126;UBERON:0005177!1.70e-09!107;UBERON:0000063!4.16e-09!97;UBERON:0003929!7.36e-09!54;UBERON:0000072!1.91e-08!46;UBERON:0002365!2.69e-08!31;UBERON:0002330!2.69e-08!31;UBERON:0008947!4.19e-08!38;UBERON:0003258!4.19e-08!38;UBERON:0005153!4.07e-07!37;UBERON:0005157!4.17e-07!51;UBERON:0009569!4.21e-07!113;UBERON:0000464!8.40e-07!104;UBERON:0000344!8.54e-07!12;UBERON:0000161!9.82e-07!35 | |ontology_enrichment_uberon=UBERON:0004119!2.94e-27!169;UBERON:0000925!2.94e-27!169;UBERON:0006595!2.94e-27!169;UBERON:0001007!2.06e-22!155;UBERON:0001555!2.06e-22!155;UBERON:0007026!2.06e-22!155;UBERON:0004921!1.78e-21!129;UBERON:0004185!1.78e-21!129;UBERON:0000077!5.28e-19!130;UBERON:0007023!7.78e-17!115;UBERON:0001041!4.21e-15!98;UBERON:0005911!1.09e-14!82;UBERON:0001004!1.29e-14!72;UBERON:0000062!6.89e-12!511;UBERON:0000481!6.96e-12!347;UBERON:0000065!1.28e-11!53;UBERON:0000064!2.59e-11!219;UBERON:0001048!1.02e-09!168;UBERON:0002530!1.13e-09!59;UBERON:0000466!1.33e-09!126;UBERON:0005177!1.70e-09!107;UBERON:0000063!4.16e-09!97;UBERON:0003929!7.36e-09!54;UBERON:0000072!1.91e-08!46;UBERON:0002365!2.69e-08!31;UBERON:0002330!2.69e-08!31;UBERON:0008947!4.19e-08!38;UBERON:0003258!4.19e-08!38;UBERON:0005153!4.07e-07!37;UBERON:0005157!4.17e-07!51;UBERON:0009569!4.21e-07!113;UBERON:0000464!8.40e-07!104;UBERON:0000344!8.54e-07!12;UBERON:0000161!9.82e-07!35 | ||
|ontology_enrichment_uberon_v019=UBERON:0004921;3.92e-12;33!UBERON:0005409;6.63e-11;22!UBERON:0000160;1.48e-08;17!UBERON:0001555;1.71e-08;54!UBERON:0002365;3.76e-08;31!UBERON:0002330;3.76e-08;31!UBERON:0001007;4.04e-08;81!UBERON:0000065;6.40e-07;44 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.24e-27,160;UBERON:0000925,1.24e-27,160;UBERON:0006595,1.24e-27,160;UBERON:0001007,3.60e-24,145;UBERON:0001555,3.60e-24,145;UBERON:0007026,3.60e-24,145;UBERON:0004921,1.81e-23,118;UBERON:0005911,3.58e-15,82;UBERON:0001041,6.09e-15,87;UBERON:0011216,3.46e-13,223;UBERON:0001004,7.24e-13,74;UBERON:0000065,6.08e-10,54;UBERON:0005177,7.83e-10,101;UBERON:0007023,1.81e-09,114;UBERON:0003929,3.14e-09,54;UBERON:0005409,4.94e-09,25;UBERON:0005153,6.41e-09,37;UBERON:0001048,1.05e-08,160;UBERON:0002530,1.27e-08,59;UBERON:0000160,1.29e-08,17;UBERON:0002365,3.13e-08,31;UBERON:0002330,3.13e-08,31;UBERON:0005157,1.10e-07,47;UBERON:0009569,2.05e-07,112;UBERON:0008947,2.45e-07,38;UBERON:0003258,2.45e-07,38;UBERON:0005178,2.62e-07,34;UBERON:0002224,2.62e-07,34;UBERON:0000161,3.03e-07,36;UBERON:0005181,6.33e-07,35;UBERON:0009856,8.08e-07,26 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0,1.47440361900905,2.09340350391728,0.436882744260345,0.263766978228454,0,0,0,0,0,0,4.062994916534,0.612002073732759,4.38836610069323,0,0,0,13.4487594116394,10.3446742706932,12.5937250101887,0,0,0.154816123316076,2.75826367343678,1.8072355126695,4.06729411183466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.587237189370939,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0,0,0,0,0,0,0,0.383220493601921,0,0,0.318565414324097,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.189069634328136,0,0,3.66741411393595,8.37879163072847,6.3033355273353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