FFCP PHASE1:Hg19::chr11:130786333..130786399,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:130786333..130786399,- to FFCP PHASE1:Hg19::chr11:130786333..130786399,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=399979 | |EntrezGene=399979 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=21532 | |HGNC=21532 | ||
|TSSclassifier=strong | |||
|UniProt=E9PLV3,E9PKB9,F5H5D1,Q92543 | |UniProt=E9PLV3,E9PKB9,F5H5D1,Q92543 | ||
|association_with_transcript=0bp_to_ENST00000528555,ENST00000530356,ENST00000531608,ENST00000533214,ENST00000533318,ENST00000539184,NM_014758,uc001qgk.3,uc001qgl.3,uc009zcx.1,uc010sce.1,uc010scf.1,uc010scg.1_5end | |||
|cluster_id=chr11:130786333..130786399,- | |||
|description=CAGE_peak_1_at_SNX19_5end | |||
|id=chr11:130786333..130786399,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.48e-24!115;UBERON:0002616!4.24e-12!59;UBERON:0001049!5.69e-12!57;UBERON:0005068!5.69e-12!57;UBERON:0006241!5.69e-12!57;UBERON:0007135!5.69e-12!57;UBERON:0002780!1.53e-10!41;UBERON:0001890!1.53e-10!41;UBERON:0006240!1.53e-10!41;UBERON:0003075!3.52e-10!86;UBERON:0007284!3.52e-10!86;UBERON:0003080!7.44e-10!42;UBERON:0000955!1.06e-09!69;UBERON:0006238!1.06e-09!69;UBERON:0002346!2.61e-09!90;UBERON:0000073!7.28e-09!94;UBERON:0001016!7.28e-09!94;UBERON:0001893!8.91e-09!34;UBERON:0005743!1.30e-08!86;UBERON:0000153!2.27e-08!129;UBERON:0007811!2.27e-08!129;UBERON:0004121!2.34e-08!169;UBERON:0002020!2.60e-08!34;UBERON:0003528!2.60e-08!34;UBERON:0002791!2.89e-08!33;UBERON:0000033!3.96e-08!123;UBERON:0001017!4.56e-08!82;UBERON:0000924!7.16e-08!173;UBERON:0006601!7.16e-08!173;UBERON:0001869!1.09e-07!32;UBERON:0003056!1.38e-07!61 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;4.26e-08;41!UBERON:0001890;4.26e-08;41!UBERON:0000073;1.19e-07;53!UBERON:0002616;1.19e-07;53!UBERON:0001893;1.57e-07;34!UBERON:0007023;2.32e-07;114!UBERON:0003528;5.53e-07;34!UBERON:0002020;5.53e-07;34!UBERON:0002791;6.24e-07;32!UBERON:0001869;7.13e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.35e-23,114;UBERON:0001049,1.28e-12,56;UBERON:0005068,1.28e-12,56;UBERON:0006241,1.28e-12,56;UBERON:0007135,1.28e-12,56;UBERON:0000073,5.13e-12,53;UBERON:0002616,5.13e-12,53;UBERON:0003075,3.75e-11,82;UBERON:0007284,3.75e-11,82;UBERON:0002780,1.53e-10,41;UBERON:0001890,1.53e-10,41;UBERON:0003080,1.53e-10,41;UBERON:0006240,1.53e-10,41;UBERON:0000955,3.41e-10,68;UBERON:0006238,3.41e-10,68;UBERON:0002346,3.46e-10,86;UBERON:0010371,1.56e-09,104;UBERON:0010314,5.49e-09,132;UBERON:0001893,8.91e-09,34;UBERON:0001016,1.07e-08,89;UBERON:0001017,1.85e-08,81;UBERON:0003056,2.49e-08,61;UBERON:0004121,2.58e-08,171;UBERON:0000924,2.58e-08,171;UBERON:0006601,2.58e-08,171;UBERON:0003528,2.60e-08,34;UBERON:0002020,2.60e-08,34;UBERON:0002791,1.00e-07,32;UBERON:0001869,1.09e-07,32 | |||
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| ||
|short_description=p1@SNX19 | |||
}} | }} |
Latest revision as of 18:42, 16 September 2015
Short description: | p1@SNX19 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNX19_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000528555, ENST00000530356, ENST00000531608, ENST00000533214, ENST00000533318, ENST00000539184, NM_014758, uc001qgk.3, uc001qgl.3, uc009zcx.1, uc010sce.1, uc010scf.1, uc010scg.1_5end |
EntrezGene: | SNX19 |
HGNC: | 21532 |
UniProt: | E9PLV3E9PKB9F5H5D1Q92543 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 1.35e-23 | 114 |
neural tube | 1.28e-12 | 56 |
neural rod | 1.28e-12 | 56 |
future spinal cord | 1.28e-12 | 56 |
neural keel | 1.28e-12 | 56 |
regional part of nervous system | 5.13e-12 | 53 |
regional part of brain | 5.13e-12 | 53 |
neural plate | 3.75e-11 | 82 |
presumptive neural plate | 3.75e-11 | 82 |
regional part of forebrain | 1.53e-10 | 41 |
forebrain | 1.53e-10 | 41 |
anterior neural tube | 1.53e-10 | 41 |
future forebrain | 1.53e-10 | 41 |
brain | 3.41e-10 | 68 |
future brain | 3.41e-10 | 68 |
neurectoderm | 3.46e-10 | 86 |
ecto-epithelium | 1.56e-09 | 104 |
structure with developmental contribution from neural crest | 5.49e-09 | 132 |
telencephalon | 8.91e-09 | 34 |
nervous system | 1.07e-08 | 89 |
central nervous system | 1.85e-08 | 81 |
pre-chordal neural plate | 2.49e-08 | 61 |
ectoderm-derived structure | 2.58e-08 | 171 |
ectoderm | 2.58e-08 | 171 |
presumptive ectoderm | 2.58e-08 | 171 |
brain grey matter | 2.60e-08 | 34 |
gray matter | 2.60e-08 | 34 |
regional part of telencephalon | 1.00e-07 | 32 |
cerebral hemisphere | 1.09e-07 | 32 |