FFCP PHASE1:Hg19::chr1:24742339..24742359,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:24742339..24742359,+
|short_description=p2@NIPAL3
|description=CAGE_peak_2_at_NIPAL3_5end
|association_with_transcript=0bp_to_ENST00000475663_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=57185 | |EntrezGene=57185 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25233 | |HGNC=25233 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000475663_5end | |||
|cluster_id=chr1:24742339..24742359,+ | |||
|description=CAGE_peak_2_at_NIPAL3_5end | |||
|id=chr1:24742339..24742359,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000349;5.35e-08;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.15e-07,19 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000064!9.14e-10!219;UBERON:0001049!9.29e-09!57;UBERON:0005068!9.29e-09!57;UBERON:0006241!9.29e-09!57;UBERON:0007135!9.29e-09!57;UBERON:0000153!1.75e-08!129;UBERON:0007811!1.75e-08!129;UBERON:0000475!2.00e-08!365;UBERON:0002616!2.18e-08!59;UBERON:0000033!3.17e-08!123;UBERON:0005631!6.70e-08!14;UBERON:0000158!6.70e-08!14;UBERON:0007023!1.75e-07!115;UBERON:0002780!6.66e-07!41;UBERON:0001890!6.66e-07!41;UBERON:0006240!6.66e-07!41;UBERON:0004121!9.44e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;2.97e-09;10!UBERON:0000158;2.97e-09;10!UBERON:0000073;2.36e-07;53!UBERON:0002616;2.36e-07;53!UBERON:0000305;5.12e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.51e-12,53;UBERON:0002616,1.51e-12,53;UBERON:0001049,3.60e-12,56;UBERON:0005068,3.60e-12,56;UBERON:0006241,3.60e-12,56;UBERON:0007135,3.60e-12,56;UBERON:0010371,1.23e-10,104;UBERON:0005631,2.51e-10,14;UBERON:0000158,2.51e-10,14;UBERON:0000955,5.35e-09,68;UBERON:0006238,5.35e-09,68;UBERON:0002780,8.93e-09,41;UBERON:0001890,8.93e-09,41;UBERON:0003080,8.93e-09,41;UBERON:0006240,8.93e-09,41;UBERON:0004121,3.35e-08,171;UBERON:0000924,3.35e-08,171;UBERON:0006601,3.35e-08,171;UBERON:0001893,1.84e-07,34;UBERON:0001017,1.95e-07,81;UBERON:0003075,2.31e-07,82;UBERON:0007284,2.31e-07,82;UBERON:0003528,2.61e-07,34;UBERON:0002020,2.61e-07,34;UBERON:0004871,4.95e-07,8 | |||
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| ||
|short_description=p2@NIPAL3 | |||
}} | }} |
Latest revision as of 23:32, 16 September 2015
Short description: | p2@NIPAL3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_NIPAL3_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000475663_5end |
EntrezGene: | NIPAL3 |
HGNC: | 25233 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.15e-07 | 19 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.51e-12 | 53 |
regional part of brain | 1.51e-12 | 53 |
neural tube | 3.60e-12 | 56 |
neural rod | 3.60e-12 | 56 |
future spinal cord | 3.60e-12 | 56 |
neural keel | 3.60e-12 | 56 |
ecto-epithelium | 1.23e-10 | 104 |
extraembryonic membrane | 2.51e-10 | 14 |
membranous layer | 2.51e-10 | 14 |
brain | 5.35e-09 | 68 |
future brain | 5.35e-09 | 68 |
regional part of forebrain | 8.93e-09 | 41 |
forebrain | 8.93e-09 | 41 |
anterior neural tube | 8.93e-09 | 41 |
future forebrain | 8.93e-09 | 41 |
ectoderm-derived structure | 3.35e-08 | 171 |
ectoderm | 3.35e-08 | 171 |
presumptive ectoderm | 3.35e-08 | 171 |
telencephalon | 1.84e-07 | 34 |
central nervous system | 1.95e-07 | 81 |
neural plate | 2.31e-07 | 82 |
presumptive neural plate | 2.31e-07 | 82 |
brain grey matter | 2.61e-07 | 34 |
gray matter | 2.61e-07 | 34 |
somatic layer of lateral plate mesoderm | 4.95e-07 | 8 |