FFCP PHASE1:Hg19::chr12:123011536..123011547,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=65117 | |EntrezGene=65117 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30559 | |HGNC=30559 | ||
|TSSclassifier=strong | |||
|UniProt=Q7L4I2,F5GXM2,E9PI52 | |UniProt=Q7L4I2,F5GXM2,E9PI52 | ||
|association_with_transcript=0bp_to_ENST00000331738,ENST00000354654,ENST00000418773,ENST00000527399,ENST00000532695,uc001ucp.2,uc001ucq.2,uc001ucr.2,uc001ucs.2,uc001uct.2,uc001ucu.2_5end | |association_with_transcript=0bp_to_ENST00000331738,ENST00000354654,ENST00000418773,ENST00000527399,ENST00000532695,uc001ucp.2,uc001ucq.2,uc001ucr.2,uc001ucs.2,uc001uct.2,uc001ucu.2_5end | ||
|cluster_id=chr12:123011536..123011547,- | |||
|coexpression_cluster_id=C2194 | |coexpression_cluster_id=C2194 | ||
|description=CAGE_peak_2_at_RSRC2_5end | |description=CAGE_peak_2_at_RSRC2_5end | ||
|id=chr12:123011536..123011547,- | |id=chr12:123011536..123011547,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype=CL:0000037!4.48e-27!172;CL:0000566!4.48e-27!172;CL:0000988!1.65e-24!182;CL:0002032!5.95e-24!165;CL:0000837!5.95e-24!165;CL:0000738!6.28e-22!140;CL:0002031!1.16e-15!124;CL:0002087!3.38e-14!119;CL:0000763!1.01e-12!112;CL:0000049!1.01e-12!112;CL:0000542!2.00e-11!53;CL:0000051!2.00e-11!53;CL:0000838!4.84e-11!52;CL:0000766!1.51e-07!76;CL:0002057!3.35e-07!42 | ||
| | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.33e-28,168;CL:0000988,2.09e-26,177;CL:0002032,2.15e-25,161;CL:0000837,2.15e-25,161;CL:0000738,1.91e-23,136;CL:0002031,5.90e-17,120;CL:0002087,1.95e-15,115;CL:0000763,6.50e-14,108;CL:0000049,6.50e-14,108;CL:0000542,1.91e-11,53;CL:0000051,1.91e-11,53;CL:0000838,4.64e-11,52;CL:0000766,1.35e-08,72;CL:0000860,3.26e-07,42;CL:0002057,3.26e-07,42;CL:0000557,7.18e-07,67 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_uberon=UBERON:0000922;4.78e-07;49 | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.34e-16!115;UBERON:0001049!8.33e-09!57;UBERON:0005068!8.33e-09!57;UBERON:0006241!8.33e-09!57;UBERON:0007135!8.33e-09!57;UBERON:0003080!1.19e-08!42;UBERON:0002780!1.45e-08!41;UBERON:0001890!1.45e-08!41;UBERON:0006240!1.45e-08!41;UBERON:0001017!3.37e-08!82;UBERON:0002390!5.46e-08!102;UBERON:0003061!5.46e-08!102;UBERON:0000073!9.68e-08!94;UBERON:0001016!9.68e-08!94;UBERON:0005743!2.45e-07!86;UBERON:0002020!9.59e-07!34;UBERON:0003528!9.59e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;4.78e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.17e-16,114;UBERON:0002390,6.84e-09,98;UBERON:0003061,6.84e-09,98;UBERON:0001049,1.28e-08,56;UBERON:0005068,1.28e-08,56;UBERON:0006241,1.28e-08,56;UBERON:0007135,1.28e-08,56;UBERON:0002780,1.41e-08,41;UBERON:0001890,1.41e-08,41;UBERON:0003080,1.41e-08,41;UBERON:0006240,1.41e-08,41;UBERON:0001016,2.14e-08,89;UBERON:0001017,5.14e-08,81;UBERON:0000073,8.40e-08,53;UBERON:0002616,8.40e-08,53;UBERON:0003528,9.38e-07,34;UBERON:0002020,9.38e-07,34 | |||
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| ||
|short_description=p2@RSRC2 | |short_description=p2@RSRC2 | ||
}} | }} |
Latest revision as of 00:18, 17 September 2015
Short description: | p2@RSRC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RSRC2_5end |
Coexpression cluster: | C2194_Mast_CD4_cord_embryonic_hepatoblastoma_cerebellum_lung |
Association with transcript: | 0bp_to_ENST00000331738, ENST00000354654, ENST00000418773, ENST00000527399, ENST00000532695, uc001ucp.2, uc001ucq.2, uc001ucr.2, uc001ucs.2, uc001uct.2, uc001ucu.2_5end |
EntrezGene: | RSRC2 |
HGNC: | 30559 |
UniProt: | Q7L4I2F5GXM2E9PI52 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.33e-28 | 168 |
hematopoietic cell | 2.09e-26 | 177 |
hematopoietic oligopotent progenitor cell | 2.15e-25 | 161 |
hematopoietic multipotent progenitor cell | 2.15e-25 | 161 |
leukocyte | 1.91e-23 | 136 |
hematopoietic lineage restricted progenitor cell | 5.90e-17 | 120 |
nongranular leukocyte | 1.95e-15 | 115 |
myeloid cell | 6.50e-14 | 108 |
common myeloid progenitor | 6.50e-14 | 108 |
lymphocyte | 1.91e-11 | 53 |
common lymphoid progenitor | 1.91e-11 | 53 |
lymphoid lineage restricted progenitor cell | 4.64e-11 | 52 |
myeloid leukocyte | 1.35e-08 | 72 |
classical monocyte | 3.26e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.26e-07 | 42 |
granulocyte monocyte progenitor cell | 7.18e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.17e-16 | 114 |
hematopoietic system | 6.84e-09 | 98 |
blood island | 6.84e-09 | 98 |
neural tube | 1.28e-08 | 56 |
neural rod | 1.28e-08 | 56 |
future spinal cord | 1.28e-08 | 56 |
neural keel | 1.28e-08 | 56 |
regional part of forebrain | 1.41e-08 | 41 |
forebrain | 1.41e-08 | 41 |
anterior neural tube | 1.41e-08 | 41 |
future forebrain | 1.41e-08 | 41 |
nervous system | 2.14e-08 | 89 |
central nervous system | 5.14e-08 | 81 |
regional part of nervous system | 8.40e-08 | 53 |
regional part of brain | 8.40e-08 | 53 |
brain grey matter | 9.38e-07 | 34 |
gray matter | 9.38e-07 | 34 |