0.264818361626438,0.286836620748814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.9147814277574,11.7280831854059,18.3554941048962,2.5614478287215,1.45782745153634,3.36962434321603,3.62813692553797,1.26160425437814,0,0,0,0,0,0,1.53798840051797,0.674338760312407,0.964044119533928,1.65440959098591,1.30727666455444,1.18635309555548,1.07865046528132,0.98110732562673,0.38474715694639,0,0,1.2347220339942,0,3.80265104465493,0.982827216677626,1.77236972004421,0,25.950560532597,0.171567810298526,13.1700342490351,7.86812272803337,6.8359701239909,7.77742939331649,0,0,0,0,0.352226082707465,0,0,0,12.6432703673484,11.1603201072333,0,0,0,2.81201501960331,14.1104987687042,11.2002326821485,3.40322386270824,1.16253575405585,2.30029607499127,0,0,0,0,0.37872730027914,0.063497894292169,0,0,0,0,0,1.14330573052231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.80863626235752,2.61460037580088,1.09970290300263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0.35142424497814,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,23.4467332207747,4.0101294060657,4.23572549105123,0,0,0,0.451199612907412,1.30926073077505,0.784349769176855,0,0.316654886678627,0,0,0,0,0,0,1.52925763827023,2.49322802678617,0.223874754722178,0,0,0,0,0,12.5710034210221,0,0,16.0794350638928,10.4009639365843,0,0,0,0,0,0,0,0,0,7.43782119124401,4.42037154939744,30.1166001487219,2.2254711788221,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0.318203247925937,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.94865648347262,2.01090682660736,1.08890984861323,11.1089684916599,3.01353760869861,6.73885902670502,1.7737206141467,3.90529780351831,0,0,0,0,0,0,0,0,0,0,2.94048259177238,0,0,0.142283686696828,0,0,0,0.846694330895531,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,3.69262196843137,0,0,0,10.4798702628603,0,0,4.90350890820905,9.37649284461163,1.19372242368845,1.48482340416319,0.614321404198464,0.994147647766298,0.281338832821026,0,0,2.11125408127993,2.39097585901284,5.8019622261541,19.3988215847793,0.511343412510774,11.2007172969573,0,0,1.9692329214317,0,2.66337195219721,0,0,0.969332746095218,1.29875337426592,0,13.0213880542617,8.92091999961196,0.724999575434793,7.62416103512848,10.4243996620034,3.07303986298317,0.344743373241465,6.9985107211981,0,0,0.964771509003264,10.6807215421958,14.1541452711968,4.43321428430321,1.31631238292384,0.21787692703798,12.9664082179101,3.07801034015188,0.341826167541004,0.23056390438806,0.987334088507493,3.25942115766024,1.5950057986596,0.274792780205587,2.13213910407454,2.04386596391473,0,0,0.451191321234361,0.392125068635479,0.167821586975843,0,0,1.89898258075224,6.36607951820676,27.8465550724863,47.60550074326,23.8862863458841,22.3797638193448,31.1625373916149,0,0,0,0.606610196826093,0,0.937057782901357,0,2.54364004611717,0,19.3346357396201,10.8891644443797,0.61214552326098,2.21153028699708,10.2219925201855,13.3757766902449,0,0,0,0,1.42304773014896,0,0.694238953340524,10.6811713181672,9.75063113700509,5.94070672022902,0,0,0,0,5.72235197281675,0.0882561266915003,1.80784592624426,0.137041924646751,0,1.58276989889697,8.79981222306614,8.33651730615951,7.04394882639863,0.599