FFCP PHASE1:Hg19::chr4:1857794..1857805,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3954 | |EntrezGene=3954 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6556 | |HGNC=6556 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-96bp_to_ENST00000512189_5end | |association_with_transcript=-96bp_to_ENST00000512189_5end | ||
|cluster_id=chr4:1857794..1857805,- | |||
|description=CAGE_peak_3_at_LETM1_5end | |description=CAGE_peak_3_at_LETM1_5end | ||
|id=chr4:1857794..1857805,- | |id=chr4:1857794..1857805,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000784;1.84e-12;3!CL:0002592;1.84e-12;3!CL:1000746;3.33e-09;7!CL:1000612;3.33e-09;7!CL:0000650;7.17e-09;2!CL:1000500;7.17e-09;2!CL:1000618;7.17e-09;2!CL:1001318;7.17e-09;2!CL:0002173;7.17e-09;2!CL:0002681;3.55e-08;12!CL:0002584;3.55e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0002592,2.72e-12,3;CL:0000784,3.31e-12,3;CL:1000746,4.88e-09,7;CL:1000612,4.88e-09,7;CL:0000650,1.42e-08,2;CL:1000500,1.42e-08,2;CL:1000618,1.42e-08,2;CL:1001318,1.42e-08,2;CL:0002173,1.42e-08,2;CL:0002681,4.60e-08,12;CL:0002584,4.60e-08,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0003498;1.84e-12;3!UBERON:0005985;1.84e-12;3!UBERON:0001621;1.84e-12;3!UBERON:0002370;2.66e-09;2!UBERON:0005058;2.66e-09;2!UBERON:0009113;2.66e-09;2!UBERON:0000074;3.33e-09;7!UBERON:0001229;3.33e-09;7!UBERON:0000353;4.65e-09;15!UBERON:0003567;7.17e-09;2!UBERON:0003838;7.17e-09;2!UBERON:0003586;7.17e-09;2!UBERON:0005169;7.17e-09;2!UBERON:0002321;7.17e-09;2!UBERON:0005215;7.17e-09;2!UBERON:0002303;7.17e-09;2!UBERON:0002319;7.17e-09;2!UBERON:0001225;3.55e-08;12!UBERON:0008987;3.55e-08;12!UBERON:0006554;3.03e-07;30!UBERON:0001008;3.03e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001621,2.72e-12,3;UBERON:0010532,4.88e-09,7;UBERON:0000074,4.88e-09,7;UBERON:0001229,4.88e-09,7;UBERON:0001230,4.88e-09,7;UBERON:0003220,4.88e-09,7;UBERON:0005749,4.88e-09,7;UBERON:0004199,4.88e-09,7;UBERON:0004209,4.88e-09,7;UBERON:0004198,4.88e-09,7;UBERON:0000353,5.41e-09,15;UBERON:0003567,1.42e-08,2;UBERON:0003838,1.42e-08,2;UBERON:0003586,1.42e-08,2;UBERON:0005169,1.42e-08,2;UBERON:0002321,1.42e-08,2;UBERON:0005215,1.42e-08,2;UBERON:0002303,1.42e-08,2;UBERON:0002319,1.42e-08,2;UBERON:0003103,3.17e-08,68;UBERON:0001225,4.60e-08,12;UBERON:0008987,4.60e-08,12;UBERON:0005103,6.46e-08,8;UBERON:0000083,6.46e-08,8;UBERON:0009201,6.46e-08,8;UBERON:0006553,6.46e-08,8;UBERON:0003074,6.46e-08,8;UBERON:0003060,6.46e-08,8;UBERON:0003498,1.49e-07,5;UBERON:0005985,1.49e-07,5;UBERON:0000080,4.83e-07,9;UBERON:0002120,4.83e-07,9;UBERON:0004875,4.83e-07,9;UBERON:0005721,4.83e-07,9;UBERON:0005754,4.83e-07,9;UBERON:0007297,4.83e-07,9 | |||
|phase1_expression=0.363356758541113,3.42560838225573,0.704772020479856,0,2.68176656656373,0,7.59899634504932,0,0,1.72013755551056,0,0,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0,0,0.123121058076788,0,0.940364164434263,0,0.136874425072884,0.125542639594803,0.152826811495903,0.246301768349837,0.157421562627358,0,0.767658796194425,0,0.919421224478927,0.6024118375565,0.369754010166788,0.46480320348181,0.142169232487422,0.293600439334847,0,0,0,0.223915474239924,0,0.515151135268373,0.145398238779565,0,0,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0,0.344745680736619,0,0,0.188242339542605,0.272906150057846,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0.368277635987565,0,0,0,0.209658645508376,0.112328631146495,0.300353785683013,0.16072558669708,0,0,0,0,0,0,0.426730222566507,0.400395987036012,0,0,0.954053754535364,0,0,0,0,0,0.263384084775077,0,0,0.411202997999018,0.167186495390678,0,0,0,0,0,0.443067789167242,0,0,0,0,0,0,0,0.267540828089713,0,0,0.383220493601921,0,0,0.318565414324097,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0.534880391567015,0.289648807765598,0,0,0.383587685530591,0,0.50133791063589,0.434539556882471,0,0.486634870302636,0.189069634328136,0,0.263504357079378,0.458426764241994,0.728590576585084,0.370784442784429,1.29818957461873,0.174129737299267,0,1.43094374583205,1.14398982156026,1.11437250398869,1.19257444420023,0,1.38856200643038,1.13061588384802,0.838998872419812,0.550236083880135,0.626984899610432,0.258416759169329,0,0,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0.563057402416611,0,0.949265