FFCP PHASE1:Hg19::chr7:142180964..142180969,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=12230 | |HGNC=12230 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=46bp_to_ENST00000390368,uc011krz.1_5end | |association_with_transcript=46bp_to_ENST00000390368,uc011krz.1_5end | ||
|cluster_id=chr7:142180964..142180969,- | |||
|coexpression_cluster_id=C496 | |||
|description=CAGE_peak_4_at_TRBV6-5_5end | |description=CAGE_peak_4_at_TRBV6-5_5end | ||
|id=chr7:142180964..142180969,- | |id=chr7:142180964..142180969,- | ||
|ontology_enrichment_celltype=CL:0000791!2.04e-43!18;CL:0000789!2.04e-43!18;CL:0002420!2.04e-43!18;CL:0002419!2.04e-43!18;CL:0000790!2.04e-43!18;CL:0000084!2.96e-36!25;CL:0000827!2.96e-36!25;CL:0000625!3.33e-32!11;CL:0000898!9.52e-18!3;CL:0000838!4.55e-16!52;CL:0000542!1.03e-15!53;CL:0000051!1.03e-15!53;CL:0000624!1.50e-15!6;CL:0000815!1.62e-12!2;CL:0000792!1.62e-12!2;CL:0002677!1.62e-12!2;CL:0000810!6.12e-07!1;CL:0000895!6.12e-07!1;CL:0002436!6.12e-07!1;CL:0002427!6.12e-07!1;CL:0002428!6.12e-07!1;CL:0002429!6.12e-07!1;CL:0002433!6.12e-07!1;CL:0002431!6.12e-07!1;CL:0002432!6.12e-07!1 | |ontology_enrichment_celltype=CL:0000791!2.04e-43!18;CL:0000789!2.04e-43!18;CL:0002420!2.04e-43!18;CL:0002419!2.04e-43!18;CL:0000790!2.04e-43!18;CL:0000084!2.96e-36!25;CL:0000827!2.96e-36!25;CL:0000625!3.33e-32!11;CL:0000898!9.52e-18!3;CL:0000838!4.55e-16!52;CL:0000542!1.03e-15!53;CL:0000051!1.03e-15!53;CL:0000624!1.50e-15!6;CL:0000815!1.62e-12!2;CL:0000792!1.62e-12!2;CL:0002677!1.62e-12!2;CL:0000810!6.12e-07!1;CL:0000895!6.12e-07!1;CL:0002436!6.12e-07!1;CL:0002427!6.12e-07!1;CL:0002428!6.12e-07!1;CL:0002429!6.12e-07!1;CL:0002433!6.12e-07!1;CL:0002431!6.12e-07!1;CL:0002432!6.12e-07!1 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.07e-15;25!CL:0000791;8.64e-14;18!CL:0000789;8.64e-14;18!CL:0002419;8.64e-14;18!CL:0000625;4.66e-13;11!CL:0000815;7.21e-09;2!CL:0000792;7.21e-09;2!CL:0002677;7.21e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,2.60e-15,25;CL:0000827,2.60e-15,25;CL:0000791,7.69e-14,18;CL:0000789,7.69e-14,18;CL:0002420,7.69e-14,18;CL:0002419,7.69e-14,18;CL:0000790,7.69e-14,18;CL:0000625,4.11e-13,11;CL:0000815,6.94e-09,2;CL:0000792,6.94e-09,2;CL:0002677,6.94e-09,2;CL:0000838,2.32e-07,52;CL:0000542,3.20e-07,53;CL:0000051,3.20e-07,53 | |||
|ontology_enrichment_development_v019=CL:0000790;8.64e-14;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!4.12e-14!4;UBERON:0005058!4.12e-14!4;UBERON:0009113!4.12e-14!4;UBERON:0003295!4.12e-14!4;UBERON:0005562!4.12e-14!4;UBERON:0001042!1.29e-09!10;UBERON:0009145!1.29e-09!10;UBERON:0003351!1.45e-09!6;UBERON:0006562!9.47e-09!11;UBERON:0004177!2.92e-08!7;UBERON:0002372!6.49e-07!1;UBERON:0001961!6.49e-07!1;UBERON:0001744!6.49e-07!1;UBERON:0001735!6.49e-07!1 | |ontology_enrichment_uberon=UBERON:0002370!4.12e-14!4;UBERON:0005058!4.12e-14!4;UBERON:0009113!4.12e-14!4;UBERON:0003295!4.12e-14!4;UBERON:0005562!4.12e-14!4;UBERON:0001042!1.29e-09!10;UBERON:0009145!1.29e-09!10;UBERON:0003351!1.45e-09!6;UBERON:0006562!9.47e-09!11;UBERON:0004177!2.92e-08!7;UBERON:0002372!6.49e-07!1;UBERON:0001961!6.49e-07!1;UBERON:0001744!6.49e-07!1;UBERON:0001735!6.49e-07!1 | ||
|ontology_enrichment_uberon_v019=UBERON:0002370;3.35e-32;2!UBERON:0005058;3.35e-32;2!UBERON:0009113;3.35e-32;2!UBERON:0004177;1.63e-13;5!UBERON:0005057;1.63e-13;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.21e-16,4;UBERON:0005058,1.21e-16,4;UBERON:0009113,1.21e-16,4;UBERON:0003295,1.21e-16,4;UBERON:0005562,1.21e-16,4;UBERON:0003351,2.02e-11,6;UBERON:0004177,6.40e-10,7;UBERON:0005057,6.40e-10,7;UBERON:0000974,3.33e-07,10;UBERON:0003408,3.33e-07,10;UBERON:0001042,3.33e-07,10;UBERON:0009145,3.33e-07,10 | |||
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|short_description=p4@TRBV6-5 | |short_description=p4@TRBV6-5 | ||
}} | }} |
Latest revision as of 19:59, 16 September 2015
Short description: | p4@TRBV6-5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRBV6-5_5end |
Coexpression cluster: | C496_thymus_CD4_CD8_hairy_vein_chronic_Peripheral |
Association with transcript: | 46bp_to_ENST00000390368, uc011krz.1_5end |
EntrezGene: | NA |
HGNC: | 12230 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 2.60e-15 | 25 |
pro-T cell | 2.60e-15 | 25 |
mature alpha-beta T cell | 7.69e-14 | 18 |
alpha-beta T cell | 7.69e-14 | 18 |
immature T cell | 7.69e-14 | 18 |
mature T cell | 7.69e-14 | 18 |
immature alpha-beta T cell | 7.69e-14 | 18 |
CD8-positive, alpha-beta T cell | 4.11e-13 | 11 |
regulatory T cell | 6.94e-09 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.94e-09 | 2 |
naive regulatory T cell | 6.94e-09 | 2 |
lymphoid lineage restricted progenitor cell | 2.32e-07 | 52 |
lymphocyte | 3.20e-07 | 53 |
common lymphoid progenitor | 3.20e-07 | 53 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.21e-16 | 4 |
hemolymphoid system gland | 1.21e-16 | 4 |
thymic region | 1.21e-16 | 4 |
pharyngeal gland | 1.21e-16 | 4 |
thymus primordium | 1.21e-16 | 4 |
pharyngeal epithelium | 2.02e-11 | 6 |
hemopoietic organ | 6.40e-10 | 7 |
immune organ | 6.40e-10 | 7 |
neck | 3.33e-07 | 10 |
gland of gut | 3.33e-07 | 10 |
chordate pharynx | 3.33e-07 | 10 |
pharyngeal region of foregut | 3.33e-07 | 10 |