428828746391,12.8240471267154,19.013074963542,1.54435498075768,7.05868510141934,0,8.95637331543823,0,0,0,0,0,0,0,0,0.525774708558629,1.67569440763353,0.687481272035051,0,2.79550600698588,3.004582336956,1.11585728720936,4.0981918216903,0,36.1137443535107,40.3369893412985,39.0651168726729,44.823356663033,8.16948096572415,8.7213532027758,0,0.136203406111576,0.964518890790115,1.51293380256957,1.66176135211674,0.2249738915515,3.0952078182318,1.88323625639876,4.02521625119119,5.20117668174708,8.3927341015997,0.211200673038813,0,14.201724601639,5.00286728461357,1.32418394073086,0,0,0,0,0,0.574647645245373,0,1.35974509824151,3.51725360827398,3.97520666736664,0,0.13223260174269,9.40977608363812,0,5.33937062838473,5.50215067848831,7.45630299624952,0,0,16.6855859781827,57.4507131993164,0,0,0,0,50.4143648963252,1.77213635993397,1.34228891392159,0.876336514945499,2.29363678276028,2.88415533995816,0.869349641179368,0,1.74972571146949,0,0.570930667089935,0.470531639396343,0,2.75349954360568,0,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| ||
|short_description=p1@RNF43 | |short_description=p1@RNF43 | ||
}} | }} |
Latest revision as of 11:26, 16 September 2015
Short description: | p1@RNF43 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RNF43_5end |
Coexpression cluster: | C2423_small_signet_papillotubular_malignant_hepatocellular_maxillary_colon |
Association with transcript: | 0bp_to_uc002iwf.2_5end |
EntrezGene: | RNF43 |
HGNC: | 18505 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endodermal cell | 1.09e-22 | 58 |
epithelial cell | 1.35e-21 | 253 |
endo-epithelial cell | 1.57e-18 | 42 |
epithelial cell of alimentary canal | 5.07e-11 | 20 |
respiratory epithelial cell | 4.07e-09 | 13 |
general ecto-epithelial cell | 2.86e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.24e-27 | 160 |
endoderm | 1.24e-27 | 160 |
presumptive endoderm | 1.24e-27 | 160 |
digestive system | 3.60e-24 | 145 |
digestive tract | 3.60e-24 | 145 |
primitive gut | 3.60e-24 | 145 |
subdivision of digestive tract | 1.81e-23 | 118 |
endo-epithelium | 3.58e-15 | 82 |
foregut | 6.09e-15 | 87 |
organ system subdivision | 3.46e-13 | 223 |
respiratory system | 7.24e-13 | 74 |
respiratory tract | 6.08e-10 | 54 |
trunk region element | 7.83e-10 | 101 |
adult organism | 1.81e-09 | 114 |
gut epithelium | 3.14e-09 | 54 |
gastrointestinal system | 4.94e-09 | 25 |
epithelial bud | 6.41e-09 | 37 |
primordium | 1.05e-08 | 160 |
gland | 1.27e-08 | 59 |
intestine | 1.29e-08 | 17 |
exocrine gland | 3.13e-08 | 31 |
exocrine system | 3.13e-08 | 31 |
epithelial fold | 1.10e-07 | 47 |
subdivision of trunk | 2.05e-07 | 112 |
respiratory primordium | 2.45e-07 | 38 |
endoderm of foregut | 2.45e-07 | 38 |
thoracic cavity element | 2.62e-07 | 34 |
thoracic cavity | 2.62e-07 | 34 |
orifice | 3.03e-07 | 36 |
thoracic segment organ | 6.33e-07 | 35 |
sac | 8.08e-07 | 26 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.04e-22 | 106 |
cell type cancer | 2.03e-13 | 143 |
squamous cell carcinoma | 4.43e-12 | 14 |
adenocarcinoma | 3.78e-07 | 25 |
disease of anatomical entity | 5.11e-07 | 39 |
gastrointestinal system cancer | 8.22e-07 | 14 |