659568129,0,0,0,0,0.496971951695318,0,0.264818361626438,0.860509862246441,0.354668382198357,0.560677600142307,1.06748995729705,0.24666754841716,0,0.134710672069688,0.326923806226917,0.302714855289863,0.576175924479999,0.234321431833797,0.936480230490962,0.570471821544449,0.298897361103602,0.117434498643765,0.323745888736263,0.280901613404497,0,0.368502951935304,0.103325781175765,0,0.247266929278557,0,0,0,0.125118519871964,0.831192346452549,0.438977620880838,0,0.150238058906597,0,0.89694817844431,0,0,0,0.103052529238439,0.772921620136887,0.37223371266318,0.675105328965065,0.0974370051611986,0.252433774244115,0.184099797284599,0.323292113637624,0.710019185033229,0.10075209822764,0.169560592310488,0.773043412653187,0,2.00763216772303,0,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0,0,0,0,0.118306800039844,0.842923450390509,0,0.220587945464788,0.217879444092406,0,0.134831308160164,0,0.38474715694639,0,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0.441463099414651,0.245976877086227,0,0.768251997860379,0,0.201057944823262,0.277765335475589,0,0,0,0,0.234817388471643,0.144366447761074,0,0.380508304469197,0.790204397959275,0,0.246217006087397,0.702012795417713,0.148631162288728,0.93733833986777,0.503946384596579,0.283550194484773,0.268675568108545,0.581267877027924,0,0,0.088048434013226,0.207328115540772,0.144119953416961,0.12624243342638,0.444485260045183,1.14596527667483,0,0,0.719792448923265,0,0.571652865261156,0.560655421726804,0.43596006883328,0.22001485746285,0.258543431515556,0,0,0.531876233169741,0,0.514414748524284,0,0.799266537048298,0.285955987316295,0,0,0,0.710783897485092,0,0.301439377059586,0,0.199945982364114,0,0,0,0,1.14861935834114,0,0.289562613335158,0.205476322550383,0.358121926479791,0.448340575974109,0.197030760201927,0.215627574859517,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0.36807447515742,0.500170521059677,0,0.415941723061614,0,0,0.585707074963566,0.300946099727719,0,0,0,0.184369168541703,0,0.391602314925481,0.343143423810856,0.206768026122887,0,0.106727557803444,0.909382714338778,0,0.30239029332968,0.248107807818777,0.153461973288062,0.280660094433074,0.128139149255701,0,0.321707842287215,0,0.308419387605311,0.532685175939381,0.0821271560138091,0.519254429183621,0.348631135379878,0.966875596732978,1.00253235151642,0,0.34444334449382,0.182091168006717,0.131124414959424,0,0.308061348417659,0,0,0,1.13733384070897,1.53084334748864,0,0,1.35473218771926,1.00337954770971,0.764628819135115,2.49322802678617,0,0,0.261435451024901,0.512900250232778,0,0,0.206082023295445,0.27470839445503,0.247528499761764,0.574265537996172,1.95018073810956,0,0.290012154876366,0.308097234229289,0,0.413509717453592,0.322260734604821,0.145016693914229,0.426133137080504,0.178064071293475,0.495854746082934,0.384380134730212,0.510450849978337,0.50578890427775,0,0.94443704049192,0.6970372701606,0.308033580176089,0.532306030317022,0,0.55597265731176,0.715624433709956,0.744316738719335,0,0,0.511795582622668,0,0,0.78494864019923,0,0,0.471249609382746,1.01091240786658,1.58510321173008,1.26377536871694,0,0.487426979262569,0,0,0.424216295861138,0,0,0,0,0.578775534266688,0.655894752046633,0.405820753925408,0.6196469961995,0,0,0.196498082026242,0.7133421029625,0,0,0,0.75894634753143,0,0.384888450902048,0.670302275535787,2.17781969722645,0.282431402330337,1.29151611801369,1.6847147566762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| ||
|short_description=p3@LETM1 | |short_description=p3@LETM1 | ||
}} | }} |
Latest revision as of 02:42, 17 September 2015
Short description: | p3@LETM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LETM1_5end |
Coexpression cluster: | NA |
Association with transcript: | -96bp_to_ENST00000512189_5end |
EntrezGene: | LETM1 |
HGNC: | 6556 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the coronary artery | 2.72e-12 | 3 |
plasmacytoid dendritic cell | 3.31e-12 | 3 |
glomerular cell | 4.88e-09 | 7 |
kidney corpuscule cell | 4.88e-09 | 7 |
mesangial cell | 1.42e-08 | 2 |
kidney interstitial cell | 1.42e-08 | 2 |
juxtaglomerular complex cell | 1.42e-08 | 2 |
renal interstitial pericyte | 1.42e-08 | 2 |
extraglomerular mesangial cell | 1.42e-08 | 2 |
kidney cortical cell | 4.60e-08 | 12 |
renal cortical epithelial cell | 4.60e-08 | 12 |